data_1S0N # _model_server_result.job_id mOEf93BMNAOy4q87Gmt_tg _model_server_result.datetime_utc '2024-11-16 09:28:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s0n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":804}' # _entry.id 1S0N # _exptl.entry_id 1S0N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 467.157 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S0N _cell.length_a 99.112 _cell.length_b 102.66 _cell.length_c 53.176 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S0N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C OD1 ASP 7 A ASP 7 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.322 ? metalc ? metalc2 C OD2 ASP 7 A ASP 7 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.849 ? metalc ? metalc3 C OD1 ASP 7 A ASP 7 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc4 C O PHE 8 A PHE 8 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc5 C OD2 ASP 105 A ASP 105 1_555 E CA CA . A CA 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc6 C OE2 GLU 106 A GLU 106 1_555 D CA CA . A CA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc7 C O ALA 181 A ALA 181 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.565 ? metalc ? metalc8 C O ILE 186 A ILE 186 1_555 F CA CA . A CA 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.667 ? metalc ? metalc9 D CA CA . A CA 403 1_555 G O1A DCP . A DCP 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc10 D CA CA . A CA 403 1_555 J O HOH . A HOH 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc11 D CA CA . A CA 403 1_555 J O HOH . A HOH 813 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc12 E CA CA . A CA 404 1_555 G O1G DCP . A DCP 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc13 E CA CA . A CA 404 1_555 G O2B DCP . A DCP 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc14 E CA CA . A CA 404 1_555 G O1A DCP . A DCP 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? metalc ? metalc15 F CA CA . A CA 405 1_555 J O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 P DG 1 1_555 B N3 DC 18 T DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 P DG 1 1_555 B O2 DC 18 T DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 P DG 1 1_555 B N4 DC 18 T DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 P DG 2 1_555 B N3 DC 17 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 P DG 2 1_555 B O2 DC 17 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 P DG 2 1_555 B N4 DC 17 T DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 P DC 3 1_555 B N1 DG 16 T DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 P DC 3 1_555 B O6 DG 16 T DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 P DC 3 1_555 B N2 DG 16 T DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DA 4 P DA 4 1_555 B N3 DT 15 T DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N6 DA 4 P DA 4 1_555 B O4 DT 15 T DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 5 P DC 5 1_555 B N1 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 5 P DC 5 1_555 B O6 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 5 P DC 5 1_555 B N2 DG 14 T DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DT 6 P DT 6 1_555 B N1 DA 13 T DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O4 DT 6 P DT 6 1_555 B N6 DA 13 T DA 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DG 7 P DG 7 1_555 B N3 DC 12 T DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 DG 7 P DG 7 1_555 B O2 DC 12 T DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 DG 7 P DG 7 1_555 B N4 DC 12 T DC 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DA 8 P DA 8 1_555 B N3 DT 11 T DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N6 DA 8 P DA 8 1_555 B O4 DT 11 T DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DT 9 P DT 9 1_555 B N1 DA 10 T DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 DT 9 P DT 9 1_555 B N6 DA 10 T DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N3 DC 10 P DC 10 1_555 B N1 DG 9 T DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N4 DC 10 P DC 10 1_555 B O6 DG 9 T DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O2 DC 10 P DC 10 1_555 B N2 DG 9 T DG 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N1 DA 11 P DA 11 1_555 B N3 DT 8 T DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N6 DA 11 P DA 11 1_555 B O4 DT 8 T DT 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N3 DC 12 P DC 12 1_555 B N1 DG 7 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N4 DC 12 P DC 12 1_555 B O6 DG 7 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O2 DC 12 P DC 12 1_555 B N2 DG 7 T DG 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N1 DG 13 P DG 13 1_555 B N3 DC 6 T DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N2 DG 13 P DG 13 1_555 B O2 DC 6 T DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O6 DG 13 P DG 13 1_555 B N4 DC 6 T DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H16 N3 O13 P3' _chem_comp.formula_weight 467.157 _chem_comp.id DCP _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 DCP sing 156 n n N1 C6 DCP sing 157 n n N1 C1' DCP sing 158 n n C2 N3 DCP sing 159 n n C2 O2 DCP doub 160 n n N3 C4 DCP doub 161 n n C4 C5 DCP sing 162 n n C4 N4 DCP sing 163 n n C5 C6 DCP doub 164 n n C5 H5 DCP sing 165 n n C6 H6 DCP sing 166 n n N4 HN41 DCP sing 167 n n N4 HN42 DCP sing 168 n n C1' C2' DCP sing 169 n n C1' O4' DCP sing 170 n n C1' H1' DCP sing 171 n n C2' C3' DCP sing 172 n n C2' "H2'1" DCP sing 173 n n C2' "H2'2" DCP sing 174 n n C3' C4' DCP sing 175 n n C3' O3' DCP sing 176 n n C3' H3' DCP sing 177 n n C4' O4' DCP sing 178 n n C4' C5' DCP sing 179 n n C4' H4' DCP sing 180 n n O3' HO3' DCP sing 181 n n C5' O5' DCP sing 182 n n C5' "H5'1" DCP sing 183 n n C5' "H5'2" DCP sing 184 n n O5' PA DCP sing 185 n n PA O1A DCP doub 186 n n PA O2A DCP sing 187 n n PA O3A DCP sing 188 n n O2A HOA2 DCP sing 189 n n O3A PB DCP sing 190 n n PB O1B DCP doub 191 n n PB O2B DCP sing 192 n n PB O3B DCP sing 193 n n O2B HOB2 DCP sing 194 n n O3B PG DCP sing 195 n n PG O1G DCP doub 196 n n PG O2G DCP sing 197 n n PG O3G DCP sing 198 n n O2G HOG2 DCP sing 199 n n O3G HOG3 DCP sing 200 n n # _atom_sites.entry_id 1S0N _atom_sites.fract_transf_matrix[1][1] 0.01009 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009741 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018805 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 403 403 CA CA2 . E 4 CA A 1 404 404 CA CA2 . F 4 CA A 1 405 405 CA CA2 . G 5 DCP A 1 804 804 DCP DCP . H 6 HOH P 1 14 4 HOH TIP . H 6 HOH P 2 15 5 HOH TIP . H 6 HOH P 3 16 12 HOH TIP . H 6 HOH P 4 17 16 HOH TIP . H 6 HOH P 5 18 18 HOH TIP . H 6 HOH P 6 19 19 HOH TIP . I 6 HOH T 1 19 6 HOH TIP . I 6 HOH T 2 20 7 HOH TIP . I 6 HOH T 3 21 10 HOH TIP . I 6 HOH T 4 22 24 HOH TIP . J 6 HOH A 1 805 1 HOH TIP . J 6 HOH A 2 806 2 HOH TIP . J 6 HOH A 3 807 3 HOH TIP . J 6 HOH A 4 808 8 HOH TIP . J 6 HOH A 5 809 11 HOH TIP . J 6 HOH A 6 810 13 HOH TIP . J 6 HOH A 7 811 15 HOH TIP . J 6 HOH A 8 812 17 HOH TIP . J 6 HOH A 9 813 20 HOH TIP . J 6 HOH A 10 814 21 HOH TIP . J 6 HOH A 11 815 22 HOH TIP . J 6 HOH A 12 816 23 HOH TIP . J 6 HOH A 13 817 25 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCP . . . G 5 18.962 12.096 10.181 1 52.86 ? N1 DCP 804 A 1 HETATM 2 C C2 DCP . . . G 5 17.567 12.297 10.46 1 53.64 ? C2 DCP 804 A 1 HETATM 3 N N3 DCP . . . G 5 16.95 13.495 10.017 1 52.73 ? N3 DCP 804 A 1 HETATM 4 C C4 DCP . . . G 5 17.7 14.483 9.314 1 51.19 ? C4 DCP 804 A 1 HETATM 5 C C5 DCP . . . G 5 19.077 14.29 9.044 1 52.06 ? C5 DCP 804 A 1 HETATM 6 C C6 DCP . . . G 5 19.703 13.106 9.475 1 51.18 ? C6 DCP 804 A 1 HETATM 7 O O2 DCP . . . G 5 16.908 11.438 11.074 1 56.75 ? O2 DCP 804 A 1 HETATM 8 N N4 DCP . . . G 5 17.101 15.601 8.906 1 51.65 ? N4 DCP 804 A 1 HETATM 9 C C1' DCP . . . G 5 19.585 10.836 10.639 1 52.71 ? C1' DCP 804 A 1 HETATM 10 C C2' DCP . . . G 5 19.418 9.792 9.518 1 54.69 ? C2' DCP 804 A 1 HETATM 11 C C3' DCP . . . G 5 20.742 9.835 8.794 1 54.42 ? C3' DCP 804 A 1 HETATM 12 C C4' DCP . . . G 5 21.717 10.043 9.948 1 55.63 ? C4' DCP 804 A 1 HETATM 13 O O4' DCP . . . G 5 21.024 10.967 10.858 1 54.41 ? O4' DCP 804 A 1 HETATM 14 O O3' DCP . . . G 5 20.955 8.569 8.178 1 52.96 ? O3' DCP 804 A 1 HETATM 15 C C5' DCP . . . G 5 23.049 10.764 9.598 1 55.83 ? C5' DCP 804 A 1 HETATM 16 O O5' DCP . . . G 5 22.96 12.134 9.048 1 58.34 ? O5' DCP 804 A 1 HETATM 17 P PA DCP . . . G 5 23.559 12.728 7.745 1 61.76 ? PA DCP 804 A 1 HETATM 18 O O1A DCP . . . G 5 25.011 12.442 7.652 1 58.67 ? O1A DCP 804 A 1 HETATM 19 O O2A DCP . . . G 5 23.161 14.163 7.651 1 63.84 ? O2A DCP 804 A 1 HETATM 20 O O3A DCP . . . G 5 22.832 11.892 6.629 1 61.71 ? O3A DCP 804 A 1 HETATM 21 P PB DCP . . . G 5 23.188 10.49 5.974 1 58.46 ? PB DCP 804 A 1 HETATM 22 O O1B DCP . . . G 5 21.929 9.818 5.76 1 59.19 ? O1B DCP 804 A 1 HETATM 23 O O2B DCP . . . G 5 24.108 9.785 6.787 1 59.41 ? O2B DCP 804 A 1 HETATM 24 O O3B DCP . . . G 5 23.834 10.803 4.571 1 61.24 ? O3B DCP 804 A 1 HETATM 25 P PG DCP . . . G 5 25.16 11.436 4.024 1 64.37 ? PG DCP 804 A 1 HETATM 26 O O1G DCP . . . G 5 26.059 11.443 5.18 1 65.91 ? O1G DCP 804 A 1 HETATM 27 O O2G DCP . . . G 5 24.972 12.663 3.382 1 62.37 ? O2G DCP 804 A 1 HETATM 28 O O3G DCP . . . G 5 25.666 10.434 2.977 1 62.95 ? O3G DCP 804 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 35 _model_server_stats.query_time_ms 502 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #