data_1RXK # _model_server_result.job_id i8EqraftV67m8T63yP7zsA _model_server_result.datetime_utc '2024-12-23 16:02:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rxk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1RXK # _exptl.entry_id 1RXK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.419 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RXK _cell.length_a 80.335 _cell.length_b 81.579 _cell.length_c 90.532 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RXK _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 80.335 0 45.266 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C16 H20 N4 O4 S' _chem_comp.formula_weight 364.419 _chem_comp.id BNI _chem_comp.mon_nstd_flag . _chem_comp.name '5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'BIOTINYL P-NITROANILINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C10 BNI sing 70 n n C1 O2 BNI doub 71 n n C1 N17 BNI sing 72 n n C10 C9 BNI sing 73 n n C10 H101 BNI sing 74 n n C10 H102 BNI sing 75 n n C9 C8 BNI sing 76 n n C9 H91 BNI sing 77 n n C9 H92 BNI sing 78 n n C8 C7 BNI sing 79 n n C8 H81 BNI sing 80 n n C8 H82 BNI sing 81 n n C7 C2 BNI sing 82 n n C7 H71 BNI sing 83 n n C7 H72 BNI sing 84 n n C2 C4 BNI sing 85 n n C2 S1 BNI sing 86 n n C2 H21A BNI sing 87 n n C6 C5 BNI sing 88 n n C6 S1 BNI sing 89 n n C6 H61 BNI sing 90 n n C6 H62 BNI sing 91 n n C4 C5 BNI sing 92 n n C4 N2 BNI sing 93 n n C4 HC4 BNI sing 94 n n C5 N1 BNI sing 95 n n C5 HC5 BNI sing 96 n n C3 O3 BNI doub 97 n n C3 N1 BNI sing 98 n n C3 N2 BNI sing 99 n n N1 HN11 BNI sing 100 n n N2 HN21 BNI sing 101 n n N17 C18 BNI sing 102 n n N17 H171 BNI sing 103 n n C18 C20 BNI doub 104 n y C18 C24 BNI sing 105 n y C20 C21 BNI sing 106 n y C20 H20 BNI sing 107 n n C21 C22 BNI doub 108 n y C21 H21 BNI sing 109 n n C22 C23 BNI sing 110 n y C22 N25 BNI sing 111 n n C23 C24 BNI doub 112 n y C23 H23 BNI sing 113 n n C24 H24 BNI sing 114 n n N25 O26 BNI doub 115 n n N25 O27 BNI sing 116 n n # _atom_sites.entry_id 1RXK _atom_sites.fract_transf_matrix[1][1] 0.012448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012258 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011046 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BNI A 1 501 501 BNI BNI . D 2 BNI B 1 502 502 BNI BNI . E 3 HOH A 1 502 2 HOH HOH . E 3 HOH A 2 503 3 HOH HOH . E 3 HOH A 3 504 10 HOH HOH . E 3 HOH A 4 505 11 HOH HOH . E 3 HOH A 5 506 13 HOH HOH . E 3 HOH A 6 507 15 HOH HOH . E 3 HOH A 7 508 16 HOH HOH . E 3 HOH A 8 509 19 HOH HOH . E 3 HOH A 9 510 20 HOH HOH . E 3 HOH A 10 511 23 HOH HOH . E 3 HOH A 11 512 27 HOH HOH . E 3 HOH A 12 513 28 HOH HOH . E 3 HOH A 13 514 31 HOH HOH . E 3 HOH A 14 515 33 HOH HOH . E 3 HOH A 15 516 34 HOH HOH . E 3 HOH A 16 517 35 HOH HOH . E 3 HOH A 17 518 36 HOH HOH . E 3 HOH A 18 519 38 HOH HOH . E 3 HOH A 19 520 39 HOH HOH . E 3 HOH A 20 521 40 HOH HOH . E 3 HOH A 21 522 41 HOH HOH . E 3 HOH A 22 523 42 HOH HOH . E 3 HOH A 23 524 47 HOH HOH . E 3 HOH A 24 525 50 HOH HOH . E 3 HOH A 25 526 53 HOH HOH . E 3 HOH A 26 527 56 HOH HOH . E 3 HOH A 27 528 58 HOH HOH . E 3 HOH A 28 529 61 HOH HOH . E 3 HOH A 29 530 62 HOH HOH . E 3 HOH A 30 531 64 HOH HOH . E 3 HOH A 31 532 68 HOH HOH . E 3 HOH A 32 533 72 HOH HOH . E 3 HOH A 33 534 74 HOH HOH . E 3 HOH A 34 535 77 HOH HOH . E 3 HOH A 35 536 81 HOH HOH . E 3 HOH A 36 537 82 HOH HOH . E 3 HOH A 37 538 87 HOH HOH . E 3 HOH A 38 539 88 HOH HOH . E 3 HOH A 39 540 89 HOH HOH . E 3 HOH A 40 541 90 HOH HOH . E 3 HOH A 41 542 91 HOH HOH . E 3 HOH A 42 543 92 HOH HOH . E 3 HOH A 43 544 94 HOH HOH . E 3 HOH A 44 545 95 HOH HOH . E 3 HOH A 45 546 100 HOH HOH . E 3 HOH A 46 547 101 HOH HOH . E 3 HOH A 47 548 102 HOH HOH . E 3 HOH A 48 549 103 HOH HOH . E 3 HOH A 49 550 106 HOH HOH . E 3 HOH A 50 551 109 HOH HOH . E 3 HOH A 51 552 110 HOH HOH . E 3 HOH A 52 553 111 HOH HOH . E 3 HOH A 53 554 113 HOH HOH . E 3 HOH A 54 555 114 HOH HOH . E 3 HOH A 55 556 116 HOH HOH . E 3 HOH A 56 557 119 HOH HOH . E 3 HOH A 57 558 120 HOH HOH . E 3 HOH A 58 559 122 HOH HOH . E 3 HOH A 59 560 124 HOH HOH . E 3 HOH A 60 561 126 HOH HOH . E 3 HOH A 61 562 127 HOH HOH . E 3 HOH A 62 563 129 HOH HOH . E 3 HOH A 63 564 130 HOH HOH . E 3 HOH A 64 565 133 HOH HOH . E 3 HOH A 65 566 134 HOH HOH . E 3 HOH A 66 567 135 HOH HOH . E 3 HOH A 67 568 136 HOH HOH . E 3 HOH A 68 569 139 HOH HOH . E 3 HOH A 69 570 140 HOH HOH . E 3 HOH A 70 571 141 HOH HOH . E 3 HOH A 71 572 143 HOH HOH . E 3 HOH A 72 573 146 HOH HOH . E 3 HOH A 73 574 151 HOH HOH . E 3 HOH A 74 575 152 HOH HOH . E 3 HOH A 75 576 153 HOH HOH . E 3 HOH A 76 577 154 HOH HOH . F 3 HOH B 1 503 1 HOH HOH . F 3 HOH B 2 504 4 HOH HOH . F 3 HOH B 3 505 5 HOH HOH . F 3 HOH B 4 506 6 HOH HOH . F 3 HOH B 5 507 7 HOH HOH . F 3 HOH B 6 508 8 HOH HOH . F 3 HOH B 7 509 9 HOH HOH . F 3 HOH B 8 510 12 HOH HOH . F 3 HOH B 9 511 14 HOH HOH . F 3 HOH B 10 512 17 HOH HOH . F 3 HOH B 11 513 18 HOH HOH . F 3 HOH B 12 514 21 HOH HOH . F 3 HOH B 13 515 22 HOH HOH . F 3 HOH B 14 516 24 HOH HOH . F 3 HOH B 15 517 25 HOH HOH . F 3 HOH B 16 518 26 HOH HOH . F 3 HOH B 17 519 29 HOH HOH . F 3 HOH B 18 520 30 HOH HOH . F 3 HOH B 19 521 32 HOH HOH . F 3 HOH B 20 522 37 HOH HOH . F 3 HOH B 21 523 43 HOH HOH . F 3 HOH B 22 524 44 HOH HOH . F 3 HOH B 23 525 45 HOH HOH . F 3 HOH B 24 526 46 HOH HOH . F 3 HOH B 25 527 48 HOH HOH . F 3 HOH B 26 528 49 HOH HOH . F 3 HOH B 27 529 51 HOH HOH . F 3 HOH B 28 530 52 HOH HOH . F 3 HOH B 29 531 54 HOH HOH . F 3 HOH B 30 532 57 HOH HOH . F 3 HOH B 31 533 59 HOH HOH . F 3 HOH B 32 534 60 HOH HOH . F 3 HOH B 33 535 63 HOH HOH . F 3 HOH B 34 536 65 HOH HOH . F 3 HOH B 35 537 66 HOH HOH . F 3 HOH B 36 538 67 HOH HOH . F 3 HOH B 37 539 69 HOH HOH . F 3 HOH B 38 540 70 HOH HOH . F 3 HOH B 39 541 71 HOH HOH . F 3 HOH B 40 542 73 HOH HOH . F 3 HOH B 41 543 75 HOH HOH . F 3 HOH B 42 544 76 HOH HOH . F 3 HOH B 43 545 78 HOH HOH . F 3 HOH B 44 546 79 HOH HOH . F 3 HOH B 45 547 80 HOH HOH . F 3 HOH B 46 548 83 HOH HOH . F 3 HOH B 47 549 84 HOH HOH . F 3 HOH B 48 550 85 HOH HOH . F 3 HOH B 49 551 86 HOH HOH . F 3 HOH B 50 552 93 HOH HOH . F 3 HOH B 51 553 96 HOH HOH . F 3 HOH B 52 554 97 HOH HOH . F 3 HOH B 53 555 98 HOH HOH . F 3 HOH B 54 556 99 HOH HOH . F 3 HOH B 55 557 104 HOH HOH . F 3 HOH B 56 558 105 HOH HOH . F 3 HOH B 57 559 107 HOH HOH . F 3 HOH B 58 560 108 HOH HOH . F 3 HOH B 59 561 112 HOH HOH . F 3 HOH B 60 562 115 HOH HOH . F 3 HOH B 61 563 117 HOH HOH . F 3 HOH B 62 564 118 HOH HOH . F 3 HOH B 63 565 121 HOH HOH . F 3 HOH B 64 566 123 HOH HOH . F 3 HOH B 65 567 125 HOH HOH . F 3 HOH B 66 568 128 HOH HOH . F 3 HOH B 67 569 131 HOH HOH . F 3 HOH B 68 570 132 HOH HOH . F 3 HOH B 69 571 137 HOH HOH . F 3 HOH B 70 572 138 HOH HOH . F 3 HOH B 71 573 142 HOH HOH . F 3 HOH B 72 574 144 HOH HOH . F 3 HOH B 73 575 145 HOH HOH . F 3 HOH B 74 576 147 HOH HOH . F 3 HOH B 75 577 148 HOH HOH . F 3 HOH B 76 578 149 HOH HOH . F 3 HOH B 77 579 150 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BNI . . . D 2 30.842 5.814 36.718 1 19.66 ? C1 BNI 502 B 1 HETATM 2 C C10 BNI . . . D 2 29.601 5.061 36.157 1 17.87 ? C10 BNI 502 B 1 HETATM 3 C C9 BNI . . . D 2 29.888 3.653 35.648 1 16.76 ? C9 BNI 502 B 1 HETATM 4 C C8 BNI . . . D 2 30.652 3.687 34.329 1 16.7 ? C8 BNI 502 B 1 HETATM 5 C C7 BNI . . . D 2 30.911 2.283 33.79 1 14.39 ? C7 BNI 502 B 1 HETATM 6 C C2 BNI . . . D 2 31.886 2.234 32.571 1 13.97 ? C2 BNI 502 B 1 HETATM 7 C C6 BNI . . . D 2 32.47 2.32 30.139 1 12.65 ? C6 BNI 502 B 1 HETATM 8 C C4 BNI . . . D 2 32.359 0.801 32.144 1 15.37 ? C4 BNI 502 B 1 HETATM 9 C C5 BNI . . . D 2 32.735 0.9 30.661 1 12.47 ? C5 BNI 502 B 1 HETATM 10 C C3 BNI . . . D 2 31.103 -0.697 30.916 1 16.22 ? C3 BNI 502 B 1 HETATM 11 O O2 BNI . . . D 2 31.082 7.026 36.534 1 17.34 ? O2 BNI 502 B 1 HETATM 12 O O3 BNI . . . D 2 30.236 -1.568 30.613 1 16.08 ? O3 BNI 502 B 1 HETATM 13 N N1 BNI . . . D 2 31.924 -0.115 30.065 1 12.65 ? N1 BNI 502 B 1 HETATM 14 N N2 BNI . . . D 2 31.314 -0.225 32.145 1 12.41 ? N2 BNI 502 B 1 HETATM 15 S S1 BNI . . . D 2 31.045 2.929 31.091 1 13.23 ? S1 BNI 502 B 1 HETATM 16 N N17 BNI . . . D 2 31.67 5.089 37.456 1 22.36 ? N17 BNI 502 B 1 HETATM 17 C C18 BNI . . . D 2 32.865 5.34 38.054 1 29.63 ? C18 BNI 502 B 1 HETATM 18 C C20 BNI . . . D 2 33.343 4.496 39.098 1 31.71 ? C20 BNI 502 B 1 HETATM 19 C C21 BNI . . . D 2 34.607 4.801 39.73 1 36.23 ? C21 BNI 502 B 1 HETATM 20 C C22 BNI . . . D 2 35.374 5.958 39.27 1 36.73 ? C22 BNI 502 B 1 HETATM 21 C C23 BNI . . . D 2 34.879 6.797 38.224 1 35.72 ? C23 BNI 502 B 1 HETATM 22 C C24 BNI . . . D 2 33.635 6.505 37.604 1 31.66 ? C24 BNI 502 B 1 HETATM 23 N N25 BNI . . . D 2 36.704 6.295 39.917 1 42.19 ? N25 BNI 502 B 1 HETATM 24 O O26 BNI . . . D 2 37.185 5.634 40.792 1 44.4 ? O26 BNI 502 B 1 HETATM 25 O O27 BNI . . . D 2 37.332 7.238 39.551 1 45.52 ? O27 BNI 502 B 1 # _model_server_stats.io_time_ms 39 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 1308 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 25 #