data_1RZY # _model_server_result.job_id 8GoooIN-sb2Fy_0GvZjE_Q _model_server_result.datetime_utc '2024-11-16 18:31:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1rzy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 1RZY # _exptl.entry_id 1RZY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.373 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-(N-ETHYL-SULFAMOYL)ADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1RZY _cell.length_a 39.888 _cell.length_b 39.888 _cell.length_c 142.286 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1RZY _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 142.286 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H18 N6 O6 S' _chem_comp.formula_weight 374.373 _chem_comp.id 5AS _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-(N-ETHYL-SULFAMOYL)ADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S N1S 5AS sing 1 n n S O2S 5AS doub 2 n n S O3S 5AS doub 3 n n S O5' 5AS sing 4 n n N1S C10 5AS sing 5 n n N1S H1S 5AS sing 6 n n O5' C5' 5AS sing 7 n n C5' C4' 5AS sing 8 n n C5' "H5'1" 5AS sing 9 n n C5' "H5'2" 5AS sing 10 n n C4' O4' 5AS sing 11 n n C4' C3' 5AS sing 12 n n C4' H4' 5AS sing 13 n n O4' C1' 5AS sing 14 n n C3' O3' 5AS sing 15 n n C3' C2' 5AS sing 16 n n C3' H3' 5AS sing 17 n n O3' "HO'3" 5AS sing 18 n n C2' O2' 5AS sing 19 n n C2' C1' 5AS sing 20 n n C2' H2' 5AS sing 21 n n O2' "HO'2" 5AS sing 22 n n C1' N9 5AS sing 23 n n C1' H1' 5AS sing 24 n n N9 C8 5AS sing 25 n y N9 C4 5AS sing 26 n y C8 N7 5AS doub 27 n y C8 H8 5AS sing 28 n n N7 C5 5AS sing 29 n y C5 C6 5AS doub 30 n y C5 C4 5AS sing 31 n y C6 N6 5AS sing 32 n n C6 N1 5AS sing 33 n y N6 H61 5AS sing 34 n n N6 H62 5AS sing 35 n n N1 C2 5AS doub 36 n y C2 N3 5AS sing 37 n y C2 H2 5AS sing 38 n n N3 C4 5AS doub 39 n y C10 C11 5AS sing 40 n n C10 H101 5AS sing 41 n n C10 H102 5AS sing 42 n n C11 H111 5AS sing 43 n n C11 H112 5AS sing 44 n n C11 H113 5AS sing 45 n n # _atom_sites.entry_id 1RZY _atom_sites.fract_transf_matrix[1][1] 0.02507 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02507 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007028 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 5AS A 1 301 301 5AS 5AS . C 3 HOH A 1 211 211 HOH HOH . C 3 HOH A 2 212 212 HOH HOH . C 3 HOH A 3 213 213 HOH HOH . C 3 HOH A 4 214 214 HOH HOH . C 3 HOH A 5 215 215 HOH HOH . C 3 HOH A 6 216 216 HOH HOH . C 3 HOH A 7 217 217 HOH HOH . C 3 HOH A 8 218 218 HOH HOH . C 3 HOH A 9 219 219 HOH HOH . C 3 HOH A 10 220 220 HOH HOH . C 3 HOH A 11 221 221 HOH HOH . C 3 HOH A 12 222 222 HOH HOH . C 3 HOH A 13 223 223 HOH HOH . C 3 HOH A 14 224 224 HOH HOH . C 3 HOH A 15 225 225 HOH HOH . C 3 HOH A 16 226 226 HOH HOH . C 3 HOH A 17 227 227 HOH HOH . C 3 HOH A 18 229 229 HOH HOH . C 3 HOH A 19 230 230 HOH HOH . C 3 HOH A 20 231 231 HOH HOH . C 3 HOH A 21 233 233 HOH HOH . C 3 HOH A 22 234 234 HOH HOH . C 3 HOH A 23 235 235 HOH HOH . C 3 HOH A 24 236 236 HOH HOH . C 3 HOH A 25 237 237 HOH HOH . C 3 HOH A 26 238 238 HOH HOH . C 3 HOH A 27 240 240 HOH HOH . C 3 HOH A 28 241 241 HOH HOH . C 3 HOH A 29 242 242 HOH HOH . C 3 HOH A 30 244 244 HOH HOH . C 3 HOH A 31 245 245 HOH HOH . C 3 HOH A 32 251 251 HOH HOH . C 3 HOH A 33 253 253 HOH HOH . C 3 HOH A 34 255 255 HOH HOH . C 3 HOH A 35 256 256 HOH HOH . C 3 HOH A 36 257 257 HOH HOH . C 3 HOH A 37 258 258 HOH HOH . C 3 HOH A 38 260 260 HOH HOH . C 3 HOH A 39 262 262 HOH HOH . C 3 HOH A 40 264 264 HOH HOH . C 3 HOH A 41 265 265 HOH HOH . C 3 HOH A 42 266 266 HOH HOH . C 3 HOH A 43 267 267 HOH HOH . C 3 HOH A 44 268 268 HOH HOH . C 3 HOH A 45 269 269 HOH HOH . C 3 HOH A 46 270 270 HOH HOH . C 3 HOH A 47 271 271 HOH HOH . C 3 HOH A 48 272 272 HOH HOH . C 3 HOH A 49 273 273 HOH HOH . C 3 HOH A 50 274 274 HOH HOH . C 3 HOH A 51 275 275 HOH HOH . C 3 HOH A 52 276 276 HOH HOH . C 3 HOH A 53 277 277 HOH HOH . C 3 HOH A 54 278 278 HOH HOH . C 3 HOH A 55 280 280 HOH HOH . C 3 HOH A 56 281 281 HOH HOH . C 3 HOH A 57 282 282 HOH HOH . C 3 HOH A 58 283 283 HOH HOH . C 3 HOH A 59 284 284 HOH HOH . C 3 HOH A 60 285 285 HOH HOH . C 3 HOH A 61 286 286 HOH HOH . C 3 HOH A 62 287 287 HOH HOH . C 3 HOH A 63 288 288 HOH HOH . C 3 HOH A 64 289 289 HOH HOH . C 3 HOH A 65 290 290 HOH HOH . C 3 HOH A 66 291 291 HOH HOH . C 3 HOH A 67 292 292 HOH HOH . C 3 HOH A 68 293 293 HOH HOH . C 3 HOH A 69 294 294 HOH HOH . C 3 HOH A 70 295 295 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S 5AS . . . B 2 11.531 6.973 60.564 1 30.44 ? S 5AS 301 A 1 HETATM 2 N N1S 5AS . . . B 2 10.616 5.598 60.484 1 29.85 ? N1S 5AS 301 A 1 HETATM 3 O O2S 5AS . . . B 2 12.712 6.784 59.699 1 27.66 ? O2S 5AS 301 A 1 HETATM 4 O O3S 5AS . . . B 2 11.87 7.218 61.965 1 26.69 ? O3S 5AS 301 A 1 HETATM 5 O O5' 5AS . . . B 2 10.733 8.277 60.109 1 28.21 ? O5' 5AS 301 A 1 HETATM 6 C C5' 5AS . . . B 2 10.616 8.639 58.645 1 24.93 ? C5' 5AS 301 A 1 HETATM 7 C C4' 5AS . . . B 2 9.364 9.441 58.391 1 23.39 ? C4' 5AS 301 A 1 HETATM 8 O O4' 5AS . . . B 2 9.558 10.134 57.162 1 22.55 ? O4' 5AS 301 A 1 HETATM 9 C C3' 5AS . . . B 2 8.096 8.554 58.277 1 20.28 ? C3' 5AS 301 A 1 HETATM 10 O O3' 5AS . . . B 2 7.082 8.897 59.214 1 20.54 ? O3' 5AS 301 A 1 HETATM 11 C C2' 5AS . . . B 2 7.563 8.688 56.872 1 22.18 ? C2' 5AS 301 A 1 HETATM 12 O O2' 5AS . . . B 2 6.192 9.077 56.896 1 21.53 ? O2' 5AS 301 A 1 HETATM 13 C C1' 5AS . . . B 2 8.526 9.733 56.306 1 24.55 ? C1' 5AS 301 A 1 HETATM 14 N N9 5AS . . . B 2 8.475 10.244 54.955 1 24.58 ? N9 5AS 301 A 1 HETATM 15 C C8 5AS . . . B 2 8.958 9.633 53.827 1 24.3 ? C8 5AS 301 A 1 HETATM 16 N N7 5AS . . . B 2 8.827 10.368 52.768 1 24.78 ? N7 5AS 301 A 1 HETATM 17 C C5 5AS . . . B 2 8.22 11.552 53.18 1 23.42 ? C5 5AS 301 A 1 HETATM 18 C C6 5AS . . . B 2 7.808 12.742 52.523 1 24.14 ? C6 5AS 301 A 1 HETATM 19 N N6 5AS . . . B 2 7.98 12.933 51.193 1 23.78 ? N6 5AS 301 A 1 HETATM 20 N N1 5AS . . . B 2 7.227 13.706 53.301 1 23.85 ? N1 5AS 301 A 1 HETATM 21 C C2 5AS . . . B 2 7.057 13.522 54.614 1 23.17 ? C2 5AS 301 A 1 HETATM 22 N N3 5AS . . . B 2 7.399 12.45 55.361 1 21.53 ? N3 5AS 301 A 1 HETATM 23 C C4 5AS . . . B 2 7.989 11.463 54.589 1 23.8 ? C4 5AS 301 A 1 HETATM 24 C C10 5AS . . . B 2 9.164 5.544 60.639 1 30 ? C10 5AS 301 A 1 HETATM 25 C C11 5AS . . . B 2 8.81 6.361 61.846 1 29.4 ? C11 5AS 301 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 25 #