data_1RYE # _model_server_result.job_id xemg-jv8te_8lyKJfglZkw _model_server_result.datetime_utc '2024-12-02 23:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":601}' # _entry.id 1RYE # _exptl.entry_id 1RYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.66 _cell.angle_gamma 90 _cell.entry_id 1RYE _cell.length_a 49.868 _cell.length_b 152.98 _cell.length_c 101.992 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 I N N ? 4 L N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 138 n n C1 C2 GOL sing 139 n n C1 H11 GOL sing 140 n n C1 H12 GOL sing 141 n n O1 HO1 GOL sing 142 n n C2 O2 GOL sing 143 n n C2 C3 GOL sing 144 n n C2 H2 GOL sing 145 n n O2 HO2 GOL sing 146 n n C3 O3 GOL sing 147 n n C3 H31 GOL sing 148 n n C3 H32 GOL sing 149 n n O3 HO3 GOL sing 150 n n # _atom_sites.entry_id 1RYE _atom_sites.fract_transf_matrix[1][1] 0.020053 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004872 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NDP A 1 500 500 NDP NDP . F 3 BME A 1 604 604 BME SEO . G 4 GOL A 1 603 603 GOL GOL . H 2 NDP B 1 501 501 NDP NDP . I 4 GOL B 1 601 601 GOL GOL . J 2 NDP C 1 502 502 NDP NDP . K 2 NDP D 1 503 503 NDP NDP . L 4 GOL D 1 602 602 GOL GOL . M 5 HOH A 1 605 4 HOH HOH . M 5 HOH A 2 606 7 HOH HOH . M 5 HOH A 3 607 10 HOH HOH . M 5 HOH A 4 608 16 HOH HOH . M 5 HOH A 5 609 17 HOH HOH . M 5 HOH A 6 610 25 HOH HOH . M 5 HOH A 7 611 26 HOH HOH . M 5 HOH A 8 612 28 HOH HOH . M 5 HOH A 9 613 34 HOH HOH . M 5 HOH A 10 614 36 HOH HOH . M 5 HOH A 11 615 37 HOH HOH . M 5 HOH A 12 616 39 HOH HOH . M 5 HOH A 13 617 50 HOH HOH . M 5 HOH A 14 618 52 HOH HOH . M 5 HOH A 15 619 56 HOH HOH . M 5 HOH A 16 620 57 HOH HOH . M 5 HOH A 17 621 60 HOH HOH . M 5 HOH A 18 622 63 HOH HOH . M 5 HOH A 19 623 65 HOH HOH . M 5 HOH A 20 624 76 HOH HOH . M 5 HOH A 21 625 77 HOH HOH . M 5 HOH A 22 626 80 HOH HOH . M 5 HOH A 23 627 86 HOH HOH . M 5 HOH A 24 628 91 HOH HOH . M 5 HOH A 25 629 93 HOH HOH . M 5 HOH A 26 630 98 HOH HOH . M 5 HOH A 27 631 99 HOH HOH . M 5 HOH A 28 632 100 HOH HOH . M 5 HOH A 29 633 104 HOH HOH . M 5 HOH A 30 634 108 HOH HOH . M 5 HOH A 31 635 109 HOH HOH . M 5 HOH A 32 636 110 HOH HOH . M 5 HOH A 33 637 112 HOH HOH . M 5 HOH A 34 638 118 HOH HOH . M 5 HOH A 35 639 119 HOH HOH . M 5 HOH A 36 640 121 HOH HOH . M 5 HOH A 37 641 129 HOH HOH . M 5 HOH A 38 642 133 HOH HOH . M 5 HOH A 39 643 136 HOH HOH . M 5 HOH A 40 644 140 HOH HOH . M 5 HOH A 41 645 141 HOH HOH . M 5 HOH A 42 646 142 HOH HOH . M 5 HOH A 43 647 143 HOH HOH . M 5 HOH A 44 648 144 HOH HOH . M 5 HOH A 45 649 147 HOH HOH . M 5 HOH A 46 650 159 HOH HOH . M 5 HOH A 47 651 160 HOH HOH . M 5 HOH A 48 652 165 HOH HOH . M 5 HOH A 49 653 169 HOH HOH . M 5 HOH A 50 654 171 HOH HOH . M 5 HOH A 51 655 174 HOH HOH . M 5 HOH A 52 656 181 HOH HOH . M 5 HOH A 53 657 182 HOH HOH . M 5 HOH A 54 658 184 HOH HOH . M 5 HOH A 55 659 185 HOH HOH . M 5 HOH A 56 660 187 HOH HOH . M 5 HOH A 57 661 188 HOH HOH . M 5 HOH A 58 662 189 HOH HOH . M 5 HOH A 59 663 190 HOH HOH . M 5 HOH A 60 664 194 HOH HOH . M 5 HOH A 61 665 199 HOH HOH . M 5 HOH A 62 666 202 HOH HOH . M 5 HOH A 63 667 205 HOH HOH . M 5 HOH A 64 668 207 HOH HOH . M 5 HOH A 65 669 210 HOH HOH . M 5 HOH A 66 670 220 HOH HOH . M 5 HOH A 67 671 221 HOH HOH . M 5 HOH A 68 672 225 HOH HOH . M 5 HOH A 69 673 226 HOH HOH . M 5 HOH A 70 674 227 HOH HOH . M 5 HOH A 71 675 239 HOH HOH . M 5 HOH A 72 676 243 HOH HOH . M 5 HOH A 73 677 252 HOH HOH . M 5 HOH A 74 678 253 HOH HOH . M 5 HOH A 75 679 254 HOH HOH . M 5 HOH A 76 680 255 HOH HOH . M 5 HOH A 77 681 259 HOH HOH . M 5 HOH A 78 682 261 HOH HOH . M 5 HOH A 79 683 262 HOH HOH . M 5 HOH A 80 684 263 HOH HOH . M 5 HOH A 81 685 270 HOH HOH . M 5 HOH A 82 686 271 HOH HOH . M 5 HOH A 83 687 274 HOH HOH . M 5 HOH A 84 688 276 HOH HOH . M 5 HOH A 85 689 285 HOH HOH . N 5 HOH B 1 602 8 HOH HOH . N 5 HOH B 2 603 9 HOH HOH . N 5 HOH B 3 604 11 HOH HOH . N 5 HOH B 4 605 12 HOH HOH . N 5 HOH B 5 606 23 HOH HOH . N 5 HOH B 6 607 27 HOH HOH . N 5 HOH B 7 608 32 HOH HOH . N 5 HOH B 8 609 42 HOH HOH . N 5 HOH B 9 610 43 HOH HOH . N 5 HOH B 10 611 46 HOH HOH . N 5 HOH B 11 612 48 HOH HOH . N 5 HOH B 12 613 49 HOH HOH . N 5 HOH B 13 614 51 HOH HOH . N 5 HOH B 14 615 59 HOH HOH . N 5 HOH B 15 616 62 HOH HOH . N 5 HOH B 16 617 67 HOH HOH . N 5 HOH B 17 618 68 HOH HOH . N 5 HOH B 18 619 72 HOH HOH . N 5 HOH B 19 620 75 HOH HOH . N 5 HOH B 20 621 84 HOH HOH . N 5 HOH B 21 622 92 HOH HOH . N 5 HOH B 22 623 96 HOH HOH . N 5 HOH B 23 624 107 HOH HOH . N 5 HOH B 24 625 111 HOH HOH . N 5 HOH B 25 626 117 HOH HOH . N 5 HOH B 26 627 120 HOH HOH . N 5 HOH B 27 628 122 HOH HOH . N 5 HOH B 28 629 125 HOH HOH . N 5 HOH B 29 630 130 HOH HOH . N 5 HOH B 30 631 134 HOH HOH . N 5 HOH B 31 632 145 HOH HOH . N 5 HOH B 32 633 146 HOH HOH . N 5 HOH B 33 634 148 HOH HOH . N 5 HOH B 34 635 167 HOH HOH . N 5 HOH B 35 636 168 HOH HOH . N 5 HOH B 36 637 178 HOH HOH . N 5 HOH B 37 638 201 HOH HOH . N 5 HOH B 38 639 203 HOH HOH . N 5 HOH B 39 640 208 HOH HOH . N 5 HOH B 40 641 209 HOH HOH . N 5 HOH B 41 642 214 HOH HOH . N 5 HOH B 42 643 222 HOH HOH . N 5 HOH B 43 644 223 HOH HOH . N 5 HOH B 44 645 224 HOH HOH . N 5 HOH B 45 646 229 HOH HOH . N 5 HOH B 46 647 232 HOH HOH . N 5 HOH B 47 648 233 HOH HOH . N 5 HOH B 48 649 235 HOH HOH . N 5 HOH B 49 650 242 HOH HOH . N 5 HOH B 50 651 248 HOH HOH . N 5 HOH B 51 652 256 HOH HOH . N 5 HOH B 52 653 257 HOH HOH . N 5 HOH B 53 654 258 HOH HOH . N 5 HOH B 54 655 260 HOH HOH . N 5 HOH B 55 656 269 HOH HOH . N 5 HOH B 56 657 280 HOH HOH . N 5 HOH B 57 658 281 HOH HOH . N 5 HOH B 58 659 282 HOH HOH . N 5 HOH B 59 660 283 HOH HOH . N 5 HOH B 60 661 284 HOH HOH . O 5 HOH C 1 503 2 HOH HOH . O 5 HOH C 2 504 15 HOH HOH . O 5 HOH C 3 505 24 HOH HOH . O 5 HOH C 4 506 31 HOH HOH . O 5 HOH C 5 507 33 HOH HOH . O 5 HOH C 6 508 35 HOH HOH . O 5 HOH C 7 509 45 HOH HOH . O 5 HOH C 8 510 47 HOH HOH . O 5 HOH C 9 511 61 HOH HOH . O 5 HOH C 10 512 69 HOH HOH . O 5 HOH C 11 513 74 HOH HOH . O 5 HOH C 12 514 79 HOH HOH . O 5 HOH C 13 515 95 HOH HOH . O 5 HOH C 14 516 97 HOH HOH . O 5 HOH C 15 517 101 HOH HOH . O 5 HOH C 16 518 102 HOH HOH . O 5 HOH C 17 519 124 HOH HOH . O 5 HOH C 18 520 127 HOH HOH . O 5 HOH C 19 521 131 HOH HOH . O 5 HOH C 20 522 132 HOH HOH . O 5 HOH C 21 523 139 HOH HOH . O 5 HOH C 22 524 149 HOH HOH . O 5 HOH C 23 525 150 HOH HOH . O 5 HOH C 24 526 172 HOH HOH . O 5 HOH C 25 527 173 HOH HOH . O 5 HOH C 26 528 176 HOH HOH . O 5 HOH C 27 529 179 HOH HOH . O 5 HOH C 28 530 183 HOH HOH . O 5 HOH C 29 531 192 HOH HOH . O 5 HOH C 30 532 195 HOH HOH . O 5 HOH C 31 533 198 HOH HOH . O 5 HOH C 32 534 200 HOH HOH . O 5 HOH C 33 535 206 HOH HOH . O 5 HOH C 34 536 211 HOH HOH . O 5 HOH C 35 537 213 HOH HOH . O 5 HOH C 36 538 215 HOH HOH . O 5 HOH C 37 539 216 HOH HOH . O 5 HOH C 38 540 219 HOH HOH . O 5 HOH C 39 541 234 HOH HOH . O 5 HOH C 40 542 236 HOH HOH . O 5 HOH C 41 543 237 HOH HOH . O 5 HOH C 42 544 247 HOH HOH . O 5 HOH C 43 545 249 HOH HOH . O 5 HOH C 44 546 250 HOH HOH . O 5 HOH C 45 547 264 HOH HOH . O 5 HOH C 46 548 268 HOH HOH . O 5 HOH C 47 549 275 HOH HOH . P 5 HOH D 1 603 1 HOH HOH . P 5 HOH D 2 604 3 HOH HOH . P 5 HOH D 3 605 5 HOH HOH . P 5 HOH D 4 606 6 HOH HOH . P 5 HOH D 5 607 13 HOH HOH . P 5 HOH D 6 608 14 HOH HOH . P 5 HOH D 7 609 18 HOH HOH . P 5 HOH D 8 610 19 HOH HOH . P 5 HOH D 9 611 20 HOH HOH . P 5 HOH D 10 612 21 HOH HOH . P 5 HOH D 11 613 22 HOH HOH . P 5 HOH D 12 614 29 HOH HOH . P 5 HOH D 13 615 30 HOH HOH . P 5 HOH D 14 616 38 HOH HOH . P 5 HOH D 15 617 40 HOH HOH . P 5 HOH D 16 618 41 HOH HOH . P 5 HOH D 17 619 44 HOH HOH . P 5 HOH D 18 620 53 HOH HOH . P 5 HOH D 19 621 54 HOH HOH . P 5 HOH D 20 622 55 HOH HOH . P 5 HOH D 21 623 58 HOH HOH . P 5 HOH D 22 624 64 HOH HOH . P 5 HOH D 23 625 66 HOH HOH . P 5 HOH D 24 626 70 HOH HOH . P 5 HOH D 25 627 71 HOH HOH . P 5 HOH D 26 628 73 HOH HOH . P 5 HOH D 27 629 78 HOH HOH . P 5 HOH D 28 630 81 HOH HOH . P 5 HOH D 29 631 82 HOH HOH . P 5 HOH D 30 632 83 HOH HOH . P 5 HOH D 31 633 85 HOH HOH . P 5 HOH D 32 634 87 HOH HOH . P 5 HOH D 33 635 88 HOH HOH . P 5 HOH D 34 636 89 HOH HOH . P 5 HOH D 35 637 90 HOH HOH . P 5 HOH D 36 638 94 HOH HOH . P 5 HOH D 37 639 103 HOH HOH . P 5 HOH D 38 640 105 HOH HOH . P 5 HOH D 39 641 106 HOH HOH . P 5 HOH D 40 642 113 HOH HOH . P 5 HOH D 41 643 114 HOH HOH . P 5 HOH D 42 644 115 HOH HOH . P 5 HOH D 43 645 116 HOH HOH . P 5 HOH D 44 646 123 HOH HOH . P 5 HOH D 45 647 126 HOH HOH . P 5 HOH D 46 648 128 HOH HOH . P 5 HOH D 47 649 135 HOH HOH . P 5 HOH D 48 650 137 HOH HOH . P 5 HOH D 49 651 138 HOH HOH . P 5 HOH D 50 652 151 HOH HOH . P 5 HOH D 51 653 152 HOH HOH . P 5 HOH D 52 654 153 HOH HOH . P 5 HOH D 53 655 154 HOH HOH . P 5 HOH D 54 656 155 HOH HOH . P 5 HOH D 55 657 156 HOH HOH . P 5 HOH D 56 658 157 HOH HOH . P 5 HOH D 57 659 158 HOH HOH . P 5 HOH D 58 660 161 HOH HOH . P 5 HOH D 59 661 162 HOH HOH . P 5 HOH D 60 662 163 HOH HOH . P 5 HOH D 61 663 164 HOH HOH . P 5 HOH D 62 664 166 HOH HOH . P 5 HOH D 63 665 170 HOH HOH . P 5 HOH D 64 666 175 HOH HOH . P 5 HOH D 65 667 177 HOH HOH . P 5 HOH D 66 668 180 HOH HOH . P 5 HOH D 67 669 186 HOH HOH . P 5 HOH D 68 670 191 HOH HOH . P 5 HOH D 69 671 193 HOH HOH . P 5 HOH D 70 672 196 HOH HOH . P 5 HOH D 71 673 197 HOH HOH . P 5 HOH D 72 674 204 HOH HOH . P 5 HOH D 73 675 212 HOH HOH . P 5 HOH D 74 676 217 HOH HOH . P 5 HOH D 75 677 218 HOH HOH . P 5 HOH D 76 678 228 HOH HOH . P 5 HOH D 77 679 230 HOH HOH . P 5 HOH D 78 680 231 HOH HOH . P 5 HOH D 79 681 238 HOH HOH . P 5 HOH D 80 682 240 HOH HOH . P 5 HOH D 81 683 241 HOH HOH . P 5 HOH D 82 684 244 HOH HOH . P 5 HOH D 83 685 245 HOH HOH . P 5 HOH D 84 686 246 HOH HOH . P 5 HOH D 85 687 251 HOH HOH . P 5 HOH D 86 688 265 HOH HOH . P 5 HOH D 87 689 266 HOH HOH . P 5 HOH D 88 690 267 HOH HOH . P 5 HOH D 89 691 272 HOH HOH . P 5 HOH D 90 692 273 HOH HOH . P 5 HOH D 91 693 277 HOH HOH . P 5 HOH D 92 694 278 HOH HOH . P 5 HOH D 93 695 279 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 4 22.514 54.186 8.93 1 54.45 ? C1 GOL 601 B 1 HETATM 2 O O1 GOL . . . I 4 22.674 54.958 10.115 1 53.12 ? O1 GOL 601 B 1 HETATM 3 C C2 GOL . . . I 4 23.678 54.398 7.954 1 51.62 ? C2 GOL 601 B 1 HETATM 4 O O2 GOL . . . I 4 24.89 53.803 8.454 1 51.89 ? O2 GOL 601 B 1 HETATM 5 C C3 GOL . . . I 4 23.277 53.81 6.598 1 51.66 ? C3 GOL 601 B 1 HETATM 6 O O3 GOL . . . I 4 24.148 54.226 5.557 1 49.39 ? O3 GOL 601 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #