data_1RYC
#
_model_server_result.job_id            rI3oLWHwRzpRyKwSL_evsw 
_model_server_result.datetime_utc      '2024-11-22 03:51:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ryc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":295}' 
#
_entry.id    1RYC 
#
_exptl.entry_id    1RYC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RYC 
_cell.length_a            108 
_cell.length_b            77.3 
_cell.length_c            51.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RYC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 B FE HEM . A HEM 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc2 B FE HEM . A HEM 295 1_555 D O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 145 n n 
CHA C4D HEM doub 146 n n 
CHA HHA HEM sing 147 n n 
CHB C4A HEM sing 148 n n 
CHB C1B HEM doub 149 n n 
CHB HHB HEM sing 150 n n 
CHC C4B HEM sing 151 n n 
CHC C1C HEM doub 152 n n 
CHC HHC HEM sing 153 n n 
CHD C4C HEM doub 154 n n 
CHD C1D HEM sing 155 n n 
CHD HHD HEM sing 156 n n 
C1A C2A HEM doub 157 n y 
C1A NA HEM sing 158 n y 
C2A C3A HEM sing 159 n y 
C2A CAA HEM sing 160 n n 
C3A C4A HEM doub 161 n y 
C3A CMA HEM sing 162 n n 
C4A NA HEM sing 163 n y 
CMA HMA HEM sing 164 n n 
CMA HMAA HEM sing 165 n n 
CMA HMAB HEM sing 166 n n 
CAA CBA HEM sing 167 n n 
CAA HAA HEM sing 168 n n 
CAA HAAA HEM sing 169 n n 
CBA CGA HEM sing 170 n n 
CBA HBA HEM sing 171 n n 
CBA HBAA HEM sing 172 n n 
CGA O1A HEM doub 173 n n 
CGA O2A HEM sing 174 n n 
C1B C2B HEM sing 175 n n 
C1B NB HEM sing 176 n n 
C2B C3B HEM doub 177 n n 
C2B CMB HEM sing 178 n n 
C3B C4B HEM sing 179 n n 
C3B CAB HEM sing 180 n n 
C4B NB HEM doub 181 n n 
CMB HMB HEM sing 182 n n 
CMB HMBA HEM sing 183 n n 
CMB HMBB HEM sing 184 n n 
CAB CBB HEM doub 185 n n 
CAB HAB HEM sing 186 n n 
CBB HBB HEM sing 187 n n 
CBB HBBA HEM sing 188 n n 
C1C C2C HEM sing 189 n y 
C1C NC HEM sing 190 n y 
C2C C3C HEM doub 191 n y 
C2C CMC HEM sing 192 n n 
C3C C4C HEM sing 193 n y 
C3C CAC HEM sing 194 n n 
C4C NC HEM sing 195 n y 
CMC HMC HEM sing 196 n n 
CMC HMCA HEM sing 197 n n 
CMC HMCB HEM sing 198 n n 
CAC CBC HEM doub 199 n n 
CAC HAC HEM sing 200 n n 
CBC HBC HEM sing 201 n n 
CBC HBCA HEM sing 202 n n 
C1D C2D HEM sing 203 n n 
C1D ND HEM doub 204 n n 
C2D C3D HEM doub 205 n n 
C2D CMD HEM sing 206 n n 
C3D C4D HEM sing 207 n n 
C3D CAD HEM sing 208 n n 
C4D ND HEM sing 209 n n 
CMD HMD HEM sing 210 n n 
CMD HMDA HEM sing 211 n n 
CMD HMDB HEM sing 212 n n 
CAD CBD HEM sing 213 n n 
CAD HAD HEM sing 214 n n 
CAD HADA HEM sing 215 n n 
CBD CGD HEM sing 216 n n 
CBD HBD HEM sing 217 n n 
CBD HBDA HEM sing 218 n n 
CGD O1D HEM doub 219 n n 
CGD O2D HEM sing 220 n n 
O2A H2A HEM sing 221 n n 
O2D H2D HEM sing 222 n n 
FE NA HEM sing 223 n n 
FE NB HEM sing 224 n n 
FE NC HEM sing 225 n n 
FE ND HEM sing 226 n n 
#
_atom_sites.entry_id                     1RYC 
_atom_sites.fract_transf_matrix[1][1]    0.009259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019305 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 295 1 HEM HEM . 
C 3 BZI A 1 296 295 BZI BZI . 
D 4 HOH A 1 300 300 HOH HOH . 
D 4 HOH A 2 301 301 HOH HOH . 
D 4 HOH A 3 302 302 HOH HOH . 
D 4 HOH A 4 304 304 HOH HOH . 
D 4 HOH A 5 305 305 HOH HOH . 
D 4 HOH A 6 306 306 HOH HOH . 
D 4 HOH A 7 307 307 HOH HOH . 
D 4 HOH A 8 309 309 HOH HOH . 
D 4 HOH A 9 310 310 HOH HOH . 
D 4 HOH A 10 311 311 HOH HOH . 
D 4 HOH A 11 312 312 HOH HOH . 
D 4 HOH A 12 313 313 HOH HOH . 
D 4 HOH A 13 314 314 HOH HOH . 
D 4 HOH A 14 315 315 HOH HOH . 
D 4 HOH A 15 316 316 HOH HOH . 
D 4 HOH A 16 317 317 HOH HOH . 
D 4 HOH A 17 318 318 HOH HOH . 
D 4 HOH A 18 319 319 HOH HOH . 
D 4 HOH A 19 320 320 HOH HOH . 
D 4 HOH A 20 321 321 HOH HOH . 
D 4 HOH A 21 322 322 HOH HOH . 
D 4 HOH A 22 323 323 HOH HOH . 
D 4 HOH A 23 324 324 HOH HOH . 
D 4 HOH A 24 325 325 HOH HOH . 
D 4 HOH A 25 327 327 HOH HOH . 
D 4 HOH A 26 328 328 HOH HOH . 
D 4 HOH A 27 329 329 HOH HOH . 
D 4 HOH A 28 330 330 HOH HOH . 
D 4 HOH A 29 331 331 HOH HOH . 
D 4 HOH A 30 332 332 HOH HOH . 
D 4 HOH A 31 333 333 HOH HOH . 
D 4 HOH A 32 334 334 HOH HOH . 
D 4 HOH A 33 335 335 HOH HOH . 
D 4 HOH A 34 336 336 HOH HOH . 
D 4 HOH A 35 337 337 HOH HOH . 
D 4 HOH A 36 338 338 HOH HOH . 
D 4 HOH A 37 339 339 HOH HOH . 
D 4 HOH A 38 340 340 HOH HOH . 
D 4 HOH A 39 341 341 HOH HOH . 
D 4 HOH A 40 342 342 HOH HOH . 
D 4 HOH A 41 344 344 HOH HOH . 
D 4 HOH A 42 345 345 HOH HOH . 
D 4 HOH A 43 346 346 HOH HOH . 
D 4 HOH A 44 347 347 HOH HOH . 
D 4 HOH A 45 348 348 HOH HOH . 
D 4 HOH A 46 349 349 HOH HOH . 
D 4 HOH A 47 350 350 HOH HOH . 
D 4 HOH A 48 355 355 HOH HOH . 
D 4 HOH A 49 356 356 HOH HOH . 
D 4 HOH A 50 357 357 HOH HOH . 
D 4 HOH A 51 358 358 HOH HOH . 
D 4 HOH A 52 359 359 HOH HOH . 
D 4 HOH A 53 406 406 HOH HOH . 
D 4 HOH A 54 407 407 HOH HOH . 
D 4 HOH A 55 408 408 HOH HOH . 
D 4 HOH A 56 409 409 HOH HOH . 
D 4 HOH A 57 410 410 HOH HOH . 
D 4 HOH A 58 411 411 HOH HOH . 
D 4 HOH A 59 412 412 HOH HOH . 
D 4 HOH A 60 413 413 HOH HOH . 
D 4 HOH A 61 414 414 HOH HOH . 
D 4 HOH A 62 415 415 HOH HOH . 
D 4 HOH A 63 416 416 HOH HOH . 
D 4 HOH A 64 417 417 HOH HOH . 
D 4 HOH A 65 418 418 HOH HOH . 
D 4 HOH A 66 419 419 HOH HOH . 
D 4 HOH A 67 420 420 HOH HOH . 
D 4 HOH A 68 421 421 HOH HOH . 
D 4 HOH A 69 422 422 HOH HOH . 
D 4 HOH A 70 423 423 HOH HOH . 
D 4 HOH A 71 424 424 HOH HOH . 
D 4 HOH A 72 425 425 HOH HOH . 
D 4 HOH A 73 426 426 HOH HOH . 
D 4 HOH A 74 427 427 HOH HOH . 
D 4 HOH A 75 428 428 HOH HOH . 
D 4 HOH A 76 429 429 HOH HOH . 
D 4 HOH A 77 430 430 HOH HOH . 
D 4 HOH A 78 431 431 HOH HOH . 
D 4 HOH A 79 432 432 HOH HOH . 
D 4 HOH A 80 433 433 HOH HOH . 
D 4 HOH A 81 434 434 HOH HOH . 
D 4 HOH A 82 435 435 HOH HOH . 
D 4 HOH A 83 436 436 HOH HOH . 
D 4 HOH A 84 437 437 HOH HOH . 
D 4 HOH A 85 438 438 HOH HOH . 
D 4 HOH A 86 439 439 HOH HOH . 
D 4 HOH A 87 440 440 HOH HOH . 
D 4 HOH A 88 441 441 HOH HOH . 
D 4 HOH A 89 443 443 HOH HOH . 
D 4 HOH A 90 444 444 HOH HOH . 
D 4 HOH A 91 445 445 HOH HOH . 
D 4 HOH A 92 446 446 HOH HOH . 
D 4 HOH A 93 447 447 HOH HOH . 
D 4 HOH A 94 448 448 HOH HOH . 
D 4 HOH A 95 449 449 HOH HOH . 
D 4 HOH A 96 450 450 HOH HOH . 
D 4 HOH A 97 451 451 HOH HOH . 
D 4 HOH A 98 452 452 HOH HOH . 
D 4 HOH A 99 453 453 HOH HOH . 
D 4 HOH A 100 454 454 HOH HOH . 
D 4 HOH A 101 455 455 HOH HOH . 
D 4 HOH A 102 456 456 HOH HOH . 
D 4 HOH A 103 457 457 HOH HOH . 
D 4 HOH A 104 458 458 HOH HOH . 
D 4 HOH A 105 459 459 HOH HOH . 
D 4 HOH A 106 460 460 HOH HOH . 
D 4 HOH A 107 461 461 HOH HOH . 
D 4 HOH A 108 462 462 HOH HOH . 
D 4 HOH A 109 463 463 HOH HOH . 
D 4 HOH A 110 464 464 HOH HOH . 
D 4 HOH A 111 465 465 HOH HOH . 
D 4 HOH A 112 466 466 HOH HOH . 
D 4 HOH A 113 467 467 HOH HOH . 
D 4 HOH A 114 468 468 HOH HOH . 
D 4 HOH A 115 469 469 HOH HOH . 
D 4 HOH A 116 470 470 HOH HOH . 
D 4 HOH A 117 471 471 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 27.979 96.107 50.261 1 10.32 ? CHA HEM 295 A 1 
HETATM 2 C CHB HEM . . . B 2 30.514 96.011 54.32 1 13.72 ? CHB HEM 295 A 1 
HETATM 3 C CHC HEM . . . B 2 28.389 91.892 55.58 1 10.24 ? CHC HEM 295 A 1 
HETATM 4 C CHD HEM . . . B 2 25.68 92.172 51.644 1 9 ? CHD HEM 295 A 1 
HETATM 5 C C1A HEM . . . B 2 28.91 96.467 51.249 1 14.77 ? C1A HEM 295 A 1 
HETATM 6 C C2A HEM . . . B 2 29.625 97.658 51.261 1 14.35 ? C2A HEM 295 A 1 
HETATM 7 C C3A HEM . . . B 2 30.372 97.632 52.435 1 13.22 ? C3A HEM 295 A 1 
HETATM 8 C C4A HEM . . . B 2 30.049 96.432 53.059 1 13.26 ? C4A HEM 295 A 1 
HETATM 9 C CMA HEM . . . B 2 31.382 98.66 52.91 1 8.84 ? CMA HEM 295 A 1 
HETATM 10 C CAA HEM . . . B 2 29.581 98.741 50.184 1 14.44 ? CAA HEM 295 A 1 
HETATM 11 C CBA HEM . . . B 2 28.443 99.765 50.352 1 13.01 ? CBA HEM 295 A 1 
HETATM 12 C CGA HEM . . . B 2 28.45 100.819 49.264 1 16.28 ? CGA HEM 295 A 1 
HETATM 13 O O1A HEM . . . B 2 29.415 101.553 49.101 1 19.07 ? O1A HEM 295 A 1 
HETATM 14 O O2A HEM . . . B 2 27.506 100.944 48.513 1 17.71 ? O2A HEM 295 A 1 
HETATM 15 C C1B HEM . . . B 2 30.189 94.862 55.066 1 15.09 ? C1B HEM 295 A 1 
HETATM 16 C C2B HEM . . . B 2 30.804 94.487 56.248 1 14.69 ? C2B HEM 295 A 1 
HETATM 17 C C3B HEM . . . B 2 30.246 93.237 56.564 1 14.26 ? C3B HEM 295 A 1 
HETATM 18 C C4B HEM . . . B 2 29.266 92.997 55.611 1 13.38 ? C4B HEM 295 A 1 
HETATM 19 C CMB HEM . . . B 2 31.904 95.307 56.939 1 15.14 ? CMB HEM 295 A 1 
HETATM 20 C CAB HEM . . . B 2 30.575 92.321 57.564 1 13.63 ? CAB HEM 295 A 1 
HETATM 21 C CBB HEM . . . B 2 31.689 92.395 58.494 1 15.29 ? CBB HEM 295 A 1 
HETATM 22 C C1C HEM . . . B 2 27.377 91.62 54.635 1 13.06 ? C1C HEM 295 A 1 
HETATM 23 C C2C HEM . . . B 2 26.489 90.555 54.735 1 12.14 ? C2C HEM 295 A 1 
HETATM 24 C C3C HEM . . . B 2 25.634 90.705 53.635 1 12.46 ? C3C HEM 295 A 1 
HETATM 25 C C4C HEM . . . B 2 26.136 91.776 52.901 1 11.61 ? C4C HEM 295 A 1 
HETATM 26 C CMC HEM . . . B 2 26.424 89.614 55.943 1 9.4 ? CMC HEM 295 A 1 
HETATM 27 C CAC HEM . . . B 2 24.474 90.005 53.26 1 12.53 ? CAC HEM 295 A 1 
HETATM 28 C CBC HEM . . . B 2 23.941 88.776 53.817 1 9.7 ? CBC HEM 295 A 1 
HETATM 29 C C1D HEM . . . B 2 26.106 93.231 50.848 1 12.04 ? C1D HEM 295 A 1 
HETATM 30 C C2D HEM . . . B 2 25.69 93.451 49.539 1 9.61 ? C2D HEM 295 A 1 
HETATM 31 C C3D HEM . . . B 2 26.357 94.604 49.128 1 9.73 ? C3D HEM 295 A 1 
HETATM 32 C C4D HEM . . . B 2 27.133 94.994 50.219 1 11.88 ? C4D HEM 295 A 1 
HETATM 33 C CMD HEM . . . B 2 24.723 92.59 48.722 1 10.4 ? CMD HEM 295 A 1 
HETATM 34 C CAD HEM . . . B 2 26.281 95.27 47.763 1 8.51 ? CAD HEM 295 A 1 
HETATM 35 C CBD HEM . . . B 2 25.306 96.45 47.734 1 11.1 ? CBD HEM 295 A 1 
HETATM 36 C CGD HEM . . . B 2 25.174 97.168 46.38 1 13.45 ? CGD HEM 295 A 1 
HETATM 37 O O1D HEM . . . B 2 24.64 98.272 46.321 1 15.99 ? O1D HEM 295 A 1 
HETATM 38 O O2D HEM . . . B 2 25.568 96.635 45.348 1 13.32 ? O2D HEM 295 A 1 
HETATM 39 N NA HEM . . . B 2 29.214 95.716 52.306 1 13.13 ? NA HEM 295 A 1 
HETATM 40 N NB HEM . . . B 2 29.261 93.965 54.688 1 13.11 ? NB HEM 295 A 1 
HETATM 41 N NC HEM . . . B 2 27.123 92.382 53.55 1 12.96 ? NC HEM 295 A 1 
HETATM 42 N ND HEM . . . B 2 26.998 94.144 51.237 1 12.18 ? ND HEM 295 A 1 
HETATM 43 FE FE HEM . . . B 2 28.173 94.061 52.935 1 12.84 ? FE HEM 295 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           244 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#