data_1RX8 # _model_server_result.job_id fX0GsYfJyOcDWs_5f1RPXA _model_server_result.datetime_utc '2024-11-23 14:15:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rx8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":164}' # _entry.id 1RX8 # _exptl.entry_id 1RX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RX8 _cell.length_a 34.43 _cell.length_b 45.035 _cell.length_c 99.259 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 152 A CYS 152 1_555 D S2 BME . A BME 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc1 A O ASP 116 A ASP 116 1_455 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc2 A O ARG 159 A ARG 159 1_555 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc3 B MN MN . A MN 300 1_555 F O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? metalc ? metalc4 B MN MN . A MN 300 1_555 F O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc5 B MN MN . A MN 300 1_555 F O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 299 n n PA O2A NAP sing 300 n n PA O5B NAP sing 301 n n PA O3 NAP sing 302 n n O2A HOA2 NAP sing 303 n n O5B C5B NAP sing 304 n n C5B C4B NAP sing 305 n n C5B H51A NAP sing 306 n n C5B H52A NAP sing 307 n n C4B O4B NAP sing 308 n n C4B C3B NAP sing 309 n n C4B H4B NAP sing 310 n n O4B C1B NAP sing 311 n n C3B O3B NAP sing 312 n n C3B C2B NAP sing 313 n n C3B H3B NAP sing 314 n n O3B HO3A NAP sing 315 n n C2B O2B NAP sing 316 n n C2B C1B NAP sing 317 n n C2B H2B NAP sing 318 n n O2B P2B NAP sing 319 n n C1B N9A NAP sing 320 n n C1B H1B NAP sing 321 n n N9A C8A NAP sing 322 n y N9A C4A NAP sing 323 n y C8A N7A NAP doub 324 n y C8A H8A NAP sing 325 n n N7A C5A NAP sing 326 n y C5A C6A NAP sing 327 n y C5A C4A NAP doub 328 n y C6A N6A NAP sing 329 n n C6A N1A NAP doub 330 n y N6A H61A NAP sing 331 n n N6A H62A NAP sing 332 n n N1A C2A NAP sing 333 n y C2A N3A NAP doub 334 n y C2A H2A NAP sing 335 n n N3A C4A NAP sing 336 n y O3 PN NAP sing 337 n n PN O1N NAP doub 338 n n PN O2N NAP sing 339 n n PN O5D NAP sing 340 n n O5D C5D NAP sing 341 n n C5D C4D NAP sing 342 n n C5D H51N NAP sing 343 n n C5D H52N NAP sing 344 n n C4D O4D NAP sing 345 n n C4D C3D NAP sing 346 n n C4D H4D NAP sing 347 n n O4D C1D NAP sing 348 n n C3D O3D NAP sing 349 n n C3D C2D NAP sing 350 n n C3D H3D NAP sing 351 n n O3D HO3N NAP sing 352 n n C2D O2D NAP sing 353 n n C2D C1D NAP sing 354 n n C2D H2D NAP sing 355 n n O2D HO2N NAP sing 356 n n C1D N1N NAP sing 357 n n C1D H1D NAP sing 358 n n N1N C2N NAP sing 359 n y N1N C6N NAP doub 360 n y C2N C3N NAP doub 361 n y C2N H2N NAP sing 362 n n C3N C7N NAP sing 363 n n C3N C4N NAP sing 364 n y C7N O7N NAP doub 365 n n C7N N7N NAP sing 366 n n N7N H71N NAP sing 367 n n N7N H72N NAP sing 368 n n C4N C5N NAP doub 369 n y C4N H4N NAP sing 370 n n C5N C6N NAP sing 371 n y C5N H5N NAP sing 372 n n C6N H6N NAP sing 373 n n P2B O1X NAP doub 374 n n P2B O2X NAP sing 375 n n P2B O3X NAP sing 376 n n O2X HOP2 NAP sing 377 n n O3X HOP3 NAP sing 378 n n # _atom_sites.entry_id 1RX8 _atom_sites.fract_transf_matrix[1][1] 0.029044 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010075 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 300 300 MN MN . C 3 FOL A 1 161 161 FOL FOL . D 4 BME A 1 162 162 BME BME . E 5 NAP A 1 164 164 NAP NAP . F 6 HOH A 1 301 301 HOH HOH . F 6 HOH A 2 302 302 HOH HOH . F 6 HOH A 3 303 303 HOH HOH . F 6 HOH A 4 304 304 HOH HOH . F 6 HOH A 5 307 307 HOH HOH . F 6 HOH A 6 308 308 HOH HOH . F 6 HOH A 7 309 309 HOH HOH . F 6 HOH A 8 311 311 HOH HOH . F 6 HOH A 9 312 312 HOH HOH . F 6 HOH A 10 314 314 HOH HOH . F 6 HOH A 11 315 315 HOH HOH . F 6 HOH A 12 318 318 HOH HOH . F 6 HOH A 13 319 319 HOH HOH . F 6 HOH A 14 320 320 HOH HOH . F 6 HOH A 15 321 321 HOH HOH . F 6 HOH A 16 322 322 HOH HOH . F 6 HOH A 17 323 323 HOH HOH . F 6 HOH A 18 324 324 HOH HOH . F 6 HOH A 19 326 326 HOH HOH . F 6 HOH A 20 327 327 HOH HOH . F 6 HOH A 21 328 328 HOH HOH . F 6 HOH A 22 329 329 HOH HOH . F 6 HOH A 23 330 330 HOH HOH . F 6 HOH A 24 331 331 HOH HOH . F 6 HOH A 25 332 332 HOH HOH . F 6 HOH A 26 333 333 HOH HOH . F 6 HOH A 27 336 336 HOH HOH . F 6 HOH A 28 337 337 HOH HOH . F 6 HOH A 29 338 338 HOH HOH . F 6 HOH A 30 339 339 HOH HOH . F 6 HOH A 31 340 340 HOH HOH . F 6 HOH A 32 341 341 HOH HOH . F 6 HOH A 33 342 342 HOH HOH . F 6 HOH A 34 343 343 HOH HOH . F 6 HOH A 35 344 344 HOH HOH . F 6 HOH A 36 345 345 HOH HOH . F 6 HOH A 37 346 346 HOH HOH . F 6 HOH A 38 347 347 HOH HOH . F 6 HOH A 39 348 348 HOH HOH . F 6 HOH A 40 349 349 HOH HOH . F 6 HOH A 41 350 350 HOH HOH . F 6 HOH A 42 351 351 HOH HOH . F 6 HOH A 43 352 352 HOH HOH . F 6 HOH A 44 354 354 HOH HOH . F 6 HOH A 45 355 355 HOH HOH . F 6 HOH A 46 356 356 HOH HOH . F 6 HOH A 47 358 358 HOH HOH . F 6 HOH A 48 359 359 HOH HOH . F 6 HOH A 49 360 360 HOH HOH . F 6 HOH A 50 361 361 HOH HOH . F 6 HOH A 51 362 362 HOH HOH . F 6 HOH A 52 363 363 HOH HOH . F 6 HOH A 53 367 367 HOH HOH . F 6 HOH A 54 368 368 HOH HOH . F 6 HOH A 55 369 369 HOH HOH . F 6 HOH A 56 371 371 HOH HOH . F 6 HOH A 57 372 372 HOH HOH . F 6 HOH A 58 373 373 HOH HOH . F 6 HOH A 59 374 374 HOH HOH . F 6 HOH A 60 376 376 HOH HOH . F 6 HOH A 61 377 377 HOH HOH . F 6 HOH A 62 378 378 HOH HOH . F 6 HOH A 63 379 379 HOH HOH . F 6 HOH A 64 380 380 HOH HOH . F 6 HOH A 65 381 381 HOH HOH . F 6 HOH A 66 382 382 HOH HOH . F 6 HOH A 67 383 383 HOH HOH . F 6 HOH A 68 384 384 HOH HOH . F 6 HOH A 69 385 385 HOH HOH . F 6 HOH A 70 386 386 HOH HOH . F 6 HOH A 71 387 387 HOH HOH . F 6 HOH A 72 388 388 HOH HOH . F 6 HOH A 73 389 389 HOH HOH . F 6 HOH A 74 391 391 HOH HOH . F 6 HOH A 75 392 392 HOH HOH . F 6 HOH A 76 393 393 HOH HOH . F 6 HOH A 77 394 394 HOH HOH . F 6 HOH A 78 395 395 HOH HOH . F 6 HOH A 79 396 396 HOH HOH . F 6 HOH A 80 397 397 HOH HOH . F 6 HOH A 81 398 398 HOH HOH . F 6 HOH A 82 399 399 HOH HOH . F 6 HOH A 83 400 400 HOH HOH . F 6 HOH A 84 401 401 HOH HOH . F 6 HOH A 85 402 402 HOH HOH . F 6 HOH A 86 403 403 HOH HOH . F 6 HOH A 87 404 404 HOH HOH . F 6 HOH A 88 405 405 HOH HOH . F 6 HOH A 89 406 406 HOH HOH . F 6 HOH A 90 407 407 HOH HOH . F 6 HOH A 91 408 408 HOH HOH . F 6 HOH A 92 409 409 HOH HOH . F 6 HOH A 93 410 410 HOH HOH . F 6 HOH A 94 411 411 HOH HOH . F 6 HOH A 95 413 413 HOH HOH . F 6 HOH A 96 414 414 HOH HOH . F 6 HOH A 97 416 416 HOH HOH . F 6 HOH A 98 417 417 HOH HOH . F 6 HOH A 99 418 418 HOH HOH . F 6 HOH A 100 419 419 HOH HOH . F 6 HOH A 101 420 420 HOH HOH . F 6 HOH A 102 421 421 HOH HOH . F 6 HOH A 103 422 422 HOH HOH . F 6 HOH A 104 423 423 HOH HOH . F 6 HOH A 105 424 424 HOH HOH . F 6 HOH A 106 425 425 HOH HOH . F 6 HOH A 107 426 426 HOH HOH . F 6 HOH A 108 427 427 HOH HOH . F 6 HOH A 109 428 428 HOH HOH . F 6 HOH A 110 429 429 HOH HOH . F 6 HOH A 111 430 430 HOH HOH . F 6 HOH A 112 431 431 HOH HOH . F 6 HOH A 113 432 432 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 5 29.906 53.585 14.565 1 42.31 ? PA NAP 164 A 1 HETATM 2 O O1A NAP . . . E 5 28.888 52.973 15.447 1 40.26 ? O1A NAP 164 A 1 HETATM 3 O O2A NAP . . . E 5 30.203 53.02 13.239 1 21.48 ? O2A NAP 164 A 1 HETATM 4 O O5B NAP . . . E 5 29.657 55.163 14.505 1 59.87 ? O5B NAP 164 A 1 HETATM 5 C C5B NAP . . . E 5 28.803 55.851 15.475 1 68.06 ? C5B NAP 164 A 1 HETATM 6 C C4B NAP . . . E 5 28.004 57.025 14.941 1 70.03 ? C4B NAP 164 A 1 HETATM 7 O O4B NAP . . . E 5 26.942 56.896 13.965 1 65.21 ? O4B NAP 164 A 1 HETATM 8 C C3B NAP . . . E 5 27.826 58.365 15.642 1 79.28 ? C3B NAP 164 A 1 HETATM 9 O O3B NAP . . . E 5 28.998 59.014 16.078 1 86.17 ? O3B NAP 164 A 1 HETATM 10 C C2B NAP . . . E 5 26.861 59.137 14.721 1 75.4 ? C2B NAP 164 A 1 HETATM 11 O O2B NAP . . . E 5 27.374 59.683 13.519 1 72.51 ? O2B NAP 164 A 1 HETATM 12 C C1B NAP . . . E 5 26.051 57.966 14.168 1 70.63 ? C1B NAP 164 A 1 HETATM 13 N N9A NAP . . . E 5 24.849 57.63 14.946 1 74.42 ? N9A NAP 164 A 1 HETATM 14 C C8A NAP . . . E 5 24.683 56.649 15.904 1 70.07 ? C8A NAP 164 A 1 HETATM 15 N N7A NAP . . . E 5 23.452 56.621 16.389 1 70.23 ? N7A NAP 164 A 1 HETATM 16 C C5A NAP . . . E 5 22.748 57.657 15.705 1 71.24 ? C5A NAP 164 A 1 HETATM 17 C C6A NAP . . . E 5 21.378 58.165 15.743 1 62.75 ? C6A NAP 164 A 1 HETATM 18 N N6A NAP . . . E 5 20.401 57.689 16.549 1 50.24 ? N6A NAP 164 A 1 HETATM 19 N N1A NAP . . . E 5 21.048 59.202 14.911 1 66.74 ? N1A NAP 164 A 1 HETATM 20 C C2A NAP . . . E 5 21.998 59.714 14.107 1 73.06 ? C2A NAP 164 A 1 HETATM 21 N N3A NAP . . . E 5 23.287 59.332 13.981 1 79.33 ? N3A NAP 164 A 1 HETATM 22 C C4A NAP . . . E 5 23.61 58.292 14.809 1 76.42 ? C4A NAP 164 A 1 HETATM 23 O O3 NAP . . . E 5 31.264 53.655 15.408 1 74.88 ? O3 NAP 164 A 1 HETATM 24 P PN NAP . . . E 5 31.77 53.212 16.899 1 89.1 ? PN NAP 164 A 1 HETATM 25 O O1N NAP . . . E 5 30.62 53.256 17.833 1 90.14 ? O1N NAP 164 A 1 HETATM 26 O O2N NAP . . . E 5 32.954 54.021 17.303 1 92.01 ? O2N NAP 164 A 1 HETATM 27 O O5D NAP . . . E 5 32.257 51.744 16.523 1 80.81 ? O5D NAP 164 A 1 HETATM 28 P P2B NAP . . . E 5 27.737 61.226 13.504 1 66.07 ? P2B NAP 164 A 1 HETATM 29 O O1X NAP . . . E 5 28.179 61.46 12.007 1 74.52 ? O1X NAP 164 A 1 HETATM 30 O O2X NAP . . . E 5 26.501 61.939 13.961 1 59.91 ? O2X NAP 164 A 1 HETATM 31 O O3X NAP . . . E 5 28.916 61.351 14.458 1 58.87 ? O3X NAP 164 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #