data_1RXE # _model_server_result.job_id V3oq2OjarGqUTqfpiMijcA _model_server_result.datetime_utc '2024-10-18 18:25:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rxe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":151}' # _entry.id 1RXE # _exptl.entry_id 1RXE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 199.184 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-MERCAPTO-2-NITRO-BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RXE _cell.length_a 33.146 _cell.length_b 34.377 _cell.length_c 102.325 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RXE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 89 A CYS 89 1_555 D S5 MNB . A MNB 151 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A OD1 ASN 13 A ASN 13 1_555 B K K . A K 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.852 ? metalc ? metalc2 A OE2 GLU 21 A GLU 21 1_555 B K K . A K 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc3 A O SER 36 A SER 36 1_555 B K K . A K 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc4 A OG SER 36 A SER 36 1_555 B K K . A K 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.939 ? metalc ? metalc5 A O THR 63 A THR 63 1_555 B K K . A K 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc6 A OD2 ASP 65 A ASP 65 1_555 B K K . A K 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc7 B K K . A K 152 1_555 E O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc8 B K K . A K 152 1_555 E O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.357 ? # _chem_comp.formula 'C7 H5 N O4 S' _chem_comp.formula_weight 199.184 _chem_comp.id MNB _chem_comp.mon_nstd_flag . _chem_comp.name '5-MERCAPTO-2-NITRO-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1RXE _atom_sites.fract_transf_matrix[1][1] 0.03017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 152 152 K K . C 3 LCP A 1 153 153 LCP LCP . D 4 MNB A 1 151 151 MNB MNB . E 5 HOH A 1 201 201 HOH HOH . E 5 HOH A 2 202 202 HOH HOH . E 5 HOH A 3 203 203 HOH HOH . E 5 HOH A 4 204 204 HOH HOH . E 5 HOH A 5 205 205 HOH HOH . E 5 HOH A 6 206 206 HOH HOH . E 5 HOH A 7 207 207 HOH HOH . E 5 HOH A 8 208 208 HOH HOH . E 5 HOH A 9 209 209 HOH HOH . E 5 HOH A 10 210 210 HOH HOH . E 5 HOH A 11 211 211 HOH HOH . E 5 HOH A 12 212 212 HOH HOH . E 5 HOH A 13 213 213 HOH HOH . E 5 HOH A 14 214 214 HOH HOH . E 5 HOH A 15 215 215 HOH HOH . E 5 HOH A 16 216 216 HOH HOH . E 5 HOH A 17 217 217 HOH HOH . E 5 HOH A 18 218 218 HOH HOH . E 5 HOH A 19 219 219 HOH HOH . E 5 HOH A 20 220 220 HOH HOH . E 5 HOH A 21 221 221 HOH HOH . E 5 HOH A 22 222 222 HOH HOH . E 5 HOH A 23 223 223 HOH HOH . E 5 HOH A 24 224 224 HOH HOH . E 5 HOH A 25 225 225 HOH HOH . E 5 HOH A 26 226 226 HOH HOH . E 5 HOH A 27 227 227 HOH HOH . E 5 HOH A 28 228 228 HOH HOH . E 5 HOH A 29 229 229 HOH HOH . E 5 HOH A 30 230 230 HOH HOH . E 5 HOH A 31 231 231 HOH HOH . E 5 HOH A 32 232 232 HOH HOH . E 5 HOH A 33 233 233 HOH HOH . E 5 HOH A 34 234 234 HOH HOH . E 5 HOH A 35 235 235 HOH HOH . E 5 HOH A 36 236 236 HOH HOH . E 5 HOH A 37 237 237 HOH HOH . E 5 HOH A 38 238 238 HOH HOH . E 5 HOH A 39 239 239 HOH HOH . E 5 HOH A 40 240 240 HOH HOH . E 5 HOH A 41 241 241 HOH HOH . E 5 HOH A 42 242 242 HOH HOH . E 5 HOH A 43 243 243 HOH HOH . E 5 HOH A 44 244 244 HOH HOH . E 5 HOH A 45 245 245 HOH HOH . E 5 HOH A 46 246 246 HOH HOH . E 5 HOH A 47 247 247 HOH HOH . E 5 HOH A 48 248 248 HOH HOH . E 5 HOH A 49 249 249 HOH HOH . E 5 HOH A 50 250 250 HOH HOH . E 5 HOH A 51 251 251 HOH HOH . E 5 HOH A 52 252 252 HOH HOH . E 5 HOH A 53 253 253 HOH HOH . E 5 HOH A 54 254 254 HOH HOH . E 5 HOH A 55 255 255 HOH HOH . E 5 HOH A 56 256 256 HOH HOH . E 5 HOH A 57 257 257 HOH HOH . E 5 HOH A 58 258 258 HOH HOH . E 5 HOH A 59 259 259 HOH HOH . E 5 HOH A 60 260 260 HOH HOH . E 5 HOH A 61 261 261 HOH HOH . E 5 HOH A 62 262 262 HOH HOH . E 5 HOH A 63 263 263 HOH HOH . E 5 HOH A 64 264 264 HOH HOH . E 5 HOH A 65 265 265 HOH HOH . E 5 HOH A 66 266 266 HOH HOH . E 5 HOH A 67 267 267 HOH HOH . E 5 HOH A 68 268 268 HOH HOH . E 5 HOH A 69 269 269 HOH HOH . E 5 HOH A 70 270 270 HOH HOH . E 5 HOH A 71 271 271 HOH HOH . E 5 HOH A 72 272 272 HOH HOH . E 5 HOH A 73 273 273 HOH HOH . E 5 HOH A 74 274 274 HOH HOH . E 5 HOH A 75 275 275 HOH HOH . E 5 HOH A 76 276 276 HOH HOH . E 5 HOH A 77 277 277 HOH HOH . E 5 HOH A 78 278 278 HOH HOH . E 5 HOH A 79 279 279 HOH HOH . E 5 HOH A 80 280 280 HOH HOH . E 5 HOH A 81 281 281 HOH HOH . E 5 HOH A 82 282 282 HOH HOH . E 5 HOH A 83 283 283 HOH HOH . E 5 HOH A 84 284 284 HOH HOH . E 5 HOH A 85 285 285 HOH HOH . E 5 HOH A 86 286 286 HOH HOH . E 5 HOH A 87 287 287 HOH HOH . E 5 HOH A 88 288 288 HOH HOH . E 5 HOH A 89 289 289 HOH HOH . E 5 HOH A 90 290 290 HOH HOH . E 5 HOH A 91 291 291 HOH HOH . E 5 HOH A 92 292 292 HOH HOH . E 5 HOH A 93 293 293 HOH HOH . E 5 HOH A 94 294 294 HOH HOH . E 5 HOH A 95 295 295 HOH HOH . E 5 HOH A 96 296 296 HOH HOH . E 5 HOH A 97 297 297 HOH HOH . E 5 HOH A 98 298 298 HOH HOH . E 5 HOH A 99 299 299 HOH HOH . E 5 HOH A 100 300 300 HOH HOH . E 5 HOH A 101 301 301 HOH HOH . E 5 HOH A 102 302 302 HOH HOH . E 5 HOH A 103 303 303 HOH HOH . E 5 HOH A 104 304 304 HOH HOH . E 5 HOH A 105 305 305 HOH HOH . E 5 HOH A 106 306 306 HOH HOH . E 5 HOH A 107 307 307 HOH HOH . E 5 HOH A 108 308 308 HOH HOH . E 5 HOH A 109 309 309 HOH HOH . E 5 HOH A 110 310 310 HOH HOH . E 5 HOH A 111 311 311 HOH HOH . E 5 HOH A 112 312 312 HOH HOH . E 5 HOH A 113 313 313 HOH HOH . E 5 HOH A 114 314 314 HOH HOH . E 5 HOH A 115 315 315 HOH HOH . E 5 HOH A 116 316 316 HOH HOH . E 5 HOH A 117 317 317 HOH HOH . E 5 HOH A 118 318 318 HOH HOH . E 5 HOH A 119 319 319 HOH HOH . E 5 HOH A 120 320 320 HOH HOH . E 5 HOH A 121 321 321 HOH HOH . E 5 HOH A 122 322 322 HOH HOH . E 5 HOH A 123 323 323 HOH HOH . E 5 HOH A 124 324 324 HOH HOH . E 5 HOH A 125 325 325 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 MNB . . . D 4 20.347 10.515 37.903 1 32.72 ? C6 MNB 151 A 1 HETATM 2 C C1 MNB . . . D 4 21.557 10.293 38.562 1 36.23 ? C1 MNB 151 A 1 HETATM 3 C C2 MNB . . . D 4 21.563 10.124 39.945 1 36.17 ? C2 MNB 151 A 1 HETATM 4 C C3 MNB . . . D 4 20.37 10.2 40.652 1 31.17 ? C3 MNB 151 A 1 HETATM 5 C C4 MNB . . . D 4 19.164 10.442 40 1 31.53 ? C4 MNB 151 A 1 HETATM 6 C C5 MNB . . . D 4 19.159 10.6 38.617 1 33.02 ? C5 MNB 151 A 1 HETATM 7 S S5 MNB . . . D 4 17.661 10.987 37.675 1 32.57 ? S5 MNB 151 A 1 HETATM 8 C C10 MNB . . . D 4 22.844 10.407 37.744 1 42.18 ? C10 MNB 151 A 1 HETATM 9 O O12 MNB . . . D 4 22.863 10.072 36.56 1 43.67 ? O12 MNB 151 A 1 HETATM 10 O O11 MNB . . . D 4 23.878 10.844 38.249 1 45.02 ? O11 MNB 151 A 1 HETATM 11 N N7 MNB . . . D 4 22.679 9.85 40.623 1 39.31 ? N7 MNB 151 A 1 HETATM 12 O O9 MNB . . . D 4 22.61 9.643 42.027 1 38.09 ? O9 MNB 151 A 1 HETATM 13 O O8 MNB . . . D 4 23.932 9.725 39.975 1 43.05 ? O8 MNB 151 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 13 #