data_1S00 # _model_server_result.job_id vOHh1-9aYfdC4UQArIGSJQ _model_server_result.datetime_utc '2024-11-17 03:27:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":1011}' # _entry.id 1S00 # _exptl.entry_id 1S00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S00 _cell.length_a 137.731 _cell.length_b 137.731 _cell.length_c 277.153 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,O,P,Q,BA,CA,DA 1 1 D,E,F,R,S,T,U,V,W,X,Y,Z,AA,EA,FA,GA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id Q _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc3 B NE2 HIS 219 M HIS 219 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc4 B OE1 GLU 234 M GLU 234 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 B OE2 GLU 234 M GLU 234 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc6 B NE2 HIS 266 M HIS 266 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc7 D NE2 HIS 190 R HIS 190 1_555 U FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc8 D NE2 HIS 230 R HIS 230 1_555 U FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc9 E NE2 HIS 219 S HIS 219 1_555 U FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc10 E OE2 GLU 234 S GLU 234 1_555 U FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc11 E OE1 GLU 234 S GLU 234 1_555 U FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc12 E NE2 HIS 266 S HIS 266 1_555 U FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 467 n n N1 CM1 LDA sing 468 n n N1 CM2 LDA sing 469 n n N1 C1 LDA sing 470 n n CM1 HM11 LDA sing 471 n n CM1 HM12 LDA sing 472 n n CM1 HM13 LDA sing 473 n n CM2 HM21 LDA sing 474 n n CM2 HM22 LDA sing 475 n n CM2 HM23 LDA sing 476 n n C1 C2 LDA sing 477 n n C1 H11 LDA sing 478 n n C1 H12 LDA sing 479 n n C2 C3 LDA sing 480 n n C2 H21 LDA sing 481 n n C2 H22 LDA sing 482 n n C3 C4 LDA sing 483 n n C3 H31 LDA sing 484 n n C3 H32 LDA sing 485 n n C4 C5 LDA sing 486 n n C4 H41 LDA sing 487 n n C4 H42 LDA sing 488 n n C5 C6 LDA sing 489 n n C5 H51 LDA sing 490 n n C5 H52 LDA sing 491 n n C6 C7 LDA sing 492 n n C6 H61 LDA sing 493 n n C6 H62 LDA sing 494 n n C7 C8 LDA sing 495 n n C7 H71 LDA sing 496 n n C7 H72 LDA sing 497 n n C8 C9 LDA sing 498 n n C8 H81 LDA sing 499 n n C8 H82 LDA sing 500 n n C9 C10 LDA sing 501 n n C9 H91 LDA sing 502 n n C9 H92 LDA sing 503 n n C10 C11 LDA sing 504 n n C10 H101 LDA sing 505 n n C10 H102 LDA sing 506 n n C11 C12 LDA sing 507 n n C11 H111 LDA sing 508 n n C11 H112 LDA sing 509 n n C12 H121 LDA sing 510 n n C12 H122 LDA sing 511 n n C12 H123 LDA sing 512 n n # _atom_sites.entry_id 1S00 _atom_sites.fract_transf_matrix[1][1] 0.007261 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 BCL L 1 1001 1001 BCL BCL . H 4 BCL L 1 1002 1002 BCL BCL . I 4 BCL L 1 1004 1004 BCL BCL . J 5 BPH L 1 1006 1006 BPH BPH . K 6 U10 L 1 1009 1009 U10 U10 . L 7 FE2 M 1 1007 1007 FE2 FE2 . M 4 BCL M 1 1003 1003 BCL BCL . N 5 BPH M 1 1005 1005 BPH BPH . O 6 U10 M 1 1008 1008 U10 U10 . P 8 SPO M 1 1010 1010 SPO SPO . Q 9 LDA M 1 1011 1011 LDA LDA . R 4 BCL R 1 2002 2002 BCL BCL . S 5 BPH R 1 2006 2006 BPH BPH . T 6 U10 R 1 2009 2009 U10 U10 . U 7 FE2 S 1 2007 2007 FE2 FE2 . V 4 BCL S 1 2001 2001 BCL BCL . W 4 BCL S 1 2003 2003 BCL BCL . X 4 BCL S 1 2004 2004 BCL BCL . Y 5 BPH S 1 2005 2005 BPH BPH . Z 6 U10 S 1 2008 2008 U10 U10 . AA 8 SPO S 1 2010 2010 SPO SPO . BA 10 HOH L 1 1010 6 HOH HOH . BA 10 HOH L 2 1011 8 HOH HOH . BA 10 HOH L 3 1012 13 HOH HOH . BA 10 HOH L 4 1013 14 HOH HOH . BA 10 HOH L 5 1014 28 HOH HOH . BA 10 HOH L 6 1015 37 HOH HOH . BA 10 HOH L 7 1016 40 HOH HOH . BA 10 HOH L 8 1017 51 HOH HOH . BA 10 HOH L 9 1018 54 HOH HOH . BA 10 HOH L 10 1019 72 HOH HOH . BA 10 HOH L 11 1020 74 HOH HOH . BA 10 HOH L 12 1021 77 HOH HOH . BA 10 HOH L 13 1022 80 HOH HOH . BA 10 HOH L 14 1023 81 HOH HOH . BA 10 HOH L 15 1024 90 HOH HOH . BA 10 HOH L 16 1025 99 HOH HOH . BA 10 HOH L 17 1026 104 HOH HOH . BA 10 HOH L 18 1027 120 HOH HOH . BA 10 HOH L 19 1028 121 HOH HOH . BA 10 HOH L 20 1029 125 HOH HOH . BA 10 HOH L 21 1030 131 HOH HOH . BA 10 HOH L 22 1031 132 HOH HOH . BA 10 HOH L 23 1032 135 HOH HOH . BA 10 HOH L 24 1033 146 HOH HOH . BA 10 HOH L 25 1034 150 HOH HOH . BA 10 HOH L 26 1035 152 HOH HOH . CA 10 HOH M 1 1012 1 HOH HOH . CA 10 HOH M 2 1013 7 HOH HOH . CA 10 HOH M 3 1014 12 HOH HOH . CA 10 HOH M 4 1015 15 HOH HOH . CA 10 HOH M 5 1016 17 HOH HOH . CA 10 HOH M 6 1017 18 HOH HOH . CA 10 HOH M 7 1018 21 HOH HOH . CA 10 HOH M 8 1019 22 HOH HOH . CA 10 HOH M 9 1020 23 HOH HOH . CA 10 HOH M 10 1021 27 HOH HOH . CA 10 HOH M 11 1022 34 HOH HOH . CA 10 HOH M 12 1023 35 HOH HOH . CA 10 HOH M 13 1024 41 HOH HOH . CA 10 HOH M 14 1025 47 HOH HOH . CA 10 HOH M 15 1026 49 HOH HOH . CA 10 HOH M 16 1027 53 HOH HOH . CA 10 HOH M 17 1028 55 HOH HOH . CA 10 HOH M 18 1029 57 HOH HOH . CA 10 HOH M 19 1030 64 HOH HOH . CA 10 HOH M 20 1031 65 HOH HOH . CA 10 HOH M 21 1032 71 HOH HOH . CA 10 HOH M 22 1033 87 HOH HOH . CA 10 HOH M 23 1034 89 HOH HOH . CA 10 HOH M 24 1035 92 HOH HOH . CA 10 HOH M 25 1036 98 HOH HOH . CA 10 HOH M 26 1037 105 HOH HOH . CA 10 HOH M 27 1038 109 HOH HOH . CA 10 HOH M 28 1039 110 HOH HOH . CA 10 HOH M 29 1040 117 HOH HOH . CA 10 HOH M 30 1041 118 HOH HOH . CA 10 HOH M 31 1042 119 HOH HOH . CA 10 HOH M 32 1043 123 HOH HOH . CA 10 HOH M 33 1044 124 HOH HOH . CA 10 HOH M 34 1045 129 HOH HOH . CA 10 HOH M 35 1046 130 HOH HOH . CA 10 HOH M 36 1047 136 HOH HOH . CA 10 HOH M 37 1048 138 HOH HOH . CA 10 HOH M 38 1049 139 HOH HOH . CA 10 HOH M 39 1050 141 HOH HOH . CA 10 HOH M 40 1051 149 HOH HOH . CA 10 HOH M 41 1052 153 HOH HOH . CA 10 HOH M 42 1053 155 HOH HOH . DA 10 HOH H 1 261 2 HOH HOH . DA 10 HOH H 2 262 3 HOH HOH . DA 10 HOH H 3 263 5 HOH HOH . DA 10 HOH H 4 264 9 HOH HOH . DA 10 HOH H 5 265 10 HOH HOH . DA 10 HOH H 6 266 11 HOH HOH . DA 10 HOH H 7 267 16 HOH HOH . DA 10 HOH H 8 268 24 HOH HOH . DA 10 HOH H 9 269 26 HOH HOH . DA 10 HOH H 10 270 29 HOH HOH . DA 10 HOH H 11 271 30 HOH HOH . DA 10 HOH H 12 272 31 HOH HOH . DA 10 HOH H 13 273 36 HOH HOH . DA 10 HOH H 14 274 43 HOH HOH . DA 10 HOH H 15 275 45 HOH HOH . DA 10 HOH H 16 276 46 HOH HOH . DA 10 HOH H 17 277 50 HOH HOH . DA 10 HOH H 18 278 56 HOH HOH . DA 10 HOH H 19 279 58 HOH HOH . DA 10 HOH H 20 280 60 HOH HOH . DA 10 HOH H 21 281 67 HOH HOH . DA 10 HOH H 22 282 68 HOH HOH . DA 10 HOH H 23 283 75 HOH HOH . DA 10 HOH H 24 284 78 HOH HOH . DA 10 HOH H 25 285 79 HOH HOH . DA 10 HOH H 26 286 83 HOH HOH . DA 10 HOH H 27 287 84 HOH HOH . DA 10 HOH H 28 288 97 HOH HOH . DA 10 HOH H 29 289 106 HOH HOH . DA 10 HOH H 30 290 111 HOH HOH . DA 10 HOH H 31 291 113 HOH HOH . DA 10 HOH H 32 292 114 HOH HOH . DA 10 HOH H 33 293 115 HOH HOH . DA 10 HOH H 34 294 116 HOH HOH . DA 10 HOH H 35 295 122 HOH HOH . DA 10 HOH H 36 296 137 HOH HOH . DA 10 HOH H 37 297 142 HOH HOH . DA 10 HOH H 38 298 145 HOH HOH . DA 10 HOH H 39 299 156 HOH HOH . EA 10 HOH R 1 2010 4 HOH HOH . EA 10 HOH R 2 2011 25 HOH HOH . EA 10 HOH R 3 2012 61 HOH HOH . EA 10 HOH R 4 2013 62 HOH HOH . EA 10 HOH R 5 2014 63 HOH HOH . EA 10 HOH R 6 2015 70 HOH HOH . EA 10 HOH R 7 2016 76 HOH HOH . EA 10 HOH R 8 2017 91 HOH HOH . EA 10 HOH R 9 2018 96 HOH HOH . EA 10 HOH R 10 2019 128 HOH HOH . EA 10 HOH R 11 2020 134 HOH HOH . EA 10 HOH R 12 2021 144 HOH HOH . EA 10 HOH R 13 2022 148 HOH HOH . FA 10 HOH S 1 2011 20 HOH HOH . FA 10 HOH S 2 2012 32 HOH HOH . FA 10 HOH S 3 2013 33 HOH HOH . FA 10 HOH S 4 2014 38 HOH HOH . FA 10 HOH S 5 2015 42 HOH HOH . FA 10 HOH S 6 2016 44 HOH HOH . FA 10 HOH S 7 2017 48 HOH HOH . FA 10 HOH S 8 2018 59 HOH HOH . FA 10 HOH S 9 2019 66 HOH HOH . FA 10 HOH S 10 2020 69 HOH HOH . FA 10 HOH S 11 2021 73 HOH HOH . FA 10 HOH S 12 2022 82 HOH HOH . FA 10 HOH S 13 2023 85 HOH HOH . FA 10 HOH S 14 2024 86 HOH HOH . FA 10 HOH S 15 2025 100 HOH HOH . FA 10 HOH S 16 2026 101 HOH HOH . FA 10 HOH S 17 2027 102 HOH HOH . FA 10 HOH S 18 2028 107 HOH HOH . FA 10 HOH S 19 2029 108 HOH HOH . FA 10 HOH S 20 2030 127 HOH HOH . FA 10 HOH S 21 2031 133 HOH HOH . FA 10 HOH S 22 2032 140 HOH HOH . FA 10 HOH S 23 2033 151 HOH HOH . FA 10 HOH S 24 2034 154 HOH HOH . GA 10 HOH T 1 261 19 HOH HOH . GA 10 HOH T 2 262 39 HOH HOH . GA 10 HOH T 3 263 52 HOH HOH . GA 10 HOH T 4 264 88 HOH HOH . GA 10 HOH T 5 265 93 HOH HOH . GA 10 HOH T 6 266 94 HOH HOH . GA 10 HOH T 7 267 95 HOH HOH . GA 10 HOH T 8 268 103 HOH HOH . GA 10 HOH T 9 269 112 HOH HOH . GA 10 HOH T 10 270 126 HOH HOH . GA 10 HOH T 11 271 143 HOH HOH . GA 10 HOH T 12 272 147 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . Q 9 67.043 124.287 43.786 1 78.3 ? N1 LDA 1011 M 1 HETATM 2 O O1 LDA . . . Q 9 66.786 124.882 42.701 1 78.55 ? O1 LDA 1011 M 1 HETATM 3 C CM1 LDA . . . Q 9 68.488 124.317 44.043 1 78.18 ? CM1 LDA 1011 M 1 HETATM 4 C CM2 LDA . . . Q 9 66.582 125.037 44.915 1 78.7 ? CM2 LDA 1011 M 1 HETATM 5 C C1 LDA . . . Q 9 66.713 122.812 43.833 1 76.28 ? C1 LDA 1011 M 1 HETATM 6 C C2 LDA . . . Q 9 66.075 122.146 42.567 1 70.81 ? C2 LDA 1011 M 1 HETATM 7 C C3 LDA . . . Q 9 65.858 120.62 42.889 1 68.17 ? C3 LDA 1011 M 1 HETATM 8 C C4 LDA . . . Q 9 64.438 120.361 43.388 1 64.4 ? C4 LDA 1011 M 1 HETATM 9 C C5 LDA . . . Q 9 64.398 119.273 44.452 1 61.54 ? C5 LDA 1011 M 1 HETATM 10 C C6 LDA . . . Q 9 62.897 119.123 44.838 1 60.4 ? C6 LDA 1011 M 1 HETATM 11 C C7 LDA . . . Q 9 62.734 119.269 46.367 1 58.67 ? C7 LDA 1011 M 1 HETATM 12 C C8 LDA . . . Q 9 61.251 119.128 46.82 1 56.32 ? C8 LDA 1011 M 1 HETATM 13 C C9 LDA . . . Q 9 61.357 118.573 48.241 1 54.54 ? C9 LDA 1011 M 1 HETATM 14 C C10 LDA . . . Q 9 59.96 118.367 48.843 1 52.99 ? C10 LDA 1011 M 1 HETATM 15 C C11 LDA . . . Q 9 60.168 117.871 50.271 1 51.67 ? C11 LDA 1011 M 1 HETATM 16 C C12 LDA . . . Q 9 58.816 117.535 50.903 1 49.15 ? C12 LDA 1011 M 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #