data_1RYC
#
_model_server_result.job_id            eeJydlzVYHUZrkpDa8a9Lg 
_model_server_result.datetime_utc      '2024-11-22 03:30:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ryc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":296}' 
#
_entry.id    1RYC 
#
_exptl.entry_id    1RYC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.136 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            BENZIMIDAZOLE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RYC 
_cell.length_a            108 
_cell.length_b            77.3 
_cell.length_c            51.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RYC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 B FE HEM . A HEM 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc2 B FE HEM . A HEM 295 1_555 D O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C7 H6 N2' 
_chem_comp.formula_weight    118.136 
_chem_comp.id                BZI 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              BENZIMIDAZOLE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 BZI sing 70 n y 
N1 C7A BZI sing 71 n y 
N1 HN1 BZI sing 72 n n 
C2 N3 BZI doub 73 n y 
C2 H2 BZI sing 74 n n 
N3 C3A BZI sing 75 n y 
C3A C4 BZI doub 76 n y 
C3A C7A BZI sing 77 n y 
C4 C5 BZI sing 78 n y 
C4 H4 BZI sing 79 n n 
C5 C6 BZI doub 80 n y 
C5 H5 BZI sing 81 n n 
C6 C7 BZI sing 82 n y 
C6 H6 BZI sing 83 n n 
C7 C7A BZI doub 84 n y 
C7 H7 BZI sing 85 n n 
#
_atom_sites.entry_id                     1RYC 
_atom_sites.fract_transf_matrix[1][1]    0.009259 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019305 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 295 1 HEM HEM . 
C 3 BZI A 1 296 295 BZI BZI . 
D 4 HOH A 1 300 300 HOH HOH . 
D 4 HOH A 2 301 301 HOH HOH . 
D 4 HOH A 3 302 302 HOH HOH . 
D 4 HOH A 4 304 304 HOH HOH . 
D 4 HOH A 5 305 305 HOH HOH . 
D 4 HOH A 6 306 306 HOH HOH . 
D 4 HOH A 7 307 307 HOH HOH . 
D 4 HOH A 8 309 309 HOH HOH . 
D 4 HOH A 9 310 310 HOH HOH . 
D 4 HOH A 10 311 311 HOH HOH . 
D 4 HOH A 11 312 312 HOH HOH . 
D 4 HOH A 12 313 313 HOH HOH . 
D 4 HOH A 13 314 314 HOH HOH . 
D 4 HOH A 14 315 315 HOH HOH . 
D 4 HOH A 15 316 316 HOH HOH . 
D 4 HOH A 16 317 317 HOH HOH . 
D 4 HOH A 17 318 318 HOH HOH . 
D 4 HOH A 18 319 319 HOH HOH . 
D 4 HOH A 19 320 320 HOH HOH . 
D 4 HOH A 20 321 321 HOH HOH . 
D 4 HOH A 21 322 322 HOH HOH . 
D 4 HOH A 22 323 323 HOH HOH . 
D 4 HOH A 23 324 324 HOH HOH . 
D 4 HOH A 24 325 325 HOH HOH . 
D 4 HOH A 25 327 327 HOH HOH . 
D 4 HOH A 26 328 328 HOH HOH . 
D 4 HOH A 27 329 329 HOH HOH . 
D 4 HOH A 28 330 330 HOH HOH . 
D 4 HOH A 29 331 331 HOH HOH . 
D 4 HOH A 30 332 332 HOH HOH . 
D 4 HOH A 31 333 333 HOH HOH . 
D 4 HOH A 32 334 334 HOH HOH . 
D 4 HOH A 33 335 335 HOH HOH . 
D 4 HOH A 34 336 336 HOH HOH . 
D 4 HOH A 35 337 337 HOH HOH . 
D 4 HOH A 36 338 338 HOH HOH . 
D 4 HOH A 37 339 339 HOH HOH . 
D 4 HOH A 38 340 340 HOH HOH . 
D 4 HOH A 39 341 341 HOH HOH . 
D 4 HOH A 40 342 342 HOH HOH . 
D 4 HOH A 41 344 344 HOH HOH . 
D 4 HOH A 42 345 345 HOH HOH . 
D 4 HOH A 43 346 346 HOH HOH . 
D 4 HOH A 44 347 347 HOH HOH . 
D 4 HOH A 45 348 348 HOH HOH . 
D 4 HOH A 46 349 349 HOH HOH . 
D 4 HOH A 47 350 350 HOH HOH . 
D 4 HOH A 48 355 355 HOH HOH . 
D 4 HOH A 49 356 356 HOH HOH . 
D 4 HOH A 50 357 357 HOH HOH . 
D 4 HOH A 51 358 358 HOH HOH . 
D 4 HOH A 52 359 359 HOH HOH . 
D 4 HOH A 53 406 406 HOH HOH . 
D 4 HOH A 54 407 407 HOH HOH . 
D 4 HOH A 55 408 408 HOH HOH . 
D 4 HOH A 56 409 409 HOH HOH . 
D 4 HOH A 57 410 410 HOH HOH . 
D 4 HOH A 58 411 411 HOH HOH . 
D 4 HOH A 59 412 412 HOH HOH . 
D 4 HOH A 60 413 413 HOH HOH . 
D 4 HOH A 61 414 414 HOH HOH . 
D 4 HOH A 62 415 415 HOH HOH . 
D 4 HOH A 63 416 416 HOH HOH . 
D 4 HOH A 64 417 417 HOH HOH . 
D 4 HOH A 65 418 418 HOH HOH . 
D 4 HOH A 66 419 419 HOH HOH . 
D 4 HOH A 67 420 420 HOH HOH . 
D 4 HOH A 68 421 421 HOH HOH . 
D 4 HOH A 69 422 422 HOH HOH . 
D 4 HOH A 70 423 423 HOH HOH . 
D 4 HOH A 71 424 424 HOH HOH . 
D 4 HOH A 72 425 425 HOH HOH . 
D 4 HOH A 73 426 426 HOH HOH . 
D 4 HOH A 74 427 427 HOH HOH . 
D 4 HOH A 75 428 428 HOH HOH . 
D 4 HOH A 76 429 429 HOH HOH . 
D 4 HOH A 77 430 430 HOH HOH . 
D 4 HOH A 78 431 431 HOH HOH . 
D 4 HOH A 79 432 432 HOH HOH . 
D 4 HOH A 80 433 433 HOH HOH . 
D 4 HOH A 81 434 434 HOH HOH . 
D 4 HOH A 82 435 435 HOH HOH . 
D 4 HOH A 83 436 436 HOH HOH . 
D 4 HOH A 84 437 437 HOH HOH . 
D 4 HOH A 85 438 438 HOH HOH . 
D 4 HOH A 86 439 439 HOH HOH . 
D 4 HOH A 87 440 440 HOH HOH . 
D 4 HOH A 88 441 441 HOH HOH . 
D 4 HOH A 89 443 443 HOH HOH . 
D 4 HOH A 90 444 444 HOH HOH . 
D 4 HOH A 91 445 445 HOH HOH . 
D 4 HOH A 92 446 446 HOH HOH . 
D 4 HOH A 93 447 447 HOH HOH . 
D 4 HOH A 94 448 448 HOH HOH . 
D 4 HOH A 95 449 449 HOH HOH . 
D 4 HOH A 96 450 450 HOH HOH . 
D 4 HOH A 97 451 451 HOH HOH . 
D 4 HOH A 98 452 452 HOH HOH . 
D 4 HOH A 99 453 453 HOH HOH . 
D 4 HOH A 100 454 454 HOH HOH . 
D 4 HOH A 101 455 455 HOH HOH . 
D 4 HOH A 102 456 456 HOH HOH . 
D 4 HOH A 103 457 457 HOH HOH . 
D 4 HOH A 104 458 458 HOH HOH . 
D 4 HOH A 105 459 459 HOH HOH . 
D 4 HOH A 106 460 460 HOH HOH . 
D 4 HOH A 107 461 461 HOH HOH . 
D 4 HOH A 108 462 462 HOH HOH . 
D 4 HOH A 109 463 463 HOH HOH . 
D 4 HOH A 110 464 464 HOH HOH . 
D 4 HOH A 111 465 465 HOH HOH . 
D 4 HOH A 112 466 466 HOH HOH . 
D 4 HOH A 113 467 467 HOH HOH . 
D 4 HOH A 114 468 468 HOH HOH . 
D 4 HOH A 115 469 469 HOH HOH . 
D 4 HOH A 116 470 470 HOH HOH . 
D 4 HOH A 117 471 471 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 BZI . . . C 3 33.609 92.859 48.673 1 26.66 ? N1 BZI 296 A 1 
HETATM 2 C C2 BZI . . . C 3 34.218 92.254 47.679 1 25.29 ? C2 BZI 296 A 1 
HETATM 3 N N3 BZI . . . C 3 33.497 92.366 46.587 1 26.76 ? N3 BZI 296 A 1 
HETATM 4 C C3A BZI . . . C 3 32.39 93.061 46.888 1 25.17 ? C3A BZI 296 A 1 
HETATM 5 C C4 BZI . . . C 3 31.293 93.451 46.155 1 23.19 ? C4 BZI 296 A 1 
HETATM 6 C C5 BZI . . . C 3 30.303 94.148 46.824 1 23.41 ? C5 BZI 296 A 1 
HETATM 7 C C6 BZI . . . C 3 30.394 94.455 48.175 1 21.78 ? C6 BZI 296 A 1 
HETATM 8 C C7 BZI . . . C 3 31.487 94.062 48.907 1 21.02 ? C7 BZI 296 A 1 
HETATM 9 C C7A BZI . . . C 3 32.469 93.368 48.234 1 24.87 ? C7A BZI 296 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           9 
#