data_1RX1 # _model_server_result.job_id 3sUzSvHc2kKt_qxL9AO7jQ _model_server_result.datetime_utc '2024-11-23 11:05:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rx1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":164}' # _entry.id 1RX1 # _exptl.entry_id 1RX1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RX1 _cell.length_a 34.455 _cell.length_b 45.37 _cell.length_c 98.701 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RX1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 116 A ASP 116 1_455 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc2 A ND1 HIS 149 A HIS 149 1_455 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc3 A OXT ARG 159 A ARG 159 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc4 B CA CA . A CA 300 1_555 D O HOH . A HOH 310 3_645 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc5 B CA CA . A CA 300 1_555 D O HOH . A HOH 370 1_455 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc6 B CA CA . A CA 300 1_555 D O HOH . A HOH 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc7 B CA CA . A CA 300 1_555 D O HOH . A HOH 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1RX1 _atom_sites.fract_transf_matrix[1][1] 0.029023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010132 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 300 300 CA CA . C 3 NAP A 1 164 164 NAP NAP . D 4 HOH A 1 301 301 HOH HOH . D 4 HOH A 2 302 302 HOH HOH . D 4 HOH A 3 303 303 HOH HOH . D 4 HOH A 4 305 305 HOH HOH . D 4 HOH A 5 307 307 HOH HOH . D 4 HOH A 6 309 309 HOH HOH . D 4 HOH A 7 310 310 HOH HOH . D 4 HOH A 8 314 314 HOH HOH . D 4 HOH A 9 316 316 HOH HOH . D 4 HOH A 10 317 317 HOH HOH . D 4 HOH A 11 319 319 HOH HOH . D 4 HOH A 12 320 320 HOH HOH . D 4 HOH A 13 321 321 HOH HOH . D 4 HOH A 14 322 322 HOH HOH . D 4 HOH A 15 323 323 HOH HOH . D 4 HOH A 16 324 324 HOH HOH . D 4 HOH A 17 325 325 HOH HOH . D 4 HOH A 18 326 326 HOH HOH . D 4 HOH A 19 327 327 HOH HOH . D 4 HOH A 20 328 328 HOH HOH . D 4 HOH A 21 329 329 HOH HOH . D 4 HOH A 22 332 332 HOH HOH . D 4 HOH A 23 334 334 HOH HOH . D 4 HOH A 24 335 335 HOH HOH . D 4 HOH A 25 336 336 HOH HOH . D 4 HOH A 26 340 340 HOH HOH . D 4 HOH A 27 341 341 HOH HOH . D 4 HOH A 28 343 343 HOH HOH . D 4 HOH A 29 344 344 HOH HOH . D 4 HOH A 30 346 346 HOH HOH . D 4 HOH A 31 347 347 HOH HOH . D 4 HOH A 32 348 348 HOH HOH . D 4 HOH A 33 349 349 HOH HOH . D 4 HOH A 34 350 350 HOH HOH . D 4 HOH A 35 354 354 HOH HOH . D 4 HOH A 36 356 356 HOH HOH . D 4 HOH A 37 357 357 HOH HOH . D 4 HOH A 38 358 358 HOH HOH . D 4 HOH A 39 361 361 HOH HOH . D 4 HOH A 40 362 362 HOH HOH . D 4 HOH A 41 363 363 HOH HOH . D 4 HOH A 42 364 364 HOH HOH . D 4 HOH A 43 365 365 HOH HOH . D 4 HOH A 44 368 368 HOH HOH . D 4 HOH A 45 370 370 HOH HOH . D 4 HOH A 46 371 371 HOH HOH . D 4 HOH A 47 372 372 HOH HOH . D 4 HOH A 48 373 373 HOH HOH . D 4 HOH A 49 374 374 HOH HOH . D 4 HOH A 50 375 375 HOH HOH . D 4 HOH A 51 377 377 HOH HOH . D 4 HOH A 52 378 378 HOH HOH . D 4 HOH A 53 379 379 HOH HOH . D 4 HOH A 54 380 380 HOH HOH . D 4 HOH A 55 381 381 HOH HOH . D 4 HOH A 56 382 382 HOH HOH . D 4 HOH A 57 383 383 HOH HOH . D 4 HOH A 58 384 384 HOH HOH . D 4 HOH A 59 385 385 HOH HOH . D 4 HOH A 60 386 386 HOH HOH . D 4 HOH A 61 387 387 HOH HOH . D 4 HOH A 62 388 388 HOH HOH . D 4 HOH A 63 389 389 HOH HOH . D 4 HOH A 64 390 390 HOH HOH . D 4 HOH A 65 391 391 HOH HOH . D 4 HOH A 66 392 392 HOH HOH . D 4 HOH A 67 393 393 HOH HOH . D 4 HOH A 68 395 395 HOH HOH . D 4 HOH A 69 396 396 HOH HOH . D 4 HOH A 70 397 397 HOH HOH . D 4 HOH A 71 398 398 HOH HOH . D 4 HOH A 72 399 399 HOH HOH . D 4 HOH A 73 400 400 HOH HOH . D 4 HOH A 74 401 401 HOH HOH . D 4 HOH A 75 402 402 HOH HOH . D 4 HOH A 76 403 403 HOH HOH . D 4 HOH A 77 404 404 HOH HOH . D 4 HOH A 78 405 405 HOH HOH . D 4 HOH A 79 406 406 HOH HOH . D 4 HOH A 80 407 407 HOH HOH . D 4 HOH A 81 408 408 HOH HOH . D 4 HOH A 82 409 409 HOH HOH . D 4 HOH A 83 410 410 HOH HOH . D 4 HOH A 84 411 411 HOH HOH . D 4 HOH A 85 412 412 HOH HOH . D 4 HOH A 86 413 413 HOH HOH . D 4 HOH A 87 415 415 HOH HOH . D 4 HOH A 88 416 416 HOH HOH . D 4 HOH A 89 417 417 HOH HOH . D 4 HOH A 90 418 418 HOH HOH . D 4 HOH A 91 419 419 HOH HOH . D 4 HOH A 92 420 420 HOH HOH . D 4 HOH A 93 421 421 HOH HOH . D 4 HOH A 94 422 422 HOH HOH . D 4 HOH A 95 423 423 HOH HOH . D 4 HOH A 96 424 424 HOH HOH . D 4 HOH A 97 425 425 HOH HOH . D 4 HOH A 98 426 426 HOH HOH . D 4 HOH A 99 427 427 HOH HOH . D 4 HOH A 100 428 428 HOH HOH . D 4 HOH A 101 429 429 HOH HOH . D 4 HOH A 102 430 430 HOH HOH . D 4 HOH A 103 431 431 HOH HOH . D 4 HOH A 104 432 432 HOH HOH . D 4 HOH A 105 433 433 HOH HOH . D 4 HOH A 106 434 434 HOH HOH . D 4 HOH A 107 435 435 HOH HOH . D 4 HOH A 108 436 436 HOH HOH . D 4 HOH A 109 437 437 HOH HOH . D 4 HOH A 110 438 438 HOH HOH . D 4 HOH A 111 439 439 HOH HOH . D 4 HOH A 112 440 440 HOH HOH . D 4 HOH A 113 441 441 HOH HOH . D 4 HOH A 114 442 442 HOH HOH . D 4 HOH A 115 443 443 HOH HOH . D 4 HOH A 116 444 444 HOH HOH . D 4 HOH A 117 445 445 HOH HOH . D 4 HOH A 118 446 446 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 3 29.75 53.799 15.038 1 15.09 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . C 3 28.649 53.272 15.873 1 10.21 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . C 3 30.269 53.213 13.782 1 11.32 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . C 3 29.416 55.302 14.632 1 23.21 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . C 3 28.634 56.198 15.464 1 20.11 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . C 3 28.348 57.492 14.729 1 21.18 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . C 3 27.204 57.249 13.886 1 13.27 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . C 3 27.877 58.682 15.553 1 23.7 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . C 3 28.98 59.52 15.788 1 30.36 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . C 3 26.96 59.497 14.647 1 23.08 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . C 3 27.754 60.179 13.697 1 27.55 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . C 3 26.362 58.377 13.803 1 14.57 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . C 3 25.151 58.07 14.545 1 16.35 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . C 3 25.019 57.128 15.497 1 11.53 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . C 3 23.774 57.117 15.965 1 15.67 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . C 3 23.096 58.122 15.275 1 19.16 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . C 3 21.749 58.61 15.294 1 20.79 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . C 3 20.758 58.167 16.113 1 22.12 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . C 3 21.455 59.611 14.449 1 14.6 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . C 3 22.395 60.078 13.665 1 17.51 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . C 3 23.664 59.706 13.559 1 19.47 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . C 3 23.952 58.732 14.403 1 15.79 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . C 3 31 54.149 15.997 1 16.41 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . C 3 31.67 53.552 17.361 1 19.74 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . C 3 30.535 53.374 18.312 1 11.32 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . C 3 32.913 54.287 17.733 1 27.3 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . C 3 32.162 52.116 16.883 1 25.33 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . C 3 33.44 52.105 16.087 1 33.02 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . C 3 34.257 50.774 16.339 1 37.39 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . C 3 33.356 49.639 16.094 1 35.87 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . C 3 35.564 50.389 15.552 1 38.16 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . C 3 36.72 50.135 16.254 1 34.87 ? O3D NAP 164 A 1 HETATM 33 C C2D NAP . . . C 3 35.261 49.085 14.737 1 37.5 ? C2D NAP 164 A 1 HETATM 34 O O2D NAP . . . C 3 36.458 48.425 14.531 1 28.18 ? O2D NAP 164 A 1 HETATM 35 C C1D NAP . . . C 3 34.094 48.557 15.421 1 38.77 ? C1D NAP 164 A 1 HETATM 36 N N1N NAP . . . C 3 33.066 47.586 14.805 1 37.76 ? N1N NAP 164 A 1 HETATM 37 C C2N NAP . . . C 3 33.149 46.219 15.096 1 40.91 ? C2N NAP 164 A 1 HETATM 38 C C3N NAP . . . C 3 32.329 45.301 14.614 1 38.15 ? C3N NAP 164 A 1 HETATM 39 C C7N NAP . . . C 3 32.604 43.928 15.04 1 36.47 ? C7N NAP 164 A 1 HETATM 40 O O7N NAP . . . C 3 31.934 42.976 14.556 1 31.87 ? O7N NAP 164 A 1 HETATM 41 N N7N NAP . . . C 3 33.575 43.634 15.912 1 34.84 ? N7N NAP 164 A 1 HETATM 42 C C4N NAP . . . C 3 31.155 45.702 13.666 1 34.57 ? C4N NAP 164 A 1 HETATM 43 C C5N NAP . . . C 3 31.202 47.218 13.454 1 32.65 ? C5N NAP 164 A 1 HETATM 44 C C6N NAP . . . C 3 32.06 48.013 13.974 1 29.38 ? C6N NAP 164 A 1 HETATM 45 P P2B NAP . . . C 3 27.9 61.768 13.749 1 22.6 ? P2B NAP 164 A 1 HETATM 46 O O1X NAP . . . C 3 28.315 61.969 12.25 1 31.54 ? O1X NAP 164 A 1 HETATM 47 O O2X NAP . . . C 3 26.554 62.174 14.275 1 21.05 ? O2X NAP 164 A 1 HETATM 48 O O3X NAP . . . C 3 29.135 61.978 14.594 1 20.88 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #