data_1RZM
#
_model_server_result.job_id            ou35rxwasSaAdMHfIk8rFg 
_model_server_result.datetime_utc      '2024-11-15 22:22:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rzm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":8002}' 
#
_entry.id    1RZM 
#
_exptl.entry_id    1RZM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              168.042 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PHOSPHOENOLPYRUVATE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1RZM 
_cell.length_a            71.581 
_cell.length_b            144.215 
_cell.length_c            141.057 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RZM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 71.581 0 70.5285 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 102 A CYS 102 1_555 C CD CD . A CD 8001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.686 ? 
metalc ? metalc2 A NE2 HIS 115 A HIS 115 5_545 G CD CD . B CD 9009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc3 A OE1 GLU 119 A GLU 119 5_545 G CD CD . B CD 9009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? 
metalc ? metalc4 A OE2 GLU 119 A GLU 119 5_545 G CD CD . B CD 9009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc5 A NE2 HIS 272 A HIS 272 1_555 C CD CD . A CD 8001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc6 A OE1 GLU 298 A GLU 298 1_555 C CD CD . A CD 8001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? 
metalc ? metalc7 A OE2 GLU 298 A GLU 298 1_555 C CD CD . A CD 8001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc8 A OD2 ASP 309 A ASP 309 1_555 C CD CD . A CD 8001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc9 B SG CYS 102 B CYS 102 1_555 F CD CD . B CD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? 
metalc ? metalc10 B NE2 HIS 115 B HIS 115 1_555 G CD CD . B CD 9009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc11 B OE2 GLU 119 B GLU 119 1_555 G CD CD . B CD 9009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc12 B OE1 GLU 119 B GLU 119 1_555 G CD CD . B CD 9009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc13 B NE2 HIS 272 B HIS 272 1_555 F CD CD . B CD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc14 B OE1 GLU 298 B GLU 298 1_555 F CD CD . B CD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.001 ? 
metalc ? metalc15 B OE2 GLU 298 B GLU 298 1_555 F CD CD . B CD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc16 B OD2 ASP 309 B ASP 309 1_555 F CD CD . B CD 9001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc17 F CD CD . B CD 9001 1_555 I O1 E4P . B E4P 9003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? 
#
_chem_comp.formula           'C3 H5 O6 P' 
_chem_comp.formula_weight    168.042 
_chem_comp.id                PEP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PHOSPHOENOLPYRUVATE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 PEP doub 257 n n 
C1 O2' PEP sing 258 n n 
C1 C2 PEP sing 259 n n 
O2' HO2 PEP sing 260 n n 
C2 C3 PEP doub 261 n n 
C2 O2 PEP sing 262 n n 
C3 H31 PEP sing 263 n n 
C3 H32 PEP sing 264 n n 
O2 P PEP sing 265 n n 
P O1P PEP doub 266 n n 
P O2P PEP sing 267 n n 
P O3P PEP sing 268 n n 
O2P HOP2 PEP sing 269 n n 
O3P HOP3 PEP sing 270 n n 
#
_atom_sites.entry_id                     1RZM 
_atom_sites.fract_transf_matrix[1][1]    0.01397 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006934 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CD A 1 8001 8001 CD CD . 
D 3 PEP A 1 8002 8002 PEP PEP . 
E 4 E4P A 1 8003 8003 E4P E4P . 
F 2 CD B 1 9001 9001 CD CD . 
G 2 CD B 1 9009 9009 CD CD . 
H 3 PEP B 1 9002 9002 PEP PEP . 
I 4 E4P B 1 9003 9003 E4P E4P . 
J 5 HOH A 1 8004 3 HOH HOH . 
J 5 HOH A 2 8005 4 HOH HOH . 
J 5 HOH A 3 8006 5 HOH HOH . 
J 5 HOH A 4 8007 7 HOH HOH . 
J 5 HOH A 5 8008 8 HOH HOH . 
J 5 HOH A 6 8009 9 HOH HOH . 
J 5 HOH A 7 8010 10 HOH HOH . 
J 5 HOH A 8 8011 11 HOH HOH . 
J 5 HOH A 9 8012 18 HOH HOH . 
J 5 HOH A 10 8013 19 HOH HOH . 
J 5 HOH A 11 8014 20 HOH HOH . 
J 5 HOH A 12 8015 24 HOH HOH . 
J 5 HOH A 13 8016 25 HOH HOH . 
J 5 HOH A 14 8017 30 HOH HOH . 
J 5 HOH A 15 8018 31 HOH HOH . 
J 5 HOH A 16 8019 32 HOH HOH . 
J 5 HOH A 17 8020 33 HOH HOH . 
J 5 HOH A 18 8021 35 HOH HOH . 
J 5 HOH A 19 8022 38 HOH HOH . 
J 5 HOH A 20 8023 39 HOH HOH . 
J 5 HOH A 21 8024 40 HOH HOH . 
J 5 HOH A 22 8025 42 HOH HOH . 
J 5 HOH A 23 8026 43 HOH HOH . 
J 5 HOH A 24 8027 44 HOH HOH . 
J 5 HOH A 25 8028 45 HOH HOH . 
J 5 HOH A 26 8029 46 HOH HOH . 
J 5 HOH A 27 8030 47 HOH HOH . 
J 5 HOH A 28 8031 48 HOH HOH . 
J 5 HOH A 29 8032 49 HOH HOH . 
J 5 HOH A 30 8033 51 HOH HOH . 
J 5 HOH A 31 8034 58 HOH HOH . 
J 5 HOH A 32 8035 59 HOH HOH . 
J 5 HOH A 33 8036 60 HOH HOH . 
J 5 HOH A 34 8037 61 HOH HOH . 
J 5 HOH A 35 8038 64 HOH HOH . 
J 5 HOH A 36 8039 65 HOH HOH . 
J 5 HOH A 37 8040 66 HOH HOH . 
J 5 HOH A 38 8041 68 HOH HOH . 
J 5 HOH A 39 8042 70 HOH HOH . 
J 5 HOH A 40 8043 71 HOH HOH . 
J 5 HOH A 41 8044 72 HOH HOH . 
J 5 HOH A 42 8045 74 HOH HOH . 
J 5 HOH A 43 8046 75 HOH HOH . 
J 5 HOH A 44 8047 76 HOH HOH . 
J 5 HOH A 45 8048 77 HOH HOH . 
J 5 HOH A 46 8049 80 HOH HOH . 
J 5 HOH A 47 8050 82 HOH HOH . 
J 5 HOH A 48 8051 88 HOH HOH . 
J 5 HOH A 49 8052 90 HOH HOH . 
J 5 HOH A 50 8053 94 HOH HOH . 
J 5 HOH A 51 8054 95 HOH HOH . 
J 5 HOH A 52 8055 98 HOH HOH . 
J 5 HOH A 53 8056 102 HOH HOH . 
J 5 HOH A 54 8057 103 HOH HOH . 
J 5 HOH A 55 8058 104 HOH HOH . 
J 5 HOH A 56 8059 105 HOH HOH . 
J 5 HOH A 57 8060 106 HOH HOH . 
J 5 HOH A 58 8061 108 HOH HOH . 
J 5 HOH A 59 8062 111 HOH HOH . 
J 5 HOH A 60 8063 115 HOH HOH . 
J 5 HOH A 61 8064 116 HOH HOH . 
J 5 HOH A 62 8065 118 HOH HOH . 
J 5 HOH A 63 8066 119 HOH HOH . 
J 5 HOH A 64 8067 121 HOH HOH . 
J 5 HOH A 65 8068 123 HOH HOH . 
J 5 HOH A 66 8069 125 HOH HOH . 
J 5 HOH A 67 8070 126 HOH HOH . 
J 5 HOH A 68 8071 127 HOH HOH . 
J 5 HOH A 69 8072 128 HOH HOH . 
J 5 HOH A 70 8073 129 HOH HOH . 
J 5 HOH A 71 8074 130 HOH HOH . 
J 5 HOH A 72 8075 132 HOH HOH . 
J 5 HOH A 73 8076 134 HOH HOH . 
J 5 HOH A 74 8077 136 HOH HOH . 
J 5 HOH A 75 8078 138 HOH HOH . 
J 5 HOH A 76 8079 139 HOH HOH . 
J 5 HOH A 77 8080 141 HOH HOH . 
J 5 HOH A 78 8081 146 HOH HOH . 
J 5 HOH A 79 8082 147 HOH HOH . 
J 5 HOH A 80 8083 149 HOH HOH . 
J 5 HOH A 81 8084 151 HOH HOH . 
J 5 HOH A 82 8085 152 HOH HOH . 
J 5 HOH A 83 8086 153 HOH HOH . 
J 5 HOH A 84 8087 155 HOH HOH . 
J 5 HOH A 85 8088 156 HOH HOH . 
J 5 HOH A 86 8089 157 HOH HOH . 
K 5 HOH B 1 9010 1 HOH HOH . 
K 5 HOH B 2 9011 2 HOH HOH . 
K 5 HOH B 3 9012 6 HOH HOH . 
K 5 HOH B 4 9013 12 HOH HOH . 
K 5 HOH B 5 9014 13 HOH HOH . 
K 5 HOH B 6 9015 14 HOH HOH . 
K 5 HOH B 7 9016 15 HOH HOH . 
K 5 HOH B 8 9017 16 HOH HOH . 
K 5 HOH B 9 9018 17 HOH HOH . 
K 5 HOH B 10 9019 21 HOH HOH . 
K 5 HOH B 11 9020 22 HOH HOH . 
K 5 HOH B 12 9021 23 HOH HOH . 
K 5 HOH B 13 9022 26 HOH HOH . 
K 5 HOH B 14 9023 27 HOH HOH . 
K 5 HOH B 15 9024 28 HOH HOH . 
K 5 HOH B 16 9025 29 HOH HOH . 
K 5 HOH B 17 9026 34 HOH HOH . 
K 5 HOH B 18 9027 36 HOH HOH . 
K 5 HOH B 19 9028 37 HOH HOH . 
K 5 HOH B 20 9029 41 HOH HOH . 
K 5 HOH B 21 9030 50 HOH HOH . 
K 5 HOH B 22 9031 52 HOH HOH . 
K 5 HOH B 23 9032 53 HOH HOH . 
K 5 HOH B 24 9033 54 HOH HOH . 
K 5 HOH B 25 9034 55 HOH HOH . 
K 5 HOH B 26 9035 56 HOH HOH . 
K 5 HOH B 27 9036 57 HOH HOH . 
K 5 HOH B 28 9037 62 HOH HOH . 
K 5 HOH B 29 9038 63 HOH HOH . 
K 5 HOH B 30 9039 67 HOH HOH . 
K 5 HOH B 31 9040 69 HOH HOH . 
K 5 HOH B 32 9041 73 HOH HOH . 
K 5 HOH B 33 9042 78 HOH HOH . 
K 5 HOH B 34 9043 79 HOH HOH . 
K 5 HOH B 35 9044 81 HOH HOH . 
K 5 HOH B 36 9045 83 HOH HOH . 
K 5 HOH B 37 9046 84 HOH HOH . 
K 5 HOH B 38 9047 85 HOH HOH . 
K 5 HOH B 39 9048 86 HOH HOH . 
K 5 HOH B 40 9049 87 HOH HOH . 
K 5 HOH B 41 9050 89 HOH HOH . 
K 5 HOH B 42 9051 91 HOH HOH . 
K 5 HOH B 43 9052 92 HOH HOH . 
K 5 HOH B 44 9053 93 HOH HOH . 
K 5 HOH B 45 9054 96 HOH HOH . 
K 5 HOH B 46 9055 97 HOH HOH . 
K 5 HOH B 47 9056 99 HOH HOH . 
K 5 HOH B 48 9057 100 HOH HOH . 
K 5 HOH B 49 9058 101 HOH HOH . 
K 5 HOH B 50 9059 107 HOH HOH . 
K 5 HOH B 51 9060 109 HOH HOH . 
K 5 HOH B 52 9061 110 HOH HOH . 
K 5 HOH B 53 9062 112 HOH HOH . 
K 5 HOH B 54 9063 113 HOH HOH . 
K 5 HOH B 55 9064 114 HOH HOH . 
K 5 HOH B 56 9065 117 HOH HOH . 
K 5 HOH B 57 9066 120 HOH HOH . 
K 5 HOH B 58 9067 122 HOH HOH . 
K 5 HOH B 59 9068 124 HOH HOH . 
K 5 HOH B 60 9069 131 HOH HOH . 
K 5 HOH B 61 9070 133 HOH HOH . 
K 5 HOH B 62 9071 135 HOH HOH . 
K 5 HOH B 63 9072 137 HOH HOH . 
K 5 HOH B 64 9073 140 HOH HOH . 
K 5 HOH B 65 9074 142 HOH HOH . 
K 5 HOH B 66 9075 143 HOH HOH . 
K 5 HOH B 67 9076 144 HOH HOH . 
K 5 HOH B 68 9077 145 HOH HOH . 
K 5 HOH B 69 9078 148 HOH HOH . 
K 5 HOH B 70 9079 150 HOH HOH . 
K 5 HOH B 71 9080 154 HOH HOH . 
K 5 HOH B 72 9081 158 HOH HOH . 
K 5 HOH B 73 9082 159 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 PEP . . . D 3 28.649 42.238 17.632 1 31.35 ? C1 PEP 8002 A 1 
HETATM 2 O O1 PEP . . . D 3 27.655 42.345 16.814 1 32.32 ? O1 PEP 8002 A 1 
HETATM 3 O O2' PEP . . . D 3 29.355 43.179 17.926 1 30.72 ? O2' PEP 8002 A 1 
HETATM 4 C C2 PEP . . . D 3 28.846 40.834 18.197 1 29.43 ? C2 PEP 8002 A 1 
HETATM 5 C C3 PEP . . . D 3 28.304 39.655 17.766 1 30.63 ? C3 PEP 8002 A 1 
HETATM 6 O O2 PEP . . . D 3 29.697 40.784 19.316 1 30.87 ? O2 PEP 8002 A 1 
HETATM 7 P P PEP . . . D 3 30.604 39.556 19.823 1 27.58 ? P PEP 8002 A 1 
HETATM 8 O O1P PEP . . . D 3 31.203 38.91 18.552 1 25.83 ? O1P PEP 8002 A 1 
HETATM 9 O O2P PEP . . . D 3 29.648 38.688 20.577 1 25.54 ? O2P PEP 8002 A 1 
HETATM 10 O O3P PEP . . . D 3 31.723 40.124 20.598 1 32.1 ? O3P PEP 8002 A 1 
#
_model_server_stats.io_time_ms              58 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           10 
#