data_1RWM # _model_server_result.job_id ip0Kl4iMgCzxnA5_HiSM0Q _model_server_result.datetime_utc '2024-12-04 05:23:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1RWM # _exptl.entry_id 1RWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.583 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-OXO-3-[2-(5-{[4-(QUINOXALIN-2-YLAMINO)-BENZOYLAMINO]-METHYL}-THIOPHEN-2-YL)-ACETYLAMINO]-PENTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RWM _cell.length_a 63.221 _cell.length_b 63.221 _cell.length_c 161.164 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 166 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 285 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C18 _struct_conn.ptnr2_label_comp_id Q2Y _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id Q2Y _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.623 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H25 N5 O5 S' _chem_comp.formula_weight 531.583 _chem_comp.id Q2Y _chem_comp.mon_nstd_flag . _chem_comp.name '4-OXO-3-[2-(5-{[4-(QUINOXALIN-2-YLAMINO)-BENZOYLAMINO]-METHYL}-THIOPHEN-2-YL)-ACETYLAMINO]-PENTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O36 C6 Q2Y sing 277 n n O36 H36 Q2Y sing 278 n n C6 O35 Q2Y doub 279 n n C6 C7 Q2Y sing 280 n n C7 C27 Q2Y sing 281 n n C7 H71 Q2Y sing 282 n n C7 H72 Q2Y sing 283 n n C27 C18 Q2Y sing 284 n n C27 N5 Q2Y sing 285 n n C27 H27 Q2Y sing 286 n n C18 O32 Q2Y doub 287 n n C18 C1 Q2Y sing 288 n n N5 C10 Q2Y sing 289 n n N5 HN5 Q2Y sing 290 n n C10 O33 Q2Y doub 291 n n C10 C9 Q2Y sing 292 n n C9 C12 Q2Y sing 293 n n C9 H91 Q2Y sing 294 n n C9 H92 Q2Y sing 295 n n C12 C21 Q2Y doub 296 n y C12 S37 Q2Y sing 297 n y C21 C23 Q2Y sing 298 n y C21 H21 Q2Y sing 299 n n C23 C14 Q2Y doub 300 n y C23 H23 Q2Y sing 301 n n C14 S37 Q2Y sing 302 n y C14 C17 Q2Y sing 303 n n C17 N3 Q2Y sing 304 n n C17 H171 Q2Y sing 305 n n C17 H172 Q2Y sing 306 n n N3 C19 Q2Y sing 307 n n N3 HN3 Q2Y sing 308 n n C19 O34 Q2Y doub 309 n n C19 C20 Q2Y sing 310 n n C20 C22 Q2Y doub 311 n y C20 C26 Q2Y sing 312 n y C22 C11 Q2Y sing 313 n y C22 H22 Q2Y sing 314 n n C11 C24 Q2Y doub 315 n y C11 H11 Q2Y sing 316 n n C26 C25 Q2Y doub 317 n y C26 H26 Q2Y sing 318 n n C25 C24 Q2Y sing 319 n y C25 H25 Q2Y sing 320 n n C24 N2 Q2Y sing 321 n n N2 C13 Q2Y sing 322 n n N2 HN2 Q2Y sing 323 n n C13 C29 Q2Y doub 324 n y C13 N1 Q2Y sing 325 n y C29 N4 Q2Y sing 326 n y C29 H29 Q2Y sing 327 n n N4 C31 Q2Y doub 328 n y C31 C30 Q2Y sing 329 n y C31 C8 Q2Y sing 330 n y C30 C15 Q2Y doub 331 n y C30 H30 Q2Y sing 332 n n C8 N1 Q2Y doub 333 n y C8 C16 Q2Y sing 334 n y C16 C28 Q2Y doub 335 n y C16 H16 Q2Y sing 336 n n C28 C15 Q2Y sing 337 n y C28 H28 Q2Y sing 338 n n C15 H15 Q2Y sing 339 n n C1 H11A Q2Y sing 340 n n C1 H12 Q2Y sing 341 n n C1 H13 Q2Y sing 342 n n # _atom_sites.entry_id 1RWM _atom_sites.fract_transf_matrix[1][1] 0.015818 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015818 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006205 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 Q2Y A 1 501 1 Q2Y FRG . D 4 HOH A 1 3 3 HOH HOH . D 4 HOH A 2 6 6 HOH HOH . D 4 HOH A 3 8 8 HOH HOH . D 4 HOH A 4 9 9 HOH HOH . D 4 HOH A 5 11 11 HOH HOH . D 4 HOH A 6 12 12 HOH HOH . D 4 HOH A 7 15 15 HOH HOH . D 4 HOH A 8 17 17 HOH HOH . D 4 HOH A 9 21 21 HOH HOH . D 4 HOH A 10 22 22 HOH HOH . D 4 HOH A 11 23 23 HOH HOH . D 4 HOH A 12 24 24 HOH HOH . D 4 HOH A 13 26 26 HOH HOH . D 4 HOH A 14 28 28 HOH HOH . D 4 HOH A 15 29 29 HOH HOH . D 4 HOH A 16 31 31 HOH HOH . D 4 HOH A 17 32 32 HOH HOH . D 4 HOH A 18 35 35 HOH HOH . D 4 HOH A 19 36 36 HOH HOH . D 4 HOH A 20 38 38 HOH HOH . D 4 HOH A 21 39 39 HOH HOH . D 4 HOH A 22 40 40 HOH HOH . D 4 HOH A 23 41 41 HOH HOH . D 4 HOH A 24 44 44 HOH HOH . D 4 HOH A 25 45 45 HOH HOH . D 4 HOH A 26 46 46 HOH HOH . D 4 HOH A 27 47 47 HOH HOH . D 4 HOH A 28 48 48 HOH HOH . D 4 HOH A 29 49 49 HOH HOH . D 4 HOH A 30 50 50 HOH HOH . D 4 HOH A 31 51 51 HOH HOH . D 4 HOH A 32 52 52 HOH HOH . D 4 HOH A 33 56 56 HOH HOH . D 4 HOH A 34 57 57 HOH HOH . D 4 HOH A 35 58 58 HOH HOH . D 4 HOH A 36 59 59 HOH HOH . D 4 HOH A 37 60 60 HOH HOH . D 4 HOH A 38 61 61 HOH HOH . D 4 HOH A 39 62 62 HOH HOH . D 4 HOH A 40 64 64 HOH HOH . D 4 HOH A 41 65 65 HOH HOH . D 4 HOH A 42 66 66 HOH HOH . D 4 HOH A 43 67 67 HOH HOH . D 4 HOH A 44 68 68 HOH HOH . E 4 HOH B 1 1 1 HOH HOH . E 4 HOH B 2 2 2 HOH HOH . E 4 HOH B 3 4 4 HOH HOH . E 4 HOH B 4 5 5 HOH HOH . E 4 HOH B 5 7 7 HOH HOH . E 4 HOH B 6 10 10 HOH HOH . E 4 HOH B 7 13 13 HOH HOH . E 4 HOH B 8 14 14 HOH HOH . E 4 HOH B 9 16 16 HOH HOH . E 4 HOH B 10 18 18 HOH HOH . E 4 HOH B 11 19 19 HOH HOH . E 4 HOH B 12 20 20 HOH HOH . E 4 HOH B 13 25 25 HOH HOH . E 4 HOH B 14 27 27 HOH HOH . E 4 HOH B 15 30 30 HOH HOH . E 4 HOH B 16 33 33 HOH HOH . E 4 HOH B 17 34 34 HOH HOH . E 4 HOH B 18 37 37 HOH HOH . E 4 HOH B 19 42 42 HOH HOH . E 4 HOH B 20 43 43 HOH HOH . E 4 HOH B 21 53 53 HOH HOH . E 4 HOH B 22 54 54 HOH HOH . E 4 HOH B 23 55 55 HOH HOH . E 4 HOH B 24 63 63 HOH HOH . E 4 HOH B 25 69 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O36 Q2Y . . . C 3 33.03 61.855 2.217 1 37.16 ? O36 Q2Y 501 A 1 HETATM 2 C C6 Q2Y . . . C 3 34.24 61.655 2.466 1 37.15 ? C6 Q2Y 501 A 1 HETATM 3 O O35 Q2Y . . . C 3 35.142 62.391 2.004 1 36.78 ? O35 Q2Y 501 A 1 HETATM 4 C C7 Q2Y . . . C 3 34.647 60.489 3.348 1 35.74 ? C7 Q2Y 501 A 1 HETATM 5 C C27 Q2Y . . . C 3 33.492 59.927 4.179 1 34.5 ? C27 Q2Y 501 A 1 HETATM 6 C C18 Q2Y . . . C 3 33.711 58.449 4.398 1 32.14 ? C18 Q2Y 501 A 1 HETATM 7 O O32 Q2Y . . . C 3 33.398 57.682 3.499 1 31.19 ? O32 Q2Y 501 A 1 HETATM 8 N N5 Q2Y . . . C 3 33.361 60.646 5.438 1 37.41 ? N5 Q2Y 501 A 1 HETATM 9 C C10 Q2Y . . . C 3 32.22 60.736 6.127 1 39.39 ? C10 Q2Y 501 A 1 HETATM 10 O O33 Q2Y . . . C 3 31.11 60.662 5.623 1 40.55 ? O33 Q2Y 501 A 1 HETATM 11 C C9 Q2Y . . . C 3 32.346 60.95 7.615 1 40.71 ? C9 Q2Y 501 A 1 HETATM 12 C C12 Q2Y . . . C 3 31.576 62.187 8.022 1 43.53 ? C12 Q2Y 501 A 1 HETATM 13 C C21 Q2Y . . . C 3 30.451 62.182 8.597 1 44.39 ? C21 Q2Y 501 A 1 HETATM 14 C C23 Q2Y . . . C 3 30.029 63.458 9.004 1 44.93 ? C23 Q2Y 501 A 1 HETATM 15 C C14 Q2Y . . . C 3 30.812 64.394 8.671 1 44.1 ? C14 Q2Y 501 A 1 HETATM 16 S S37 Q2Y . . . C 3 32.073 63.753 7.821 1 43.74 ? S37 Q2Y 501 A 1 HETATM 17 C C17 Q2Y . . . C 3 30.618 65.854 9.009 1 43.27 ? C17 Q2Y 501 A 1 HETATM 18 N N3 Q2Y . . . C 3 31.858 66.518 9.381 1 45.25 ? N3 Q2Y 501 A 1 HETATM 19 C C19 Q2Y . . . C 3 31.888 67.45 10.334 1 47.44 ? C19 Q2Y 501 A 1 HETATM 20 O O34 Q2Y . . . C 3 30.905 67.675 11.018 1 48.39 ? O34 Q2Y 501 A 1 HETATM 21 C C20 Q2Y . . . C 3 33.134 68.243 10.619 1 49.73 ? C20 Q2Y 501 A 1 HETATM 22 C C22 Q2Y . . . C 3 33.03 69.547 11.104 1 51.75 ? C22 Q2Y 501 A 1 HETATM 23 C C11 Q2Y . . . C 3 34.175 70.292 11.388 1 55.06 ? C11 Q2Y 501 A 1 HETATM 24 C C26 Q2Y . . . C 3 34.397 67.682 10.442 1 52.98 ? C26 Q2Y 501 A 1 HETATM 25 C C25 Q2Y . . . C 3 35.543 68.428 10.734 1 55.97 ? C25 Q2Y 501 A 1 HETATM 26 C C24 Q2Y . . . C 3 35.444 69.74 11.209 1 58.2 ? C24 Q2Y 501 A 1 HETATM 27 N N2 Q2Y . . . C 3 36.533 70.509 11.513 1 62.87 ? N2 Q2Y 501 A 1 HETATM 28 C C13 Q2Y . . . C 3 37.85 70.147 11.429 1 67.83 ? C13 Q2Y 501 A 1 HETATM 29 C C29 Q2Y . . . C 3 38.834 71.139 11.491 1 69.57 ? C29 Q2Y 501 A 1 HETATM 30 N N4 Q2Y . . . C 3 40.136 70.805 11.43 1 70.67 ? N4 Q2Y 501 A 1 HETATM 31 C C31 Q2Y . . . C 3 40.507 69.516 11.322 1 71.28 ? C31 Q2Y 501 A 1 HETATM 32 C C30 Q2Y . . . C 3 41.86 69.169 11.262 1 72.06 ? C30 Q2Y 501 A 1 HETATM 33 C C8 Q2Y . . . C 3 39.532 68.518 11.265 1 70.71 ? C8 Q2Y 501 A 1 HETATM 34 N N1 Q2Y . . . C 3 38.232 68.857 11.327 1 69.69 ? N1 Q2Y 501 A 1 HETATM 35 C C16 Q2Y . . . C 3 39.909 67.176 11.147 1 70.72 ? C16 Q2Y 501 A 1 HETATM 36 C C28 Q2Y . . . C 3 41.261 66.832 11.086 1 71.01 ? C28 Q2Y 501 A 1 HETATM 37 C C15 Q2Y . . . C 3 42.238 67.828 11.146 1 71.48 ? C15 Q2Y 501 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #