data_1RX5 # _model_server_result.job_id UKZsMAEJd6EiLlK9WrnCYQ _model_server_result.datetime_utc '2024-11-05 06:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rx5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":161}' # _entry.id 1RX5 # _exptl.entry_id 1RX5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,10-DIDEAZATETRAHYDROFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RX5 _cell.length_a 34.808 _cell.length_b 44.761 _cell.length_c 100.826 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RX5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H25 N5 O6' _chem_comp.formula_weight 443.453 _chem_comp.id DDF _chem_comp.mon_nstd_flag . _chem_comp.name '5,10-DIDEAZATETRAHYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DDF sing 83 n y N1 C8A DDF sing 84 n y N1 HN1 DDF sing 85 n n C2 NA2 DDF sing 86 n n C2 N3 DDF doub 87 n y NA2 HN21 DDF sing 88 n n NA2 HN22 DDF sing 89 n n N3 C4 DDF sing 90 n y C4 O4 DDF doub 91 n n C4 C4A DDF sing 92 n y C4A C5 DDF sing 93 n n C4A C8A DDF doub 94 n y C5 C6 DDF sing 95 n n C5 H51 DDF sing 96 n n C5 H52 DDF sing 97 n n C6 C7 DDF sing 98 n n C6 C9 DDF sing 99 n n C6 H6 DDF sing 100 n n C7 N8 DDF sing 101 n n C7 H71 DDF sing 102 n n C7 H72 DDF sing 103 n n N8 C8A DDF sing 104 n n N8 HN8 DDF sing 105 n n C9 C10 DDF sing 106 n n C9 H91 DDF sing 107 n n C9 H92 DDF sing 108 n n C10 C14 DDF sing 109 n n C10 H101 DDF sing 110 n n C10 H102 DDF sing 111 n n C11 C12 DDF doub 112 n y C11 C16 DDF sing 113 n y C11 C DDF sing 114 n n C12 C13 DDF sing 115 n y C12 H12 DDF sing 116 n n C13 C14 DDF doub 117 n y C13 H13 DDF sing 118 n n C14 C15 DDF sing 119 n y C15 C16 DDF doub 120 n y C15 H15 DDF sing 121 n n C16 H16 DDF sing 122 n n C O DDF doub 123 n n C N DDF sing 124 n n N CA DDF sing 125 n n N HN DDF sing 126 n n CA CB DDF sing 127 n n CA CT DDF sing 128 n n CA HA DDF sing 129 n n CB CG DDF sing 130 n n CB HB1 DDF sing 131 n n CB HB2 DDF sing 132 n n CG CD DDF sing 133 n n CG HG1 DDF sing 134 n n CG HG2 DDF sing 135 n n CD OE1 DDF doub 136 n n CD OE2 DDF sing 137 n n OE2 HOE2 DDF sing 138 n n CT O1 DDF doub 139 n n CT O2 DDF sing 140 n n O2 HO2 DDF sing 141 n n # _atom_sites.entry_id 1RX5 _atom_sites.fract_transf_matrix[1][1] 0.028729 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022341 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DDF A 1 161 161 DDF DDF . C 3 HOH A 1 299 299 HOH HOH . C 3 HOH A 2 300 300 HOH HOH . C 3 HOH A 3 301 301 HOH HOH . C 3 HOH A 4 302 302 HOH HOH . C 3 HOH A 5 303 303 HOH HOH . C 3 HOH A 6 304 304 HOH HOH . C 3 HOH A 7 305 305 HOH HOH . C 3 HOH A 8 306 306 HOH HOH . C 3 HOH A 9 307 307 HOH HOH . C 3 HOH A 10 308 308 HOH HOH . C 3 HOH A 11 309 309 HOH HOH . C 3 HOH A 12 310 310 HOH HOH . C 3 HOH A 13 311 311 HOH HOH . C 3 HOH A 14 313 313 HOH HOH . C 3 HOH A 15 314 314 HOH HOH . C 3 HOH A 16 315 315 HOH HOH . C 3 HOH A 17 316 316 HOH HOH . C 3 HOH A 18 317 317 HOH HOH . C 3 HOH A 19 318 318 HOH HOH . C 3 HOH A 20 319 319 HOH HOH . C 3 HOH A 21 320 320 HOH HOH . C 3 HOH A 22 321 321 HOH HOH . C 3 HOH A 23 322 322 HOH HOH . C 3 HOH A 24 323 323 HOH HOH . C 3 HOH A 25 324 324 HOH HOH . C 3 HOH A 26 325 325 HOH HOH . C 3 HOH A 27 326 326 HOH HOH . C 3 HOH A 28 327 327 HOH HOH . C 3 HOH A 29 328 328 HOH HOH . C 3 HOH A 30 329 329 HOH HOH . C 3 HOH A 31 330 330 HOH HOH . C 3 HOH A 32 331 331 HOH HOH . C 3 HOH A 33 332 332 HOH HOH . C 3 HOH A 34 333 333 HOH HOH . C 3 HOH A 35 334 334 HOH HOH . C 3 HOH A 36 335 335 HOH HOH . C 3 HOH A 37 336 336 HOH HOH . C 3 HOH A 38 337 337 HOH HOH . C 3 HOH A 39 338 338 HOH HOH . C 3 HOH A 40 339 339 HOH HOH . C 3 HOH A 41 340 340 HOH HOH . C 3 HOH A 42 341 341 HOH HOH . C 3 HOH A 43 342 342 HOH HOH . C 3 HOH A 44 343 343 HOH HOH . C 3 HOH A 45 344 344 HOH HOH . C 3 HOH A 46 345 345 HOH HOH . C 3 HOH A 47 346 346 HOH HOH . C 3 HOH A 48 347 347 HOH HOH . C 3 HOH A 49 348 348 HOH HOH . C 3 HOH A 50 349 349 HOH HOH . C 3 HOH A 51 350 350 HOH HOH . C 3 HOH A 52 351 351 HOH HOH . C 3 HOH A 53 353 353 HOH HOH . C 3 HOH A 54 354 354 HOH HOH . C 3 HOH A 55 355 355 HOH HOH . C 3 HOH A 56 356 356 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDF . . . B 2 29.988 40.913 12.429 1 3.8 ? N1 DDF 161 A 1 HETATM 2 C C2 DDF . . . B 2 30.796 39.842 12.412 1 10.23 ? C2 DDF 161 A 1 HETATM 3 N NA2 DDF . . . B 2 30.384 38.664 12.581 1 6.26 ? NA2 DDF 161 A 1 HETATM 4 N N3 DDF . . . B 2 32.195 39.968 12.182 1 19.32 ? N3 DDF 161 A 1 HETATM 5 C C4 DDF . . . B 2 32.794 41.154 11.967 1 18.6 ? C4 DDF 161 A 1 HETATM 6 O O4 DDF . . . B 2 34.005 41.218 11.783 1 26.25 ? O4 DDF 161 A 1 HETATM 7 C C4A DDF . . . B 2 31.875 42.321 11.983 1 14.33 ? C4A DDF 161 A 1 HETATM 8 C C5 DDF . . . B 2 32.42 43.61 11.626 1 11.05 ? C5 DDF 161 A 1 HETATM 9 C C6 DDF . . . B 2 31.359 44.582 11.506 1 17.07 ? C6 DDF 161 A 1 HETATM 10 C C7 DDF . . . B 2 30.101 44.371 12.183 1 17.34 ? C7 DDF 161 A 1 HETATM 11 N N8 DDF . . . B 2 29.621 43.113 12.224 1 15.79 ? N8 DDF 161 A 1 HETATM 12 C C8A DDF . . . B 2 30.538 42.134 12.203 1 8.12 ? C8A DDF 161 A 1 HETATM 13 C C9 DDF . . . B 2 31.43 45.481 10.295 1 25.82 ? C9 DDF 161 A 1 HETATM 14 C C10 DDF . . . B 2 32.862 45.483 9.644 1 31.42 ? C10 DDF 161 A 1 HETATM 15 C C11 DDF . . . B 2 33.553 43.776 5.569 1 31.95 ? C11 DDF 161 A 1 HETATM 16 C C12 DDF . . . B 2 34.521 44.575 6.234 1 37.51 ? C12 DDF 161 A 1 HETATM 17 C C13 DDF . . . B 2 34.288 45.096 7.516 1 38.35 ? C13 DDF 161 A 1 HETATM 18 C C14 DDF . . . B 2 33.039 44.85 8.222 1 34.11 ? C14 DDF 161 A 1 HETATM 19 C C15 DDF . . . B 2 32.111 44.098 7.603 1 30.2 ? C15 DDF 161 A 1 HETATM 20 C C16 DDF . . . B 2 32.386 43.581 6.307 1 27.16 ? C16 DDF 161 A 1 HETATM 21 C C DDF . . . B 2 33.641 43.124 4.216 1 29.39 ? C DDF 161 A 1 HETATM 22 O O DDF . . . B 2 34.515 43.262 3.36 1 35.05 ? O DDF 161 A 1 HETATM 23 N N DDF . . . B 2 32.766 42.228 3.922 1 25.25 ? N DDF 161 A 1 HETATM 24 C CA DDF . . . B 2 32.836 41.487 2.649 1 24.85 ? CA DDF 161 A 1 HETATM 25 C CB DDF . . . B 2 33.779 40.315 3.06 1 26.72 ? CB DDF 161 A 1 HETATM 26 C CG DDF . . . B 2 34.87 39.832 1.966 1 46.09 ? CG DDF 161 A 1 HETATM 27 C CD DDF . . . B 2 34.68 38.302 1.836 1 69.09 ? CD DDF 161 A 1 HETATM 28 O OE1 DDF . . . B 2 33.594 37.955 2.4 1 81.9 ? OE1 DDF 161 A 1 HETATM 29 O OE2 DDF . . . B 2 35.493 37.544 1.272 1 84.68 ? OE2 DDF 161 A 1 HETATM 30 C CT DDF . . . B 2 31.392 41.115 2.265 1 17.21 ? CT DDF 161 A 1 HETATM 31 O O1 DDF . . . B 2 30.502 41.06 3.134 1 28.68 ? O1 DDF 161 A 1 HETATM 32 O O2 DDF . . . B 2 31.116 41.101 1.046 1 26.11 ? O2 DDF 161 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #