data_1RZU
#
_model_server_result.job_id            V7_yuFXyheIokc9J91ZPMg 
_model_server_result.datetime_utc      '2024-11-28 13:08:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1rzu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2531}' 
#
_entry.id    1RZU 
#
_exptl.entry_id    1RZU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.19 
_cell.angle_gamma         90 
_cell.entry_id            1RZU 
_cell.length_a            69.357 
_cell.length_b            88.115 
_cell.length_c            84.463 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1RZU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1RZU 
_atom_sites.fract_transf_matrix[1][1]    0.014418 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002075 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011349 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011961 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 1531 531 ADP ADP . 
D 2 ADP B 1 2531 531 ADP ADP . 
E 3 HOH A 1 1532 50 HOH HOH . 
E 3 HOH A 2 1533 97 HOH HOH . 
E 3 HOH A 3 1534 2 HOH HOH . 
E 3 HOH A 4 1535 7 HOH HOH . 
E 3 HOH A 5 1536 9 HOH HOH . 
E 3 HOH A 6 1537 10 HOH HOH . 
E 3 HOH A 7 1538 11 HOH HOH . 
E 3 HOH A 8 1539 12 HOH HOH . 
E 3 HOH A 9 1540 14 HOH HOH . 
E 3 HOH A 10 1541 15 HOH HOH . 
E 3 HOH A 11 1542 16 HOH HOH . 
E 3 HOH A 12 1543 17 HOH HOH . 
E 3 HOH A 13 1544 27 HOH HOH . 
E 3 HOH A 14 1545 28 HOH HOH . 
E 3 HOH A 15 1546 29 HOH HOH . 
E 3 HOH A 16 1547 30 HOH HOH . 
E 3 HOH A 17 1548 33 HOH HOH . 
E 3 HOH A 18 1549 35 HOH HOH . 
E 3 HOH A 19 1550 36 HOH HOH . 
E 3 HOH A 20 1551 37 HOH HOH . 
E 3 HOH A 21 1552 40 HOH HOH . 
E 3 HOH A 22 1553 41 HOH HOH . 
E 3 HOH A 23 1554 42 HOH HOH . 
E 3 HOH A 24 1555 46 HOH HOH . 
E 3 HOH A 25 1556 47 HOH HOH . 
E 3 HOH A 26 1557 53 HOH HOH . 
E 3 HOH A 27 1558 57 HOH HOH . 
E 3 HOH A 28 1559 58 HOH HOH . 
E 3 HOH A 29 1560 59 HOH HOH . 
E 3 HOH A 30 1561 61 HOH HOH . 
E 3 HOH A 31 1562 62 HOH HOH . 
E 3 HOH A 32 1563 66 HOH HOH . 
E 3 HOH A 33 1564 69 HOH HOH . 
E 3 HOH A 34 1565 70 HOH HOH . 
E 3 HOH A 35 1566 71 HOH HOH . 
E 3 HOH A 36 1567 72 HOH HOH . 
E 3 HOH A 37 1568 73 HOH HOH . 
E 3 HOH A 38 1569 75 HOH HOH . 
E 3 HOH A 39 1570 77 HOH HOH . 
E 3 HOH A 40 1571 79 HOH HOH . 
E 3 HOH A 41 1572 80 HOH HOH . 
E 3 HOH A 42 1573 83 HOH HOH . 
E 3 HOH A 43 1574 84 HOH HOH . 
E 3 HOH A 44 1575 90 HOH HOH . 
E 3 HOH A 45 1576 91 HOH HOH . 
E 3 HOH A 46 1577 92 HOH HOH . 
E 3 HOH A 47 1578 93 HOH HOH . 
E 3 HOH A 48 1579 95 HOH HOH . 
E 3 HOH A 49 1580 98 HOH HOH . 
E 3 HOH A 50 1581 99 HOH HOH . 
E 3 HOH A 51 1582 101 HOH HOH . 
E 3 HOH A 52 1583 102 HOH HOH . 
E 3 HOH A 53 1584 104 HOH HOH . 
E 3 HOH A 54 1585 105 HOH HOH . 
E 3 HOH A 55 1586 106 HOH HOH . 
E 3 HOH A 56 1587 110 HOH HOH . 
E 3 HOH A 57 1588 112 HOH HOH . 
E 3 HOH A 58 1589 114 HOH HOH . 
E 3 HOH A 59 1590 115 HOH HOH . 
E 3 HOH A 60 1591 116 HOH HOH . 
E 3 HOH A 61 1592 118 HOH HOH . 
E 3 HOH A 62 1593 122 HOH HOH . 
E 3 HOH A 63 1594 123 HOH HOH . 
E 3 HOH A 64 1595 125 HOH HOH . 
E 3 HOH A 65 1596 127 HOH HOH . 
E 3 HOH A 66 1597 129 HOH HOH . 
E 3 HOH A 67 1598 131 HOH HOH . 
E 3 HOH A 68 1599 132 HOH HOH . 
E 3 HOH A 69 1600 134 HOH HOH . 
E 3 HOH A 70 1601 135 HOH HOH . 
E 3 HOH A 71 1602 139 HOH HOH . 
E 3 HOH A 72 1603 142 HOH HOH . 
E 3 HOH A 73 1604 143 HOH HOH . 
E 3 HOH A 74 1605 154 HOH HOH . 
E 3 HOH A 75 1606 155 HOH HOH . 
E 3 HOH A 76 1607 159 HOH HOH . 
E 3 HOH A 77 1608 160 HOH HOH . 
E 3 HOH A 78 1609 161 HOH HOH . 
E 3 HOH A 79 1610 164 HOH HOH . 
E 3 HOH A 80 1611 168 HOH HOH . 
E 3 HOH A 81 1612 170 HOH HOH . 
E 3 HOH A 82 1613 171 HOH HOH . 
E 3 HOH A 83 1614 172 HOH HOH . 
E 3 HOH A 84 1615 174 HOH HOH . 
E 3 HOH A 85 1616 175 HOH HOH . 
E 3 HOH A 86 1617 176 HOH HOH . 
E 3 HOH A 87 1618 178 HOH HOH . 
E 3 HOH A 88 1619 179 HOH HOH . 
E 3 HOH A 89 1620 183 HOH HOH . 
E 3 HOH A 90 1621 185 HOH HOH . 
E 3 HOH A 91 1622 187 HOH HOH . 
E 3 HOH A 92 1623 188 HOH HOH . 
E 3 HOH A 93 1624 189 HOH HOH . 
E 3 HOH A 94 1625 192 HOH HOH . 
E 3 HOH A 95 1626 193 HOH HOH . 
E 3 HOH A 96 1627 194 HOH HOH . 
E 3 HOH A 97 1628 195 HOH HOH . 
E 3 HOH A 98 1629 197 HOH HOH . 
E 3 HOH A 99 1630 198 HOH HOH . 
E 3 HOH A 100 1631 201 HOH HOH . 
E 3 HOH A 101 1632 204 HOH HOH . 
E 3 HOH A 102 1633 205 HOH HOH . 
E 3 HOH A 103 1634 206 HOH HOH . 
E 3 HOH A 104 1635 214 HOH HOH . 
E 3 HOH A 105 1636 215 HOH HOH . 
E 3 HOH A 106 1637 218 HOH HOH . 
E 3 HOH A 107 1638 219 HOH HOH . 
E 3 HOH A 108 1639 220 HOH HOH . 
F 3 HOH B 1 2532 1 HOH HOH . 
F 3 HOH B 2 2533 3 HOH HOH . 
F 3 HOH B 3 2534 4 HOH HOH . 
F 3 HOH B 4 2535 5 HOH HOH . 
F 3 HOH B 5 2536 6 HOH HOH . 
F 3 HOH B 6 2537 13 HOH HOH . 
F 3 HOH B 7 2538 18 HOH HOH . 
F 3 HOH B 8 2539 19 HOH HOH . 
F 3 HOH B 9 2540 20 HOH HOH . 
F 3 HOH B 10 2541 22 HOH HOH . 
F 3 HOH B 11 2542 23 HOH HOH . 
F 3 HOH B 12 2543 24 HOH HOH . 
F 3 HOH B 13 2544 25 HOH HOH . 
F 3 HOH B 14 2545 26 HOH HOH . 
F 3 HOH B 15 2546 31 HOH HOH . 
F 3 HOH B 16 2547 32 HOH HOH . 
F 3 HOH B 17 2548 34 HOH HOH . 
F 3 HOH B 18 2549 38 HOH HOH . 
F 3 HOH B 19 2550 39 HOH HOH . 
F 3 HOH B 20 2551 43 HOH HOH . 
F 3 HOH B 21 2552 44 HOH HOH . 
F 3 HOH B 22 2553 45 HOH HOH . 
F 3 HOH B 23 2554 48 HOH HOH . 
F 3 HOH B 24 2555 49 HOH HOH . 
F 3 HOH B 25 2556 51 HOH HOH . 
F 3 HOH B 26 2557 52 HOH HOH . 
F 3 HOH B 27 2558 54 HOH HOH . 
F 3 HOH B 28 2559 55 HOH HOH . 
F 3 HOH B 29 2560 56 HOH HOH . 
F 3 HOH B 30 2561 60 HOH HOH . 
F 3 HOH B 31 2562 63 HOH HOH . 
F 3 HOH B 32 2563 64 HOH HOH . 
F 3 HOH B 33 2564 65 HOH HOH . 
F 3 HOH B 34 2565 67 HOH HOH . 
F 3 HOH B 35 2566 68 HOH HOH . 
F 3 HOH B 36 2567 74 HOH HOH . 
F 3 HOH B 37 2568 76 HOH HOH . 
F 3 HOH B 38 2569 78 HOH HOH . 
F 3 HOH B 39 2570 81 HOH HOH . 
F 3 HOH B 40 2571 85 HOH HOH . 
F 3 HOH B 41 2572 86 HOH HOH . 
F 3 HOH B 42 2573 87 HOH HOH . 
F 3 HOH B 43 2574 88 HOH HOH . 
F 3 HOH B 44 2575 89 HOH HOH . 
F 3 HOH B 45 2576 94 HOH HOH . 
F 3 HOH B 46 2577 96 HOH HOH . 
F 3 HOH B 47 2578 100 HOH HOH . 
F 3 HOH B 48 2579 103 HOH HOH . 
F 3 HOH B 49 2580 107 HOH HOH . 
F 3 HOH B 50 2581 108 HOH HOH . 
F 3 HOH B 51 2582 109 HOH HOH . 
F 3 HOH B 52 2583 111 HOH HOH . 
F 3 HOH B 53 2584 113 HOH HOH . 
F 3 HOH B 54 2585 117 HOH HOH . 
F 3 HOH B 55 2586 119 HOH HOH . 
F 3 HOH B 56 2587 120 HOH HOH . 
F 3 HOH B 57 2588 121 HOH HOH . 
F 3 HOH B 58 2589 126 HOH HOH . 
F 3 HOH B 59 2590 128 HOH HOH . 
F 3 HOH B 60 2591 130 HOH HOH . 
F 3 HOH B 61 2592 133 HOH HOH . 
F 3 HOH B 62 2593 136 HOH HOH . 
F 3 HOH B 63 2594 137 HOH HOH . 
F 3 HOH B 64 2595 140 HOH HOH . 
F 3 HOH B 65 2596 145 HOH HOH . 
F 3 HOH B 66 2597 146 HOH HOH . 
F 3 HOH B 67 2598 147 HOH HOH . 
F 3 HOH B 68 2599 148 HOH HOH . 
F 3 HOH B 69 2600 149 HOH HOH . 
F 3 HOH B 70 2601 150 HOH HOH . 
F 3 HOH B 71 2602 151 HOH HOH . 
F 3 HOH B 72 2603 152 HOH HOH . 
F 3 HOH B 73 2604 153 HOH HOH . 
F 3 HOH B 74 2605 158 HOH HOH . 
F 3 HOH B 75 2606 162 HOH HOH . 
F 3 HOH B 76 2607 163 HOH HOH . 
F 3 HOH B 77 2608 169 HOH HOH . 
F 3 HOH B 78 2609 177 HOH HOH . 
F 3 HOH B 79 2610 180 HOH HOH . 
F 3 HOH B 80 2611 182 HOH HOH . 
F 3 HOH B 81 2612 184 HOH HOH . 
F 3 HOH B 82 2613 186 HOH HOH . 
F 3 HOH B 83 2614 190 HOH HOH . 
F 3 HOH B 84 2615 191 HOH HOH . 
F 3 HOH B 85 2616 196 HOH HOH . 
F 3 HOH B 86 2617 199 HOH HOH . 
F 3 HOH B 87 2618 200 HOH HOH . 
F 3 HOH B 88 2619 202 HOH HOH . 
F 3 HOH B 89 2620 203 HOH HOH . 
F 3 HOH B 90 2621 207 HOH HOH . 
F 3 HOH B 91 2622 208 HOH HOH . 
F 3 HOH B 92 2623 209 HOH HOH . 
F 3 HOH B 93 2624 210 HOH HOH . 
F 3 HOH B 94 2625 211 HOH HOH . 
F 3 HOH B 95 2626 212 HOH HOH . 
F 3 HOH B 96 2627 213 HOH HOH . 
F 3 HOH B 97 2628 216 HOH HOH . 
F 3 HOH B 98 2629 217 HOH HOH . 
F 3 HOH B 99 2630 221 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . D 2 3.519 45.99 25.73 1 64.85 ? PB ADP 2531 B 1 
HETATM 2 O O1B ADP . . . D 2 2.827 47.24 25.205 1 59.33 ? O1B ADP 2531 B 1 
HETATM 3 O O2B ADP . . . D 2 4.755 45.526 24.968 1 62.47 ? O2B ADP 2531 B 1 
HETATM 4 O O3B ADP . . . D 2 3.481 45.861 27.242 1 60.25 ? O3B ADP 2531 B 1 
HETATM 5 P PA ADP . . . D 2 1.431 44.632 26.301 1 52.09 ? PA ADP 2531 B 1 
HETATM 6 O O1A ADP . . . D 2 0.956 45.836 27.052 1 46.76 ? O1A ADP 2531 B 1 
HETATM 7 O O2A ADP . . . D 2 0.657 43.302 26.355 1 57.68 ? O2A ADP 2531 B 1 
HETATM 8 O O3A ADP . . . D 2 2.513 44.878 25.211 1 57.3 ? O3A ADP 2531 B 1 
HETATM 9 O O5' ADP . . . D 2 0.523 44.907 24.996 1 43.11 ? O5' ADP 2531 B 1 
HETATM 10 C C5' ADP . . . D 2 0.704 44.085 23.857 1 38.54 ? C5' ADP 2531 B 1 
HETATM 11 C C4' ADP . . . D 2 -0.365 44.203 22.78 1 38.01 ? C4' ADP 2531 B 1 
HETATM 12 O O4' ADP . . . D 2 -1.46 43.324 23.032 1 38.04 ? O4' ADP 2531 B 1 
HETATM 13 C C3' ADP . . . D 2 -0.948 45.588 22.69 1 35.94 ? C3' ADP 2531 B 1 
HETATM 14 O O3' ADP . . . D 2 -1.292 45.778 21.352 1 33.28 ? O3' ADP 2531 B 1 
HETATM 15 C C2' ADP . . . D 2 -2.128 45.489 23.617 1 36.14 ? C2' ADP 2531 B 1 
HETATM 16 O O2' ADP . . . D 2 -3.123 46.481 23.412 1 32.37 ? O2' ADP 2531 B 1 
HETATM 17 C C1' ADP . . . D 2 -2.616 44.061 23.382 1 35.51 ? C1' ADP 2531 B 1 
HETATM 18 N N9 ADP . . . D 2 -3.383 43.612 24.546 1 35.8 ? N9 ADP 2531 B 1 
HETATM 19 C C8 ADP . . . D 2 -3.256 44.094 25.8 1 36.67 ? C8 ADP 2531 B 1 
HETATM 20 N N7 ADP . . . D 2 -4.169 43.538 26.611 1 35.78 ? N7 ADP 2531 B 1 
HETATM 21 C C5 ADP . . . D 2 -4.897 42.725 25.876 1 32.94 ? C5 ADP 2531 B 1 
HETATM 22 C C6 ADP . . . D 2 -6.026 41.883 26.202 1 36.18 ? C6 ADP 2531 B 1 
HETATM 23 N N6 ADP . . . D 2 -6.445 41.863 27.5 1 33.68 ? N6 ADP 2531 B 1 
HETATM 24 N N1 ADP . . . D 2 -6.553 41.191 25.203 1 34.46 ? N1 ADP 2531 B 1 
HETATM 25 C C2 ADP . . . D 2 -6.069 41.268 23.943 1 36.02 ? C2 ADP 2531 B 1 
HETATM 26 N N3 ADP . . . D 2 -5.034 42.018 23.571 1 33.65 ? N3 ADP 2531 B 1 
HETATM 27 C C4 ADP . . . D 2 -4.431 42.778 24.509 1 36.23 ? C4 ADP 2531 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           27 
#