data_1RX4 # _model_server_result.job_id 36VGyVyGIrK3eFSd5AuHxA _model_server_result.datetime_utc '2024-11-23 10:33:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":164}' # _entry.id 1RX4 # _exptl.entry_id 1RX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RX4 _cell.length_a 34.923 _cell.length_b 45.075 _cell.length_c 100.879 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 152 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 152 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 162 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.013 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 305 n n PA O2A NAP sing 306 n n PA O5B NAP sing 307 n n PA O3 NAP sing 308 n n O2A HOA2 NAP sing 309 n n O5B C5B NAP sing 310 n n C5B C4B NAP sing 311 n n C5B H51A NAP sing 312 n n C5B H52A NAP sing 313 n n C4B O4B NAP sing 314 n n C4B C3B NAP sing 315 n n C4B H4B NAP sing 316 n n O4B C1B NAP sing 317 n n C3B O3B NAP sing 318 n n C3B C2B NAP sing 319 n n C3B H3B NAP sing 320 n n O3B HO3A NAP sing 321 n n C2B O2B NAP sing 322 n n C2B C1B NAP sing 323 n n C2B H2B NAP sing 324 n n O2B P2B NAP sing 325 n n C1B N9A NAP sing 326 n n C1B H1B NAP sing 327 n n N9A C8A NAP sing 328 n y N9A C4A NAP sing 329 n y C8A N7A NAP doub 330 n y C8A H8A NAP sing 331 n n N7A C5A NAP sing 332 n y C5A C6A NAP sing 333 n y C5A C4A NAP doub 334 n y C6A N6A NAP sing 335 n n C6A N1A NAP doub 336 n y N6A H61A NAP sing 337 n n N6A H62A NAP sing 338 n n N1A C2A NAP sing 339 n y C2A N3A NAP doub 340 n y C2A H2A NAP sing 341 n n N3A C4A NAP sing 342 n y O3 PN NAP sing 343 n n PN O1N NAP doub 344 n n PN O2N NAP sing 345 n n PN O5D NAP sing 346 n n O5D C5D NAP sing 347 n n C5D C4D NAP sing 348 n n C5D H51N NAP sing 349 n n C5D H52N NAP sing 350 n n C4D O4D NAP sing 351 n n C4D C3D NAP sing 352 n n C4D H4D NAP sing 353 n n O4D C1D NAP sing 354 n n C3D O3D NAP sing 355 n n C3D C2D NAP sing 356 n n C3D H3D NAP sing 357 n n O3D HO3N NAP sing 358 n n C2D O2D NAP sing 359 n n C2D C1D NAP sing 360 n n C2D H2D NAP sing 361 n n O2D HO2N NAP sing 362 n n C1D N1N NAP sing 363 n n C1D H1D NAP sing 364 n n N1N C2N NAP sing 365 n y N1N C6N NAP doub 366 n y C2N C3N NAP doub 367 n y C2N H2N NAP sing 368 n n C3N C7N NAP sing 369 n n C3N C4N NAP sing 370 n y C7N O7N NAP doub 371 n n C7N N7N NAP sing 372 n n N7N H71N NAP sing 373 n n N7N H72N NAP sing 374 n n C4N C5N NAP doub 375 n y C4N H4N NAP sing 376 n n C5N C6N NAP sing 377 n y C5N H5N NAP sing 378 n n C6N H6N NAP sing 379 n n P2B O1X NAP doub 380 n n P2B O2X NAP sing 381 n n P2B O3X NAP sing 382 n n O2X HOP2 NAP sing 383 n n O3X HOP3 NAP sing 384 n n # _atom_sites.entry_id 1RX4 _atom_sites.fract_transf_matrix[1][1] 0.028634 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022185 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009913 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DDF A 1 161 161 DDF DDF . C 3 BME A 1 162 162 BME BME . D 4 NAP A 1 164 164 NAP NAP . E 5 HOH A 1 301 301 HOH HOH . E 5 HOH A 2 302 302 HOH HOH . E 5 HOH A 3 303 303 HOH HOH . E 5 HOH A 4 304 304 HOH HOH . E 5 HOH A 5 305 305 HOH HOH . E 5 HOH A 6 306 306 HOH HOH . E 5 HOH A 7 307 307 HOH HOH . E 5 HOH A 8 308 308 HOH HOH . E 5 HOH A 9 309 309 HOH HOH . E 5 HOH A 10 310 310 HOH HOH . E 5 HOH A 11 311 311 HOH HOH . E 5 HOH A 12 312 312 HOH HOH . E 5 HOH A 13 313 313 HOH HOH . E 5 HOH A 14 314 314 HOH HOH . E 5 HOH A 15 315 315 HOH HOH . E 5 HOH A 16 316 316 HOH HOH . E 5 HOH A 17 317 317 HOH HOH . E 5 HOH A 18 318 318 HOH HOH . E 5 HOH A 19 319 319 HOH HOH . E 5 HOH A 20 320 320 HOH HOH . E 5 HOH A 21 321 321 HOH HOH . E 5 HOH A 22 322 322 HOH HOH . E 5 HOH A 23 323 323 HOH HOH . E 5 HOH A 24 324 324 HOH HOH . E 5 HOH A 25 325 325 HOH HOH . E 5 HOH A 26 326 326 HOH HOH . E 5 HOH A 27 327 327 HOH HOH . E 5 HOH A 28 328 328 HOH HOH . E 5 HOH A 29 329 329 HOH HOH . E 5 HOH A 30 330 330 HOH HOH . E 5 HOH A 31 331 331 HOH HOH . E 5 HOH A 32 332 332 HOH HOH . E 5 HOH A 33 333 333 HOH HOH . E 5 HOH A 34 334 334 HOH HOH . E 5 HOH A 35 335 335 HOH HOH . E 5 HOH A 36 336 336 HOH HOH . E 5 HOH A 37 337 337 HOH HOH . E 5 HOH A 38 338 338 HOH HOH . E 5 HOH A 39 339 339 HOH HOH . E 5 HOH A 40 340 340 HOH HOH . E 5 HOH A 41 341 341 HOH HOH . E 5 HOH A 42 342 342 HOH HOH . E 5 HOH A 43 343 343 HOH HOH . E 5 HOH A 44 344 344 HOH HOH . E 5 HOH A 45 345 345 HOH HOH . E 5 HOH A 46 346 346 HOH HOH . E 5 HOH A 47 347 347 HOH HOH . E 5 HOH A 48 348 348 HOH HOH . E 5 HOH A 49 349 349 HOH HOH . E 5 HOH A 50 350 350 HOH HOH . E 5 HOH A 51 353 353 HOH HOH . E 5 HOH A 52 354 354 HOH HOH . E 5 HOH A 53 355 355 HOH HOH . E 5 HOH A 54 356 356 HOH HOH . E 5 HOH A 55 357 357 HOH HOH . E 5 HOH A 56 358 358 HOH HOH . E 5 HOH A 57 359 359 HOH HOH . E 5 HOH A 58 360 360 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 4 29.492 54.422 14.704 1 20.74 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . D 4 28.516 53.828 15.665 1 16.42 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . D 4 30.025 53.64 13.564 1 19.06 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . D 4 28.99 55.842 14.203 1 24.62 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . D 4 28.329 56.743 15.126 1 20.95 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . D 4 27.9 57.949 14.327 1 24.27 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . D 4 26.852 57.607 13.386 1 30.42 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . D 4 27.411 59.172 15.076 1 22.55 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . D 4 28.509 59.983 15.427 1 22.43 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . D 4 26.527 59.868 14.04 1 23.6 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . D 4 27.396 60.463 13.094 1 33.09 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . D 4 25.894 58.646 13.376 1 25.72 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . D 4 24.739 58.293 14.187 1 25.23 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . D 4 24.593 57.397 15.216 1 17.15 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . D 4 23.36 57.369 15.698 1 19.08 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . D 4 22.684 58.33 14.941 1 26.54 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . D 4 21.346 58.817 14.98 1 33.95 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . D 4 20.43 58.333 15.837 1 35.35 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . D 4 20.984 59.803 14.094 1 30.45 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . D 4 21.936 60.265 13.234 1 32.66 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . D 4 23.239 59.887 13.115 1 26.54 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . D 4 23.532 58.914 14.011 1 26.16 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . D 4 30.758 54.888 15.561 1 34.67 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . D 4 31.263 54.478 17.057 1 37.82 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . D 4 31.43 53.005 17.059 1 38.65 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . D 4 30.356 55.1 18.06 1 36.75 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . D 4 32.724 55.131 17.177 1 37.04 ? O5D NAP 164 A 1 HETATM 28 C C5D NAP . . . D 4 32.941 56.563 17.568 1 35.88 ? C5D NAP 164 A 1 HETATM 29 C C4D NAP . . . D 4 34.51 56.792 17.605 1 45.58 ? C4D NAP 164 A 1 HETATM 30 O O4D NAP . . . D 4 34.897 57.771 18.631 1 51.49 ? O4D NAP 164 A 1 HETATM 31 C C3D NAP . . . D 4 35.264 55.532 18.156 1 55.68 ? C3D NAP 164 A 1 HETATM 32 O O3D NAP . . . D 4 36.446 55.242 17.526 1 61.06 ? O3D NAP 164 A 1 HETATM 33 C C2D NAP . . . D 4 35.462 55.764 19.696 1 55.13 ? C2D NAP 164 A 1 HETATM 34 O O2D NAP . . . D 4 36.73 55.464 20.139 1 54.14 ? O2D NAP 164 A 1 HETATM 35 C C1D NAP . . . D 4 34.922 57.082 19.931 1 53.17 ? C1D NAP 164 A 1 HETATM 36 P P2B NAP . . . D 4 27.356 62.033 12.786 1 35.56 ? P2B NAP 164 A 1 HETATM 37 O O1X NAP . . . D 4 27.601 62.058 11.249 1 38.68 ? O1X NAP 164 A 1 HETATM 38 O O2X NAP . . . D 4 26.013 62.6 13.191 1 40.33 ? O2X NAP 164 A 1 HETATM 39 O O3X NAP . . . D 4 28.502 62.618 13.592 1 42.36 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 39 #