data_1RZ7 # _model_server_result.job_id 2LYKIvOPXlSMGrETd2n4rQ _model_server_result.datetime_utc '2024-11-24 06:09:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rz7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":214}' # _entry.id 1RZ7 # _exptl.entry_id 1RZ7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RZ7 _cell.length_a 63.485 _cell.length_b 72.951 _cell.length_c 101.921 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RZ7 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 133 L CYS 134 1_555 A SG CYS 193 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 146 H CYS 140 1_555 B SG CYS 202 H CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1RZ7 _atom_sites.fract_transf_matrix[1][1] 0.015752 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013708 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL L 1 214 2 GOL GOL . D 3 GOL H 1 214 1 GOL GOL . E 4 HOH L 1 1001 1001 HOH HOH . E 4 HOH L 2 1002 1002 HOH HOH . E 4 HOH L 3 1003 1003 HOH HOH . E 4 HOH L 4 1005 1005 HOH HOH . E 4 HOH L 5 1007 1007 HOH HOH . E 4 HOH L 6 1009 1009 HOH HOH . E 4 HOH L 7 1010 1010 HOH HOH . E 4 HOH L 8 1011 1011 HOH HOH . E 4 HOH L 9 1013 1013 HOH HOH . E 4 HOH L 10 1014 1014 HOH HOH . E 4 HOH L 11 1015 1015 HOH HOH . E 4 HOH L 12 1016 1016 HOH HOH . E 4 HOH L 13 1021 1021 HOH HOH . E 4 HOH L 14 1022 1022 HOH HOH . E 4 HOH L 15 1024 1024 HOH HOH . E 4 HOH L 16 1026 1026 HOH HOH . E 4 HOH L 17 1034 1034 HOH HOH . E 4 HOH L 18 1038 1038 HOH HOH . E 4 HOH L 19 1039 1039 HOH HOH . E 4 HOH L 20 1040 1040 HOH HOH . E 4 HOH L 21 1043 1043 HOH HOH . E 4 HOH L 22 1044 1044 HOH HOH . E 4 HOH L 23 1046 1046 HOH HOH . E 4 HOH L 24 1047 1047 HOH HOH . E 4 HOH L 25 1048 1048 HOH HOH . E 4 HOH L 26 1052 1052 HOH HOH . E 4 HOH L 27 1054 1054 HOH HOH . E 4 HOH L 28 1055 1055 HOH HOH . E 4 HOH L 29 1056 1056 HOH HOH . E 4 HOH L 30 1058 1058 HOH HOH . E 4 HOH L 31 1059 1059 HOH HOH . E 4 HOH L 32 1060 1060 HOH HOH . E 4 HOH L 33 1061 1061 HOH HOH . E 4 HOH L 34 1065 1065 HOH HOH . E 4 HOH L 35 1066 1066 HOH HOH . E 4 HOH L 36 1067 1067 HOH HOH . E 4 HOH L 37 1068 1068 HOH HOH . E 4 HOH L 38 1069 1069 HOH HOH . E 4 HOH L 39 1070 1070 HOH HOH . E 4 HOH L 40 1074 1074 HOH HOH . E 4 HOH L 41 1075 1075 HOH HOH . E 4 HOH L 42 1077 1077 HOH HOH . E 4 HOH L 43 1078 1078 HOH HOH . E 4 HOH L 44 1079 1079 HOH HOH . E 4 HOH L 45 1080 1080 HOH HOH . E 4 HOH L 46 1085 1085 HOH HOH . E 4 HOH L 47 1088 1088 HOH HOH . E 4 HOH L 48 1091 1091 HOH HOH . E 4 HOH L 49 1093 1093 HOH HOH . E 4 HOH L 50 1094 1094 HOH HOH . E 4 HOH L 51 1095 1095 HOH HOH . E 4 HOH L 52 1096 1096 HOH HOH . E 4 HOH L 53 1097 1097 HOH HOH . E 4 HOH L 54 1100 1100 HOH HOH . E 4 HOH L 55 1103 1103 HOH HOH . E 4 HOH L 56 1106 1106 HOH HOH . E 4 HOH L 57 1107 1107 HOH HOH . E 4 HOH L 58 1110 1110 HOH HOH . E 4 HOH L 59 1111 1111 HOH HOH . E 4 HOH L 60 1114 1114 HOH HOH . E 4 HOH L 61 1115 1115 HOH HOH . E 4 HOH L 62 1117 1117 HOH HOH . E 4 HOH L 63 1119 1119 HOH HOH . E 4 HOH L 64 1121 1121 HOH HOH . E 4 HOH L 65 1122 1122 HOH HOH . E 4 HOH L 66 1126 1126 HOH HOH . E 4 HOH L 67 1127 1127 HOH HOH . E 4 HOH L 68 1130 1130 HOH HOH . E 4 HOH L 69 1131 1131 HOH HOH . E 4 HOH L 70 1132 1132 HOH HOH . E 4 HOH L 71 1133 1133 HOH HOH . E 4 HOH L 72 1134 1134 HOH HOH . E 4 HOH L 73 1136 1136 HOH HOH . E 4 HOH L 74 1137 1137 HOH HOH . E 4 HOH L 75 1139 1139 HOH HOH . E 4 HOH L 76 1141 1141 HOH HOH . E 4 HOH L 77 1143 1143 HOH HOH . E 4 HOH L 78 1146 1146 HOH HOH . E 4 HOH L 79 1148 1148 HOH HOH . E 4 HOH L 80 1153 1153 HOH HOH . E 4 HOH L 81 1154 1154 HOH HOH . E 4 HOH L 82 1155 1155 HOH HOH . E 4 HOH L 83 1156 1156 HOH HOH . E 4 HOH L 84 1157 1157 HOH HOH . E 4 HOH L 85 1158 1158 HOH HOH . E 4 HOH L 86 1159 1159 HOH HOH . E 4 HOH L 87 1160 1160 HOH HOH . E 4 HOH L 88 1161 1161 HOH HOH . E 4 HOH L 89 1163 1163 HOH HOH . E 4 HOH L 90 1164 1164 HOH HOH . E 4 HOH L 91 1169 1169 HOH HOH . E 4 HOH L 92 1173 1173 HOH HOH . E 4 HOH L 93 1174 1174 HOH HOH . E 4 HOH L 94 1176 1176 HOH HOH . E 4 HOH L 95 1181 1181 HOH HOH . E 4 HOH L 96 1182 1182 HOH HOH . E 4 HOH L 97 1183 1183 HOH HOH . E 4 HOH L 98 1184 1184 HOH HOH . E 4 HOH L 99 1185 1185 HOH HOH . E 4 HOH L 100 1187 1187 HOH HOH . E 4 HOH L 101 1191 1191 HOH HOH . E 4 HOH L 102 1194 1194 HOH HOH . E 4 HOH L 103 1195 1195 HOH HOH . E 4 HOH L 104 1196 1196 HOH HOH . E 4 HOH L 105 1197 1197 HOH HOH . E 4 HOH L 106 1198 1198 HOH HOH . E 4 HOH L 107 1199 1199 HOH HOH . E 4 HOH L 108 1201 1201 HOH HOH . E 4 HOH L 109 1202 1202 HOH HOH . E 4 HOH L 110 1203 1203 HOH HOH . E 4 HOH L 111 1204 1204 HOH HOH . E 4 HOH L 112 1207 1207 HOH HOH . E 4 HOH L 113 1208 1208 HOH HOH . E 4 HOH L 114 1212 1212 HOH HOH . E 4 HOH L 115 1214 1214 HOH HOH . E 4 HOH L 116 1215 1215 HOH HOH . E 4 HOH L 117 1216 1216 HOH HOH . E 4 HOH L 118 1222 1222 HOH HOH . E 4 HOH L 119 1223 1223 HOH HOH . E 4 HOH L 120 1225 1225 HOH HOH . E 4 HOH L 121 1227 1227 HOH HOH . E 4 HOH L 122 1229 1229 HOH HOH . E 4 HOH L 123 1231 1231 HOH HOH . E 4 HOH L 124 1236 1236 HOH HOH . E 4 HOH L 125 1237 1237 HOH HOH . E 4 HOH L 126 1238 1238 HOH HOH . E 4 HOH L 127 1239 1239 HOH HOH . E 4 HOH L 128 1240 1240 HOH HOH . F 4 HOH H 1 1004 1004 HOH HOH . F 4 HOH H 2 1006 1006 HOH HOH . F 4 HOH H 3 1008 1008 HOH HOH . F 4 HOH H 4 1012 1012 HOH HOH . F 4 HOH H 5 1017 1017 HOH HOH . F 4 HOH H 6 1018 1018 HOH HOH . F 4 HOH H 7 1019 1019 HOH HOH . F 4 HOH H 8 1020 1020 HOH HOH . F 4 HOH H 9 1023 1023 HOH HOH . F 4 HOH H 10 1025 1025 HOH HOH . F 4 HOH H 11 1027 1027 HOH HOH . F 4 HOH H 12 1028 1028 HOH HOH . F 4 HOH H 13 1029 1029 HOH HOH . F 4 HOH H 14 1030 1030 HOH HOH . F 4 HOH H 15 1031 1031 HOH HOH . F 4 HOH H 16 1032 1032 HOH HOH . F 4 HOH H 17 1033 1033 HOH HOH . F 4 HOH H 18 1035 1035 HOH HOH . F 4 HOH H 19 1036 1036 HOH HOH . F 4 HOH H 20 1037 1037 HOH HOH . F 4 HOH H 21 1041 1041 HOH HOH . F 4 HOH H 22 1042 1042 HOH HOH . F 4 HOH H 23 1045 1045 HOH HOH . F 4 HOH H 24 1049 1049 HOH HOH . F 4 HOH H 25 1050 1050 HOH HOH . F 4 HOH H 26 1051 1051 HOH HOH . F 4 HOH H 27 1053 1053 HOH HOH . F 4 HOH H 28 1057 1057 HOH HOH . F 4 HOH H 29 1062 1062 HOH HOH . F 4 HOH H 30 1063 1063 HOH HOH . F 4 HOH H 31 1064 1064 HOH HOH . F 4 HOH H 32 1071 1071 HOH HOH . F 4 HOH H 33 1072 1072 HOH HOH . F 4 HOH H 34 1073 1073 HOH HOH . F 4 HOH H 35 1076 1076 HOH HOH . F 4 HOH H 36 1081 1081 HOH HOH . F 4 HOH H 37 1082 1082 HOH HOH . F 4 HOH H 38 1083 1083 HOH HOH . F 4 HOH H 39 1084 1084 HOH HOH . F 4 HOH H 40 1086 1086 HOH HOH . F 4 HOH H 41 1087 1087 HOH HOH . F 4 HOH H 42 1089 1089 HOH HOH . F 4 HOH H 43 1090 1090 HOH HOH . F 4 HOH H 44 1092 1092 HOH HOH . F 4 HOH H 45 1098 1098 HOH HOH . F 4 HOH H 46 1099 1099 HOH HOH . F 4 HOH H 47 1101 1101 HOH HOH . F 4 HOH H 48 1102 1102 HOH HOH . F 4 HOH H 49 1104 1104 HOH HOH . F 4 HOH H 50 1105 1105 HOH HOH . F 4 HOH H 51 1108 1108 HOH HOH . F 4 HOH H 52 1109 1109 HOH HOH . F 4 HOH H 53 1112 1112 HOH HOH . F 4 HOH H 54 1113 1113 HOH HOH . F 4 HOH H 55 1116 1116 HOH HOH . F 4 HOH H 56 1118 1118 HOH HOH . F 4 HOH H 57 1120 1120 HOH HOH . F 4 HOH H 58 1123 1123 HOH HOH . F 4 HOH H 59 1124 1124 HOH HOH . F 4 HOH H 60 1125 1125 HOH HOH . F 4 HOH H 61 1128 1128 HOH HOH . F 4 HOH H 62 1129 1129 HOH HOH . F 4 HOH H 63 1135 1135 HOH HOH . F 4 HOH H 64 1138 1138 HOH HOH . F 4 HOH H 65 1140 1140 HOH HOH . F 4 HOH H 66 1142 1142 HOH HOH . F 4 HOH H 67 1144 1144 HOH HOH . F 4 HOH H 68 1145 1145 HOH HOH . F 4 HOH H 69 1147 1147 HOH HOH . F 4 HOH H 70 1149 1149 HOH HOH . F 4 HOH H 71 1150 1150 HOH HOH . F 4 HOH H 72 1151 1151 HOH HOH . F 4 HOH H 73 1152 1152 HOH HOH . F 4 HOH H 74 1162 1162 HOH HOH . F 4 HOH H 75 1165 1165 HOH HOH . F 4 HOH H 76 1166 1166 HOH HOH . F 4 HOH H 77 1167 1167 HOH HOH . F 4 HOH H 78 1168 1168 HOH HOH . F 4 HOH H 79 1170 1170 HOH HOH . F 4 HOH H 80 1171 1171 HOH HOH . F 4 HOH H 81 1172 1172 HOH HOH . F 4 HOH H 82 1175 1175 HOH HOH . F 4 HOH H 83 1177 1177 HOH HOH . F 4 HOH H 84 1178 1178 HOH HOH . F 4 HOH H 85 1179 1179 HOH HOH . F 4 HOH H 86 1180 1180 HOH HOH . F 4 HOH H 87 1186 1186 HOH HOH . F 4 HOH H 88 1188 1188 HOH HOH . F 4 HOH H 89 1189 1189 HOH HOH . F 4 HOH H 90 1190 1190 HOH HOH . F 4 HOH H 91 1192 1192 HOH HOH . F 4 HOH H 92 1193 1193 HOH HOH . F 4 HOH H 93 1200 1200 HOH HOH . F 4 HOH H 94 1205 1205 HOH HOH . F 4 HOH H 95 1206 1206 HOH HOH . F 4 HOH H 96 1209 1209 HOH HOH . F 4 HOH H 97 1210 1210 HOH HOH . F 4 HOH H 98 1211 1211 HOH HOH . F 4 HOH H 99 1213 1213 HOH HOH . F 4 HOH H 100 1217 1217 HOH HOH . F 4 HOH H 101 1218 1218 HOH HOH . F 4 HOH H 102 1219 1219 HOH HOH . F 4 HOH H 103 1220 1220 HOH HOH . F 4 HOH H 104 1221 1221 HOH HOH . F 4 HOH H 105 1224 1224 HOH HOH . F 4 HOH H 106 1226 1226 HOH HOH . F 4 HOH H 107 1228 1228 HOH HOH . F 4 HOH H 108 1230 1230 HOH HOH . F 4 HOH H 109 1232 1232 HOH HOH . F 4 HOH H 110 1233 1233 HOH HOH . F 4 HOH H 111 1234 1234 HOH HOH . F 4 HOH H 112 1235 1235 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 18.698 11.447 6.074 1 21.96 ? C1 GOL 214 H 1 HETATM 2 O O1 GOL . . . D 3 19.39 10.27 5.679 1 21.7 ? O1 GOL 214 H 1 HETATM 3 C C2 GOL . . . D 3 17.878 11.951 4.882 1 24.39 ? C2 GOL 214 H 1 HETATM 4 O O2 GOL . . . D 3 18.769 12.269 3.827 1 29.21 ? O2 GOL 214 H 1 HETATM 5 C C3 GOL . . . D 3 17.062 13.224 5.178 1 23.38 ? C3 GOL 214 H 1 HETATM 6 O O3 GOL . . . D 3 17.907 14.33 5.519 1 20.76 ? O3 GOL 214 H 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #