data_1S05 # _model_server_result.job_id MMP3OX12sk_aPFqi7L-Bpw _model_server_result.datetime_utc '2025-03-05 02:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s05 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":130}' # _entry.id 1S05 # _exptl.entry_id 1S05 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 117 A CYS 117 1_555 B CAB HEC . A HEC 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.917 ? covale ? covale2 A SG CYS 120 A CYS 120 1_555 B CAC HEC . A HEC 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc1 A SD MET 12 A MET 12 1_555 B FE HEC . A HEC 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 A NE2 HIS 121 A HIS 121 1_555 B FE HEC . A HEC 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 129 n n FE NB HEC sing 130 n n FE NC HEC sing 131 n n FE ND HEC sing 132 n n CHA C1A HEC doub 133 n n CHA C4D HEC sing 134 n n CHA HHA HEC sing 135 n n CHB C4A HEC doub 136 n n CHB C1B HEC sing 137 n n CHB HHB HEC sing 138 n n CHC C4B HEC doub 139 n n CHC C1C HEC sing 140 n n CHC HHC HEC sing 141 n n CHD C4C HEC doub 142 n n CHD C1D HEC sing 143 n n CHD HHD HEC sing 144 n n NA C1A HEC sing 145 n y NA C4A HEC sing 146 n y C1A C2A HEC sing 147 n y C2A C3A HEC doub 148 n y C2A CAA HEC sing 149 n n C3A C4A HEC sing 150 n y C3A CMA HEC sing 151 n n CMA HMA1 HEC sing 152 n n CMA HMA2 HEC sing 153 n n CMA HMA3 HEC sing 154 n n CAA CBA HEC sing 155 n n CAA HAA1 HEC sing 156 n n CAA HAA2 HEC sing 157 n n CBA CGA HEC sing 158 n n CBA HBA1 HEC sing 159 n n CBA HBA2 HEC sing 160 n n CGA O1A HEC doub 161 n n CGA O2A HEC sing 162 n n O2A H2A HEC sing 163 n n NB C1B HEC sing 164 n y NB C4B HEC sing 165 n y C1B C2B HEC doub 166 n y C2B C3B HEC sing 167 n y C2B CMB HEC sing 168 n n C3B C4B HEC sing 169 n y C3B CAB HEC doub 170 e n CMB HMB1 HEC sing 171 n n CMB HMB2 HEC sing 172 n n CMB HMB3 HEC sing 173 n n CAB CBB HEC sing 174 n n CAB HAB HEC sing 175 n n CBB HBB1 HEC sing 176 n n CBB HBB2 HEC sing 177 n n CBB HBB3 HEC sing 178 n n NC C1C HEC sing 179 n y NC C4C HEC sing 180 n y C1C C2C HEC doub 181 n y C2C C3C HEC sing 182 n y C2C CMC HEC sing 183 n n C3C C4C HEC sing 184 n y C3C CAC HEC doub 185 e n CMC HMC1 HEC sing 186 n n CMC HMC2 HEC sing 187 n n CMC HMC3 HEC sing 188 n n CAC CBC HEC sing 189 n n CAC HAC HEC sing 190 n n CBC HBC1 HEC sing 191 n n CBC HBC2 HEC sing 192 n n CBC HBC3 HEC sing 193 n n ND C1D HEC sing 194 n y ND C4D HEC sing 195 n y C1D C2D HEC doub 196 n y C2D C3D HEC sing 197 n y C2D CMD HEC sing 198 n n C3D C4D HEC doub 199 n y C3D CAD HEC sing 200 n n CMD HMD1 HEC sing 201 n n CMD HMD2 HEC sing 202 n n CMD HMD3 HEC sing 203 n n CAD CBD HEC sing 204 n n CAD HAD1 HEC sing 205 n n CAD HAD2 HEC sing 206 n n CBD CGD HEC sing 207 n n CBD HBD1 HEC sing 208 n n CBD HBD2 HEC sing 209 n n CGD O1D HEC doub 210 n n CGD O2D HEC sing 211 n n O2D H2D HEC sing 212 n n # _atom_sites.entry_id 1S05 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 130 _pdbx_nonpoly_scheme.auth_seq_num 130 _pdbx_nonpoly_scheme.pdb_mon_id HEC _pdbx_nonpoly_scheme.auth_mon_id HEM _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 -0.551 -3.592 1.111 1 0 ? FE HEC 130 A 1 HETATM 2 C CHA HEC . . . B 2 -2.472 -6.092 -0.157 1 0 ? CHA HEC 130 A 1 HETATM 3 C CHB HEC . . . B 2 1.667 -4.073 -1.415 1 0 ? CHB HEC 130 A 1 HETATM 4 C CHC HEC . . . B 2 1.038 -0.807 2.076 1 0 ? CHC HEC 130 A 1 HETATM 5 C CHD HEC . . . B 2 -2.385 -3.558 3.876 1 0 ? CHD HEC 130 A 1 HETATM 6 N NA HEC . . . B 2 -0.419 -5.084 -0.456 1 0 ? NA HEC 130 A 1 HETATM 7 C C1A HEC . . . B 2 -1.293 -5.8 -0.828 1 0 ? C1A HEC 130 A 1 HETATM 8 C C2A HEC . . . B 2 -0.984 -6.271 -2.199 1 0 ? C2A HEC 130 A 1 HETATM 9 C C3A HEC . . . B 2 0.185 -5.707 -2.504 1 0 ? C3A HEC 130 A 1 HETATM 10 C C4A HEC . . . B 2 0.55 -4.805 -1.503 1 0 ? C4A HEC 130 A 1 HETATM 11 C CMA HEC . . . B 2 0.973 -5.906 -3.854 1 0 ? CMA HEC 130 A 1 HETATM 12 C CAA HEC . . . B 2 -1.786 -7.352 -2.864 1 0 ? CAA HEC 130 A 1 HETATM 13 C CBA HEC . . . B 2 -2.008 -6.974 -4.365 1 0 ? CBA HEC 130 A 1 HETATM 14 C CGA HEC . . . B 2 -1.789 -8.056 -5.413 1 0 ? CGA HEC 130 A 1 HETATM 15 O O1A HEC . . . B 2 -0.925 -7.769 -6.25 1 0 ? O1A HEC 130 A 1 HETATM 16 O O2A HEC . . . B 2 -2.44 -9.122 -5.372 1 0 ? O2A HEC 130 A 1 HETATM 17 N NB HEC . . . B 2 1.069 -2.61 0.463 1 0 ? NB HEC 130 A 1 HETATM 18 C C1B HEC . . . B 2 1.972 -3.1 -0.473 1 0 ? C1B HEC 130 A 1 HETATM 19 C C2B HEC . . . B 2 3.04 -2.106 -0.543 1 0 ? C2B HEC 130 A 1 HETATM 20 C C3B HEC . . . B 2 2.858 -1.133 0.385 1 0 ? C3B HEC 130 A 1 HETATM 21 C C4B HEC . . . B 2 1.634 -1.53 1.026 1 0 ? C4B HEC 130 A 1 HETATM 22 C CMB HEC . . . B 2 4.283 -2.309 -1.485 1 0 ? CMB HEC 130 A 1 HETATM 23 C CAB HEC . . . B 2 3.702 0.051 0.778 1 0 ? CAB HEC 130 A 1 HETATM 24 C CBB HEC . . . B 2 4.634 0.559 -0.335 1 0 ? CBB HEC 130 A 1 HETATM 25 N NC HEC . . . B 2 -0.686 -2.42 2.711 1 0 ? NC HEC 130 A 1 HETATM 26 C C1C HEC . . . B 2 0.014 -1.288 3.001 1 0 ? C1C HEC 130 A 1 HETATM 27 C C2C HEC . . . B 2 -0.211 -0.684 4.254 1 0 ? C2C HEC 130 A 1 HETATM 28 C C3C HEC . . . B 2 -1.216 -1.436 4.747 1 0 ? C3C HEC 130 A 1 HETATM 29 C C4C HEC . . . B 2 -1.455 -2.559 3.843 1 0 ? C4C HEC 130 A 1 HETATM 30 C CMC HEC . . . B 2 0.415 0.543 4.845 1 0 ? CMC HEC 130 A 1 HETATM 31 C CAC HEC . . . B 2 -1.855 -1.484 6.17 1 0 ? CAC HEC 130 A 1 HETATM 32 C CBC HEC . . . B 2 -1.188 -0.731 7.344 1 0 ? CBC HEC 130 A 1 HETATM 33 N ND HEC . . . B 2 -2.135 -4.632 1.763 1 0 ? ND HEC 130 A 1 HETATM 34 C C1D HEC . . . B 2 -2.788 -4.476 2.98 1 0 ? C1D HEC 130 A 1 HETATM 35 C C2D HEC . . . B 2 -3.849 -5.368 3.062 1 0 ? C2D HEC 130 A 1 HETATM 36 C C3D HEC . . . B 2 -3.901 -6.063 1.915 1 0 ? C3D HEC 130 A 1 HETATM 37 C C4D HEC . . . B 2 -2.849 -5.54 1.046 1 0 ? C4D HEC 130 A 1 HETATM 38 C CMD HEC . . . B 2 -4.89 -5.48 4.268 1 0 ? CMD HEC 130 A 1 HETATM 39 C CAD HEC . . . B 2 -5.014 -7.066 1.523 1 0 ? CAD HEC 130 A 1 HETATM 40 C CBD HEC . . . B 2 -6.255 -6.388 0.993 1 0 ? CBD HEC 130 A 1 HETATM 41 C CGD HEC . . . B 2 -6.092 -5.351 -0.102 1 0 ? CGD HEC 130 A 1 HETATM 42 O O1D HEC . . . B 2 -6.486 -5.67 -1.257 1 0 ? O1D HEC 130 A 1 HETATM 43 O O2D HEC . . . B 2 -5.425 -4.345 0.229 1 0 ? O2D HEC 130 A 1 HETATM 44 H HMA1 HEC . . . B 2 2.024 -6.096 -3.638 1 0 ? HMA1 HEC 130 A 1 HETATM 45 H HMA2 HEC . . . B 2 0.556 -6.753 -4.397 1 0 ? HMA2 HEC 130 A 1 HETATM 46 H HMA3 HEC . . . B 2 0.885 -5.006 -4.462 1 0 ? HMA3 HEC 130 A 1 HETATM 47 H HMB1 HEC . . . B 2 4.435 -3.374 -1.662 1 0 ? HMB1 HEC 130 A 1 HETATM 48 H HMB2 HEC . . . B 2 4.105 -1.805 -2.435 1 0 ? HMB2 HEC 130 A 1 HETATM 49 H HMB3 HEC . . . B 2 5.171 -1.89 -1.012 1 0 ? HMB3 HEC 130 A 1 HETATM 50 H HMC1 HEC . . . B 2 -0.17 0.871 5.705 1 0 ? HMC1 HEC 130 A 1 HETATM 51 H HMC2 HEC . . . B 2 1.433 0.314 5.164 1 0 ? HMC2 HEC 130 A 1 HETATM 52 H HMC3 HEC . . . B 2 0.439 1.335 4.098 1 0 ? HMC3 HEC 130 A 1 HETATM 53 H HMD1 HEC . . . B 2 -5.865 -5.777 3.881 1 0 ? HMD1 HEC 130 A 1 HETATM 54 H HMD2 HEC . . . B 2 -4.54 -6.224 4.982 1 0 ? HMD2 HEC 130 A 1 HETATM 55 H HMD3 HEC . . . B 2 -4.976 -4.512 4.766 1 0 ? HMD3 HEC 130 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 55 #