data_1RX8
#
_model_server_result.job_id            NuG6kmGqRMBbUT5SOjgZHg 
_model_server_result.datetime_utc      '2024-11-04 20:27:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rx8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":164}' 
#
_entry.id    1RX8 
#
_exptl.entry_id    1RX8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RX8 
_cell.length_a            34.43 
_cell.length_b            45.035 
_cell.length_c            99.259 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RX8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 152 A CYS 152 1_555 D S2 BME . A BME 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc1 A O ASP 116 A ASP 116 1_455 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? 
metalc ? metalc2 A O ARG 159 A ARG 159 1_555 B MN MN . A MN 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc3 B MN MN . A MN 300 1_555 F O HOH . A HOH 383 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.924 ? 
metalc ? metalc4 B MN MN . A MN 300 1_555 F O HOH . A HOH 424 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc5 B MN MN . A MN 300 1_555 F O HOH . A HOH 425 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 299 n n 
PA O2A NAP sing 300 n n 
PA O5B NAP sing 301 n n 
PA O3 NAP sing 302 n n 
O2A HOA2 NAP sing 303 n n 
O5B C5B NAP sing 304 n n 
C5B C4B NAP sing 305 n n 
C5B H51A NAP sing 306 n n 
C5B H52A NAP sing 307 n n 
C4B O4B NAP sing 308 n n 
C4B C3B NAP sing 309 n n 
C4B H4B NAP sing 310 n n 
O4B C1B NAP sing 311 n n 
C3B O3B NAP sing 312 n n 
C3B C2B NAP sing 313 n n 
C3B H3B NAP sing 314 n n 
O3B HO3A NAP sing 315 n n 
C2B O2B NAP sing 316 n n 
C2B C1B NAP sing 317 n n 
C2B H2B NAP sing 318 n n 
O2B P2B NAP sing 319 n n 
C1B N9A NAP sing 320 n n 
C1B H1B NAP sing 321 n n 
N9A C8A NAP sing 322 n y 
N9A C4A NAP sing 323 n y 
C8A N7A NAP doub 324 n y 
C8A H8A NAP sing 325 n n 
N7A C5A NAP sing 326 n y 
C5A C6A NAP sing 327 n y 
C5A C4A NAP doub 328 n y 
C6A N6A NAP sing 329 n n 
C6A N1A NAP doub 330 n y 
N6A H61A NAP sing 331 n n 
N6A H62A NAP sing 332 n n 
N1A C2A NAP sing 333 n y 
C2A N3A NAP doub 334 n y 
C2A H2A NAP sing 335 n n 
N3A C4A NAP sing 336 n y 
O3 PN NAP sing 337 n n 
PN O1N NAP doub 338 n n 
PN O2N NAP sing 339 n n 
PN O5D NAP sing 340 n n 
O5D C5D NAP sing 341 n n 
C5D C4D NAP sing 342 n n 
C5D H51N NAP sing 343 n n 
C5D H52N NAP sing 344 n n 
C4D O4D NAP sing 345 n n 
C4D C3D NAP sing 346 n n 
C4D H4D NAP sing 347 n n 
O4D C1D NAP sing 348 n n 
C3D O3D NAP sing 349 n n 
C3D C2D NAP sing 350 n n 
C3D H3D NAP sing 351 n n 
O3D HO3N NAP sing 352 n n 
C2D O2D NAP sing 353 n n 
C2D C1D NAP sing 354 n n 
C2D H2D NAP sing 355 n n 
O2D HO2N NAP sing 356 n n 
C1D N1N NAP sing 357 n n 
C1D H1D NAP sing 358 n n 
N1N C2N NAP sing 359 n y 
N1N C6N NAP doub 360 n y 
C2N C3N NAP doub 361 n y 
C2N H2N NAP sing 362 n n 
C3N C7N NAP sing 363 n n 
C3N C4N NAP sing 364 n y 
C7N O7N NAP doub 365 n n 
C7N N7N NAP sing 366 n n 
N7N H71N NAP sing 367 n n 
N7N H72N NAP sing 368 n n 
C4N C5N NAP doub 369 n y 
C4N H4N NAP sing 370 n n 
C5N C6N NAP sing 371 n y 
C5N H5N NAP sing 372 n n 
C6N H6N NAP sing 373 n n 
P2B O1X NAP doub 374 n n 
P2B O2X NAP sing 375 n n 
P2B O3X NAP sing 376 n n 
O2X HOP2 NAP sing 377 n n 
O3X HOP3 NAP sing 378 n n 
#
_atom_sites.entry_id                     1RX8 
_atom_sites.fract_transf_matrix[1][1]    0.029044 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022205 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010075 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MN A 1 300 300 MN MN . 
C 3 FOL A 1 161 161 FOL FOL . 
D 4 BME A 1 162 162 BME BME . 
E 5 NAP A 1 164 164 NAP NAP . 
F 6 HOH A 1 301 301 HOH HOH . 
F 6 HOH A 2 302 302 HOH HOH . 
F 6 HOH A 3 303 303 HOH HOH . 
F 6 HOH A 4 304 304 HOH HOH . 
F 6 HOH A 5 307 307 HOH HOH . 
F 6 HOH A 6 308 308 HOH HOH . 
F 6 HOH A 7 309 309 HOH HOH . 
F 6 HOH A 8 311 311 HOH HOH . 
F 6 HOH A 9 312 312 HOH HOH . 
F 6 HOH A 10 314 314 HOH HOH . 
F 6 HOH A 11 315 315 HOH HOH . 
F 6 HOH A 12 318 318 HOH HOH . 
F 6 HOH A 13 319 319 HOH HOH . 
F 6 HOH A 14 320 320 HOH HOH . 
F 6 HOH A 15 321 321 HOH HOH . 
F 6 HOH A 16 322 322 HOH HOH . 
F 6 HOH A 17 323 323 HOH HOH . 
F 6 HOH A 18 324 324 HOH HOH . 
F 6 HOH A 19 326 326 HOH HOH . 
F 6 HOH A 20 327 327 HOH HOH . 
F 6 HOH A 21 328 328 HOH HOH . 
F 6 HOH A 22 329 329 HOH HOH . 
F 6 HOH A 23 330 330 HOH HOH . 
F 6 HOH A 24 331 331 HOH HOH . 
F 6 HOH A 25 332 332 HOH HOH . 
F 6 HOH A 26 333 333 HOH HOH . 
F 6 HOH A 27 336 336 HOH HOH . 
F 6 HOH A 28 337 337 HOH HOH . 
F 6 HOH A 29 338 338 HOH HOH . 
F 6 HOH A 30 339 339 HOH HOH . 
F 6 HOH A 31 340 340 HOH HOH . 
F 6 HOH A 32 341 341 HOH HOH . 
F 6 HOH A 33 342 342 HOH HOH . 
F 6 HOH A 34 343 343 HOH HOH . 
F 6 HOH A 35 344 344 HOH HOH . 
F 6 HOH A 36 345 345 HOH HOH . 
F 6 HOH A 37 346 346 HOH HOH . 
F 6 HOH A 38 347 347 HOH HOH . 
F 6 HOH A 39 348 348 HOH HOH . 
F 6 HOH A 40 349 349 HOH HOH . 
F 6 HOH A 41 350 350 HOH HOH . 
F 6 HOH A 42 351 351 HOH HOH . 
F 6 HOH A 43 352 352 HOH HOH . 
F 6 HOH A 44 354 354 HOH HOH . 
F 6 HOH A 45 355 355 HOH HOH . 
F 6 HOH A 46 356 356 HOH HOH . 
F 6 HOH A 47 358 358 HOH HOH . 
F 6 HOH A 48 359 359 HOH HOH . 
F 6 HOH A 49 360 360 HOH HOH . 
F 6 HOH A 50 361 361 HOH HOH . 
F 6 HOH A 51 362 362 HOH HOH . 
F 6 HOH A 52 363 363 HOH HOH . 
F 6 HOH A 53 367 367 HOH HOH . 
F 6 HOH A 54 368 368 HOH HOH . 
F 6 HOH A 55 369 369 HOH HOH . 
F 6 HOH A 56 371 371 HOH HOH . 
F 6 HOH A 57 372 372 HOH HOH . 
F 6 HOH A 58 373 373 HOH HOH . 
F 6 HOH A 59 374 374 HOH HOH . 
F 6 HOH A 60 376 376 HOH HOH . 
F 6 HOH A 61 377 377 HOH HOH . 
F 6 HOH A 62 378 378 HOH HOH . 
F 6 HOH A 63 379 379 HOH HOH . 
F 6 HOH A 64 380 380 HOH HOH . 
F 6 HOH A 65 381 381 HOH HOH . 
F 6 HOH A 66 382 382 HOH HOH . 
F 6 HOH A 67 383 383 HOH HOH . 
F 6 HOH A 68 384 384 HOH HOH . 
F 6 HOH A 69 385 385 HOH HOH . 
F 6 HOH A 70 386 386 HOH HOH . 
F 6 HOH A 71 387 387 HOH HOH . 
F 6 HOH A 72 388 388 HOH HOH . 
F 6 HOH A 73 389 389 HOH HOH . 
F 6 HOH A 74 391 391 HOH HOH . 
F 6 HOH A 75 392 392 HOH HOH . 
F 6 HOH A 76 393 393 HOH HOH . 
F 6 HOH A 77 394 394 HOH HOH . 
F 6 HOH A 78 395 395 HOH HOH . 
F 6 HOH A 79 396 396 HOH HOH . 
F 6 HOH A 80 397 397 HOH HOH . 
F 6 HOH A 81 398 398 HOH HOH . 
F 6 HOH A 82 399 399 HOH HOH . 
F 6 HOH A 83 400 400 HOH HOH . 
F 6 HOH A 84 401 401 HOH HOH . 
F 6 HOH A 85 402 402 HOH HOH . 
F 6 HOH A 86 403 403 HOH HOH . 
F 6 HOH A 87 404 404 HOH HOH . 
F 6 HOH A 88 405 405 HOH HOH . 
F 6 HOH A 89 406 406 HOH HOH . 
F 6 HOH A 90 407 407 HOH HOH . 
F 6 HOH A 91 408 408 HOH HOH . 
F 6 HOH A 92 409 409 HOH HOH . 
F 6 HOH A 93 410 410 HOH HOH . 
F 6 HOH A 94 411 411 HOH HOH . 
F 6 HOH A 95 413 413 HOH HOH . 
F 6 HOH A 96 414 414 HOH HOH . 
F 6 HOH A 97 416 416 HOH HOH . 
F 6 HOH A 98 417 417 HOH HOH . 
F 6 HOH A 99 418 418 HOH HOH . 
F 6 HOH A 100 419 419 HOH HOH . 
F 6 HOH A 101 420 420 HOH HOH . 
F 6 HOH A 102 421 421 HOH HOH . 
F 6 HOH A 103 422 422 HOH HOH . 
F 6 HOH A 104 423 423 HOH HOH . 
F 6 HOH A 105 424 424 HOH HOH . 
F 6 HOH A 106 425 425 HOH HOH . 
F 6 HOH A 107 426 426 HOH HOH . 
F 6 HOH A 108 427 427 HOH HOH . 
F 6 HOH A 109 428 428 HOH HOH . 
F 6 HOH A 110 429 429 HOH HOH . 
F 6 HOH A 111 430 430 HOH HOH . 
F 6 HOH A 112 431 431 HOH HOH . 
F 6 HOH A 113 432 432 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . E 5 29.906 53.585 14.565 1 42.31 ? PA NAP 164 A 1 
HETATM 2 O O1A NAP . . . E 5 28.888 52.973 15.447 1 40.26 ? O1A NAP 164 A 1 
HETATM 3 O O2A NAP . . . E 5 30.203 53.02 13.239 1 21.48 ? O2A NAP 164 A 1 
HETATM 4 O O5B NAP . . . E 5 29.657 55.163 14.505 1 59.87 ? O5B NAP 164 A 1 
HETATM 5 C C5B NAP . . . E 5 28.803 55.851 15.475 1 68.06 ? C5B NAP 164 A 1 
HETATM 6 C C4B NAP . . . E 5 28.004 57.025 14.941 1 70.03 ? C4B NAP 164 A 1 
HETATM 7 O O4B NAP . . . E 5 26.942 56.896 13.965 1 65.21 ? O4B NAP 164 A 1 
HETATM 8 C C3B NAP . . . E 5 27.826 58.365 15.642 1 79.28 ? C3B NAP 164 A 1 
HETATM 9 O O3B NAP . . . E 5 28.998 59.014 16.078 1 86.17 ? O3B NAP 164 A 1 
HETATM 10 C C2B NAP . . . E 5 26.861 59.137 14.721 1 75.4 ? C2B NAP 164 A 1 
HETATM 11 O O2B NAP . . . E 5 27.374 59.683 13.519 1 72.51 ? O2B NAP 164 A 1 
HETATM 12 C C1B NAP . . . E 5 26.051 57.966 14.168 1 70.63 ? C1B NAP 164 A 1 
HETATM 13 N N9A NAP . . . E 5 24.849 57.63 14.946 1 74.42 ? N9A NAP 164 A 1 
HETATM 14 C C8A NAP . . . E 5 24.683 56.649 15.904 1 70.07 ? C8A NAP 164 A 1 
HETATM 15 N N7A NAP . . . E 5 23.452 56.621 16.389 1 70.23 ? N7A NAP 164 A 1 
HETATM 16 C C5A NAP . . . E 5 22.748 57.657 15.705 1 71.24 ? C5A NAP 164 A 1 
HETATM 17 C C6A NAP . . . E 5 21.378 58.165 15.743 1 62.75 ? C6A NAP 164 A 1 
HETATM 18 N N6A NAP . . . E 5 20.401 57.689 16.549 1 50.24 ? N6A NAP 164 A 1 
HETATM 19 N N1A NAP . . . E 5 21.048 59.202 14.911 1 66.74 ? N1A NAP 164 A 1 
HETATM 20 C C2A NAP . . . E 5 21.998 59.714 14.107 1 73.06 ? C2A NAP 164 A 1 
HETATM 21 N N3A NAP . . . E 5 23.287 59.332 13.981 1 79.33 ? N3A NAP 164 A 1 
HETATM 22 C C4A NAP . . . E 5 23.61 58.292 14.809 1 76.42 ? C4A NAP 164 A 1 
HETATM 23 O O3 NAP . . . E 5 31.264 53.655 15.408 1 74.88 ? O3 NAP 164 A 1 
HETATM 24 P PN NAP . . . E 5 31.77 53.212 16.899 1 89.1 ? PN NAP 164 A 1 
HETATM 25 O O1N NAP . . . E 5 30.62 53.256 17.833 1 90.14 ? O1N NAP 164 A 1 
HETATM 26 O O2N NAP . . . E 5 32.954 54.021 17.303 1 92.01 ? O2N NAP 164 A 1 
HETATM 27 O O5D NAP . . . E 5 32.257 51.744 16.523 1 80.81 ? O5D NAP 164 A 1 
HETATM 28 P P2B NAP . . . E 5 27.737 61.226 13.504 1 66.07 ? P2B NAP 164 A 1 
HETATM 29 O O1X NAP . . . E 5 28.179 61.46 12.007 1 74.52 ? O1X NAP 164 A 1 
HETATM 30 O O2X NAP . . . E 5 26.501 61.939 13.961 1 59.91 ? O2X NAP 164 A 1 
HETATM 31 O O3X NAP . . . E 5 28.916 61.351 14.458 1 58.87 ? O3X NAP 164 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#