data_1RX6 # _model_server_result.job_id U-lxhkgHi7iKWlLxlw2Aww _model_server_result.datetime_utc '2025-02-17 09:13:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rx6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":161}' # _entry.id 1RX6 # _exptl.entry_id 1RX6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 443.453 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5,10-DIDEAZATETRAHYDROFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RX6 _cell.length_a 34.908 _cell.length_b 45.289 _cell.length_c 101.07 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RX6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 152 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 152 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id S2 _struct_conn.ptnr2_label_comp_id BME _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BME _struct_conn.ptnr2_auth_seq_id 162 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.03 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H25 N5 O6' _chem_comp.formula_weight 443.453 _chem_comp.id DDF _chem_comp.mon_nstd_flag . _chem_comp.name '5,10-DIDEAZATETRAHYDROFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DDF sing 92 n y N1 C8A DDF sing 93 n y N1 HN1 DDF sing 94 n n C2 NA2 DDF sing 95 n n C2 N3 DDF doub 96 n y NA2 HN21 DDF sing 97 n n NA2 HN22 DDF sing 98 n n N3 C4 DDF sing 99 n y C4 O4 DDF doub 100 n n C4 C4A DDF sing 101 n y C4A C5 DDF sing 102 n n C4A C8A DDF doub 103 n y C5 C6 DDF sing 104 n n C5 H51 DDF sing 105 n n C5 H52 DDF sing 106 n n C6 C7 DDF sing 107 n n C6 C9 DDF sing 108 n n C6 H6 DDF sing 109 n n C7 N8 DDF sing 110 n n C7 H71 DDF sing 111 n n C7 H72 DDF sing 112 n n N8 C8A DDF sing 113 n n N8 HN8 DDF sing 114 n n C9 C10 DDF sing 115 n n C9 H91 DDF sing 116 n n C9 H92 DDF sing 117 n n C10 C14 DDF sing 118 n n C10 H101 DDF sing 119 n n C10 H102 DDF sing 120 n n C11 C12 DDF doub 121 n y C11 C16 DDF sing 122 n y C11 C DDF sing 123 n n C12 C13 DDF sing 124 n y C12 H12 DDF sing 125 n n C13 C14 DDF doub 126 n y C13 H13 DDF sing 127 n n C14 C15 DDF sing 128 n y C15 C16 DDF doub 129 n y C15 H15 DDF sing 130 n n C16 H16 DDF sing 131 n n C O DDF doub 132 n n C N DDF sing 133 n n N CA DDF sing 134 n n N HN DDF sing 135 n n CA CB DDF sing 136 n n CA CT DDF sing 137 n n CA HA DDF sing 138 n n CB CG DDF sing 139 n n CB HB1 DDF sing 140 n n CB HB2 DDF sing 141 n n CG CD DDF sing 142 n n CG HG1 DDF sing 143 n n CG HG2 DDF sing 144 n n CD OE1 DDF doub 145 n n CD OE2 DDF sing 146 n n OE2 HOE2 DDF sing 147 n n CT O1 DDF doub 148 n n CT O2 DDF sing 149 n n O2 HO2 DDF sing 150 n n # _atom_sites.entry_id 1RX6 _atom_sites.fract_transf_matrix[1][1] 0.028647 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02208 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DDF A 1 161 161 DDF DDF . C 3 BME A 1 162 162 BME BME . D 4 NAP A 1 164 164 NAP NAP . E 5 HOH A 1 301 301 HOH HOH . E 5 HOH A 2 302 302 HOH HOH . E 5 HOH A 3 303 303 HOH HOH . E 5 HOH A 4 304 304 HOH HOH . E 5 HOH A 5 305 305 HOH HOH . E 5 HOH A 6 306 306 HOH HOH . E 5 HOH A 7 307 307 HOH HOH . E 5 HOH A 8 308 308 HOH HOH . E 5 HOH A 9 309 309 HOH HOH . E 5 HOH A 10 310 310 HOH HOH . E 5 HOH A 11 311 311 HOH HOH . E 5 HOH A 12 312 312 HOH HOH . E 5 HOH A 13 313 313 HOH HOH . E 5 HOH A 14 314 314 HOH HOH . E 5 HOH A 15 315 315 HOH HOH . E 5 HOH A 16 316 316 HOH HOH . E 5 HOH A 17 317 317 HOH HOH . E 5 HOH A 18 318 318 HOH HOH . E 5 HOH A 19 319 319 HOH HOH . E 5 HOH A 20 320 320 HOH HOH . E 5 HOH A 21 321 321 HOH HOH . E 5 HOH A 22 322 322 HOH HOH . E 5 HOH A 23 323 323 HOH HOH . E 5 HOH A 24 324 324 HOH HOH . E 5 HOH A 25 325 325 HOH HOH . E 5 HOH A 26 326 326 HOH HOH . E 5 HOH A 27 327 327 HOH HOH . E 5 HOH A 28 328 328 HOH HOH . E 5 HOH A 29 329 329 HOH HOH . E 5 HOH A 30 331 331 HOH HOH . E 5 HOH A 31 332 332 HOH HOH . E 5 HOH A 32 333 333 HOH HOH . E 5 HOH A 33 334 334 HOH HOH . E 5 HOH A 34 335 335 HOH HOH . E 5 HOH A 35 336 336 HOH HOH . E 5 HOH A 36 337 337 HOH HOH . E 5 HOH A 37 338 338 HOH HOH . E 5 HOH A 38 339 339 HOH HOH . E 5 HOH A 39 340 340 HOH HOH . E 5 HOH A 40 341 341 HOH HOH . E 5 HOH A 41 342 342 HOH HOH . E 5 HOH A 42 343 343 HOH HOH . E 5 HOH A 43 344 344 HOH HOH . E 5 HOH A 44 345 345 HOH HOH . E 5 HOH A 45 346 346 HOH HOH . E 5 HOH A 46 347 347 HOH HOH . E 5 HOH A 47 348 348 HOH HOH . E 5 HOH A 48 349 349 HOH HOH . E 5 HOH A 49 350 350 HOH HOH . E 5 HOH A 50 352 352 HOH HOH . E 5 HOH A 51 353 353 HOH HOH . E 5 HOH A 52 354 354 HOH HOH . E 5 HOH A 53 355 355 HOH HOH . E 5 HOH A 54 356 356 HOH HOH . E 5 HOH A 55 357 357 HOH HOH . E 5 HOH A 56 358 358 HOH HOH . E 5 HOH A 57 359 359 HOH HOH . E 5 HOH A 58 360 360 HOH HOH . E 5 HOH A 59 361 361 HOH HOH . E 5 HOH A 60 362 362 HOH HOH . E 5 HOH A 61 363 363 HOH HOH . E 5 HOH A 62 364 364 HOH HOH . E 5 HOH A 63 365 365 HOH HOH . E 5 HOH A 64 366 366 HOH HOH . E 5 HOH A 65 367 367 HOH HOH . E 5 HOH A 66 368 368 HOH HOH . E 5 HOH A 67 369 369 HOH HOH . E 5 HOH A 68 370 370 HOH HOH . E 5 HOH A 69 371 371 HOH HOH . E 5 HOH A 70 372 372 HOH HOH . E 5 HOH A 71 373 373 HOH HOH . E 5 HOH A 72 374 374 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DDF . . . B 2 30.177 41.422 12.382 1 20.84 ? N1 DDF 161 A 1 HETATM 2 C C2 DDF . . . B 2 31.032 40.373 12.253 1 13.63 ? C2 DDF 161 A 1 HETATM 3 N NA2 DDF . . . B 2 30.655 39.141 12.252 1 13.9 ? NA2 DDF 161 A 1 HETATM 4 N N3 DDF . . . B 2 32.442 40.642 12.096 1 16.53 ? N3 DDF 161 A 1 HETATM 5 C C4 DDF . . . B 2 33.016 41.902 12.061 1 20.11 ? C4 DDF 161 A 1 HETATM 6 O O4 DDF . . . B 2 34.242 42.107 11.951 1 23.34 ? O4 DDF 161 A 1 HETATM 7 C C4A DDF . . . B 2 32.071 42.997 12.21 1 19.44 ? C4A DDF 161 A 1 HETATM 8 C C5 DDF . . . B 2 32.609 44.303 11.947 1 15.9 ? C5 DDF 161 A 1 HETATM 9 C C6 DDF . . . B 2 31.494 45.155 11.594 1 20.26 ? C6 DDF 161 A 1 HETATM 10 C C7 DDF . . . B 2 30.255 44.894 12.321 1 9.24 ? C7 DDF 161 A 1 HETATM 11 N N8 DDF . . . B 2 29.759 43.667 12.25 1 19.26 ? N8 DDF 161 A 1 HETATM 12 C C8A DDF . . . B 2 30.696 42.728 12.353 1 14.15 ? C8A DDF 161 A 1 HETATM 13 C C9 DDF . . . B 2 31.468 45.542 10.148 1 22.57 ? C9 DDF 161 A 1 HETATM 14 C C10 DDF . . . B 2 32.927 45.479 9.612 1 23.1 ? C10 DDF 161 A 1 HETATM 15 C C11 DDF . . . B 2 33.577 44.284 5.452 1 28.49 ? C11 DDF 161 A 1 HETATM 16 C C12 DDF . . . B 2 34.444 45.21 6.071 1 36.57 ? C12 DDF 161 A 1 HETATM 17 C C13 DDF . . . B 2 34.216 45.573 7.401 1 40.5 ? C13 DDF 161 A 1 HETATM 18 C C14 DDF . . . B 2 33.107 45.025 8.158 1 33.5 ? C14 DDF 161 A 1 HETATM 19 C C15 DDF . . . B 2 32.3 44.142 7.589 1 33.23 ? C15 DDF 161 A 1 HETATM 20 C C16 DDF . . . B 2 32.558 43.806 6.248 1 25.45 ? C16 DDF 161 A 1 HETATM 21 C C DDF . . . B 2 33.6 43.712 4.081 1 32.27 ? C DDF 161 A 1 HETATM 22 O O DDF . . . B 2 34.479 43.848 3.226 1 44.87 ? O DDF 161 A 1 HETATM 23 N N DDF . . . B 2 32.667 42.842 3.813 1 26.37 ? N DDF 161 A 1 HETATM 24 C CA DDF . . . B 2 32.673 42.058 2.552 1 26.2 ? CA DDF 161 A 1 HETATM 25 C CB DDF . . . B 2 33.482 40.779 2.873 1 28.56 ? CB DDF 161 A 1 HETATM 26 C CG DDF . . . B 2 34.731 40.523 1.87 1 48.88 ? CG DDF 161 A 1 HETATM 27 C CD DDF . . . B 2 34.819 38.978 1.559 1 74.18 ? CD DDF 161 A 1 HETATM 28 O OE1 DDF . . . B 2 33.902 38.31 2.158 1 74.42 ? OE1 DDF 161 A 1 HETATM 29 O OE2 DDF . . . B 2 35.684 38.48 0.799 1 94.93 ? OE2 DDF 161 A 1 HETATM 30 C CT DDF . . . B 2 31.266 41.749 2.202 1 26.6 ? CT DDF 161 A 1 HETATM 31 O O1 DDF . . . B 2 30.452 41.514 3.115 1 21.53 ? O1 DDF 161 A 1 HETATM 32 O O2 DDF . . . B 2 30.97 41.874 0.991 1 35.48 ? O2 DDF 161 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 346 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #