data_1RXH # _model_server_result.job_id 5gaVMLTwMLwh9f6Lmig8Fg _model_server_result.datetime_utc '2024-11-09 01:54:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1RXH # _exptl.entry_id 1RXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.419 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1RXH _cell.length_a 56.385 _cell.length_b 56.385 _cell.length_c 238.571 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_775 -y+2,-x+2,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 56.385 97.661685 39.761833 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H20 N4 O4 S' _chem_comp.formula_weight 364.419 _chem_comp.id BNI _chem_comp.mon_nstd_flag . _chem_comp.name '5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BIOTINYL P-NITROANILINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C10 BNI sing 70 n n C1 O2 BNI doub 71 n n C1 N17 BNI sing 72 n n C10 C9 BNI sing 73 n n C10 H101 BNI sing 74 n n C10 H102 BNI sing 75 n n C9 C8 BNI sing 76 n n C9 H91 BNI sing 77 n n C9 H92 BNI sing 78 n n C8 C7 BNI sing 79 n n C8 H81 BNI sing 80 n n C8 H82 BNI sing 81 n n C7 C2 BNI sing 82 n n C7 H71 BNI sing 83 n n C7 H72 BNI sing 84 n n C2 C4 BNI sing 85 n n C2 S1 BNI sing 86 n n C2 H21A BNI sing 87 n n C6 C5 BNI sing 88 n n C6 S1 BNI sing 89 n n C6 H61 BNI sing 90 n n C6 H62 BNI sing 91 n n C4 C5 BNI sing 92 n n C4 N2 BNI sing 93 n n C4 HC4 BNI sing 94 n n C5 N1 BNI sing 95 n n C5 HC5 BNI sing 96 n n C3 O3 BNI doub 97 n n C3 N1 BNI sing 98 n n C3 N2 BNI sing 99 n n N1 HN11 BNI sing 100 n n N2 HN21 BNI sing 101 n n N17 C18 BNI sing 102 n n N17 H171 BNI sing 103 n n C18 C20 BNI doub 104 n y C18 C24 BNI sing 105 n y C20 C21 BNI sing 106 n y C20 H20 BNI sing 107 n n C21 C22 BNI doub 108 n y C21 H21 BNI sing 109 n n C22 C23 BNI sing 110 n y C22 N25 BNI sing 111 n n C23 C24 BNI doub 112 n y C23 H23 BNI sing 113 n n C24 H24 BNI sing 114 n n N25 O26 BNI doub 115 n n N25 O27 BNI sing 116 n n # _atom_sites.entry_id 1RXH _atom_sites.fract_transf_matrix[1][1] 0.017735 _atom_sites.fract_transf_matrix[1][2] 0.010239 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.020479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BNI A 1 501 501 BNI BNA . D 2 BNI B 1 502 502 BNI BNA . E 3 HOH A 1 601 601 HOH TIP . E 3 HOH A 2 607 607 HOH TIP . E 3 HOH A 3 608 608 HOH TIP . E 3 HOH A 4 610 610 HOH TIP . E 3 HOH A 5 611 611 HOH TIP . E 3 HOH A 6 612 612 HOH TIP . E 3 HOH A 7 613 613 HOH TIP . E 3 HOH A 8 616 616 HOH TIP . F 3 HOH B 1 602 602 HOH TIP . F 3 HOH B 2 603 603 HOH TIP . F 3 HOH B 3 604 604 HOH TIP . F 3 HOH B 4 605 605 HOH TIP . F 3 HOH B 5 606 606 HOH TIP . F 3 HOH B 6 609 609 HOH TIP . F 3 HOH B 7 614 614 HOH TIP . F 3 HOH B 8 615 615 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNI . . . D 2 35.611 35.857 4.602 1 44.63 ? C1 BNI 502 B 1 HETATM 2 C C10 BNI . . . D 2 34.267 35.637 5.309 1 41.05 ? C10 BNI 502 B 1 HETATM 3 C C9 BNI . . . D 2 33.315 36.804 5.385 1 37.85 ? C9 BNI 502 B 1 HETATM 4 C C8 BNI . . . D 2 33.539 37.489 6.689 1 35.54 ? C8 BNI 502 B 1 HETATM 5 C C7 BNI . . . D 2 32.251 37.855 7.369 1 34.91 ? C7 BNI 502 B 1 HETATM 6 C C2 BNI . . . D 2 32.611 38.54 8.708 1 34.83 ? C2 BNI 502 B 1 HETATM 7 C C6 BNI . . . D 2 32.887 38.684 11.138 1 35.86 ? C6 BNI 502 B 1 HETATM 8 C C4 BNI . . . D 2 31.525 39.522 9.208 1 32.96 ? C4 BNI 502 B 1 HETATM 9 C C5 BNI . . . D 2 31.742 39.608 10.732 1 33.76 ? C5 BNI 502 B 1 HETATM 10 C C3 BNI . . . D 2 29.637 38.836 10.294 1 35.03 ? C3 BNI 502 B 1 HETATM 11 O O2 BNI . . . D 2 35.506 35.551 3.391 1 51.72 ? O2 BNI 502 B 1 HETATM 12 O O3 BNI . . . D 2 28.491 38.42 10.507 1 35.9 ? O3 BNI 502 B 1 HETATM 13 N N1 BNI . . . D 2 30.495 39.158 11.257 1 34.08 ? N1 BNI 502 B 1 HETATM 14 N N2 BNI . . . D 2 30.17 39.02 9.082 1 32.93 ? N2 BNI 502 B 1 HETATM 15 S S1 BNI . . . D 2 32.791 37.247 9.986 1 31.94 ? S1 BNI 502 B 1 HETATM 16 N N17 BNI . . . D 2 36.394 36.879 4.959 1 43.5 ? N17 BNI 502 B 1 HETATM 17 C C18 BNI . . . D 2 37.62 37.285 4.535 1 43.09 ? C18 BNI 502 B 1 HETATM 18 C C20 BNI . . . D 2 38.586 36.422 3.846 1 44.05 ? C20 BNI 502 B 1 HETATM 19 C C21 BNI . . . D 2 39.893 36.975 3.443 1 45.91 ? C21 BNI 502 B 1 HETATM 20 C C22 BNI . . . D 2 40.217 38.405 3.743 1 48.61 ? C22 BNI 502 B 1 HETATM 21 C C23 BNI . . . D 2 39.225 39.233 4.439 1 47.18 ? C23 BNI 502 B 1 HETATM 22 C C24 BNI . . . D 2 37.957 38.679 4.823 1 43.13 ? C24 BNI 502 B 1 HETATM 23 N N25 BNI . . . D 2 41.578 39.05 3.333 1 50.41 ? N25 BNI 502 B 1 HETATM 24 O O26 BNI . . . D 2 42.451 38.409 2.738 1 49.13 ? O26 BNI 502 B 1 HETATM 25 O O27 BNI . . . D 2 41.815 40.229 3.592 1 47.97 ? O27 BNI 502 B 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #