data_1RYT
#
_model_server_result.job_id            Xy9MJZjkhzenuHe6EZ2waQ 
_model_server_result.datetime_utc      '2025-03-06 08:40:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1ryt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    1RYT 
#
_exptl.entry_id    1RYT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (III) ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RYT 
_cell.length_a            50.4 
_cell.length_b            82 
_cell.length_c            100.7 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RYT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA,PQS tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E 1 1,2 
A,B,C,D,E 2 1,3,2,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 19 A GLU 20 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? 
metalc ? metalc2 A OE2 GLU 19 A GLU 20 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.506 ? 
metalc ? metalc3 A OE2 GLU 52 A GLU 53 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? 
metalc ? metalc4 A OE1 GLU 52 A GLU 53 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc5 A OE1 GLU 93 A GLU 94 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? 
metalc ? metalc6 A OE2 GLU 93 A GLU 94 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc7 A OE1 GLU 96 A GLU 97 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc8 A OE1 GLU 127 A GLU 128 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc9 A OE2 GLU 127 A GLU 128 1_555 C FE FE . A FE 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
metalc ? metalc10 A ND1 HIS 130 A HIS 131 1_555 B FE FE . A FE 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc11 A SG CYS 157 A CYS 158 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc12 A SG CYS 160 A CYS 161 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc13 A SG CYS 173 A CYS 174 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc14 A SG CYS 176 A CYS 177 1_555 D FE FE . A FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc15 B FE FE . A FE 600 1_555 E O HOH . A HOH 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc16 C FE FE . A FE 601 1_555 E O HOH . A HOH 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
#
_chem_comp.formula           'Fe 3' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (III) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1RYT 
_atom_sites.fract_transf_matrix[1][1]    0.019841 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012195 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00993 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 600 600 FE FE . 
C 2 FE A 1 601 601 FE FE . 
D 2 FE A 1 401 401 FE FE . 
E 3 HOH A 1 602 602 HOH HOH . 
E 3 HOH A 2 604 604 HOH HOH . 
E 3 HOH A 3 606 606 HOH HOH . 
E 3 HOH A 4 609 609 HOH HOH . 
E 3 HOH A 5 610 610 HOH HOH . 
E 3 HOH A 6 611 611 HOH HOH . 
E 3 HOH A 7 613 613 HOH HOH . 
E 3 HOH A 8 614 614 HOH HOH . 
E 3 HOH A 9 617 617 HOH HOH . 
E 3 HOH A 10 618 618 HOH HOH . 
E 3 HOH A 11 621 621 HOH HOH . 
E 3 HOH A 12 623 623 HOH HOH . 
E 3 HOH A 13 624 624 HOH HOH . 
E 3 HOH A 14 625 625 HOH HOH . 
E 3 HOH A 15 628 628 HOH HOH . 
E 3 HOH A 16 629 629 HOH HOH . 
E 3 HOH A 17 631 631 HOH HOH . 
E 3 HOH A 18 635 635 HOH HOH . 
E 3 HOH A 19 636 636 HOH HOH . 
E 3 HOH A 20 639 639 HOH HOH . 
E 3 HOH A 21 640 640 HOH HOH . 
E 3 HOH A 22 641 641 HOH HOH . 
E 3 HOH A 23 644 644 HOH HOH . 
E 3 HOH A 24 646 646 HOH HOH . 
E 3 HOH A 25 647 647 HOH HOH . 
E 3 HOH A 26 650 650 HOH HOH . 
E 3 HOH A 27 654 654 HOH HOH . 
E 3 HOH A 28 655 655 HOH HOH . 
E 3 HOH A 29 658 658 HOH HOH . 
E 3 HOH A 30 661 661 HOH HOH . 
E 3 HOH A 31 663 663 HOH HOH . 
E 3 HOH A 32 664 664 HOH HOH . 
E 3 HOH A 33 665 665 HOH HOH . 
E 3 HOH A 34 666 666 HOH HOH . 
E 3 HOH A 35 667 667 HOH HOH . 
E 3 HOH A 36 668 668 HOH HOH . 
E 3 HOH A 37 669 669 HOH HOH . 
E 3 HOH A 38 670 670 HOH HOH . 
E 3 HOH A 39 671 671 HOH HOH . 
E 3 HOH A 40 672 672 HOH HOH . 
E 3 HOH A 41 673 673 HOH HOH . 
E 3 HOH A 42 674 674 HOH HOH . 
E 3 HOH A 43 675 675 HOH HOH . 
E 3 HOH A 44 676 676 HOH HOH . 
E 3 HOH A 45 677 677 HOH HOH . 
E 3 HOH A 46 678 678 HOH HOH . 
E 3 HOH A 47 679 679 HOH HOH . 
E 3 HOH A 48 680 680 HOH HOH . 
E 3 HOH A 49 681 681 HOH HOH . 
E 3 HOH A 50 682 682 HOH HOH . 
E 3 HOH A 51 683 683 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               11.47 
_atom_site.Cartn_y               -10.72 
_atom_site.Cartn_z               13.033 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        17.77 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#