data_1S0Y
#
_model_server_result.job_id            XtHhPKugbIO2gpHdkMxSyA 
_model_server_result.datetime_utc      '2024-11-24 08:05:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1s0y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":101}' 
#
_entry.id    1S0Y 
#
_exptl.entry_id    1S0Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              104.061 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MALONIC ACID' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.87 
_cell.angle_gamma         90 
_cell.entry_id            1S0Y 
_cell.length_a            55.379 
_cell.length_b            100.637 
_cell.length_c            69.85 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1S0Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,N,O,S,T,U,V,W,X 1 1 
G,H,I,J,K,L,P,Q,R,Y,Z,AA,BA,CA,DA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B N PRO 2 B PRO 2 1_555 M C3 MLA . B MLA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale2 D N PRO 2 D PRO 2 1_555 N C3 MLA . D MLA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale3 F N PRO 2 F PRO 2 1_555 O C3 MLA . F MLA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.374 ? 
covale ? covale4 H N PRO 2 H PRO 2 1_555 P C3 MLA . H MLA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? 
covale ? covale5 J N PRO 2 J PRO 2 1_555 Q C3 MLA . J MLA 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.367 ? 
covale ? covale6 L N PRO 2 L PRO 2 1_555 R C3 MLA . L MLA 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? 
#
_chem_comp.formula           'C3 H4 O4' 
_chem_comp.formula_weight    104.061 
_chem_comp.id                MLA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MALONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'DICARBOXYLIC ACID C3;PROPANEDIOLIC ACID;METHANEDICARBOXYLIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1A MLA sing 237 n n 
C1 O1B MLA doub 238 n n 
C1 C2 MLA sing 239 n n 
O1A H1A MLA sing 240 n n 
C2 C3 MLA sing 241 n n 
C2 HC21 MLA sing 242 n n 
C2 HC22 MLA sing 243 n n 
C3 O3A MLA doub 244 n n 
C3 O3B MLA sing 245 n n 
O3B H3B MLA sing 246 n n 
#
_atom_sites.entry_id                     1S0Y 
_atom_sites.fract_transf_matrix[1][1]    0.018057 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002818 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009937 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01449 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 3 MLA B 1 101 1 MLA INH . 
N 3 MLA D 1 102 2 MLA INH . 
O 3 MLA F 1 103 3 MLA INH . 
P 3 MLA H 1 104 4 MLA INH . 
Q 3 MLA J 1 105 5 MLA INH . 
R 3 MLA L 1 106 6 MLA INH . 
S 4 HOH A 1 77 1 HOH HOH . 
S 4 HOH A 2 78 2 HOH HOH . 
S 4 HOH A 3 79 14 HOH HOH . 
S 4 HOH A 4 80 23 HOH HOH . 
S 4 HOH A 5 81 46 HOH HOH . 
S 4 HOH A 6 82 56 HOH HOH . 
S 4 HOH A 7 83 64 HOH HOH . 
S 4 HOH A 8 84 67 HOH HOH . 
S 4 HOH A 9 85 69 HOH HOH . 
S 4 HOH A 10 86 74 HOH HOH . 
S 4 HOH A 11 87 76 HOH HOH . 
S 4 HOH A 12 88 80 HOH HOH . 
S 4 HOH A 13 89 81 HOH HOH . 
S 4 HOH A 14 90 83 HOH HOH . 
S 4 HOH A 15 91 85 HOH HOH . 
S 4 HOH A 16 92 86 HOH HOH . 
S 4 HOH A 17 93 103 HOH HOH . 
T 4 HOH B 1 102 4 HOH HOH . 
T 4 HOH B 2 103 28 HOH HOH . 
T 4 HOH B 3 104 30 HOH HOH . 
T 4 HOH B 4 105 37 HOH HOH . 
T 4 HOH B 5 106 87 HOH HOH . 
T 4 HOH B 6 107 88 HOH HOH . 
T 4 HOH B 7 108 93 HOH HOH . 
T 4 HOH B 8 109 117 HOH HOH . 
U 4 HOH C 1 77 3 HOH HOH . 
U 4 HOH C 2 78 5 HOH HOH . 
U 4 HOH C 3 79 6 HOH HOH . 
U 4 HOH C 4 80 26 HOH HOH . 
U 4 HOH C 5 81 34 HOH HOH . 
U 4 HOH C 6 82 43 HOH HOH . 
U 4 HOH C 7 83 50 HOH HOH . 
U 4 HOH C 8 84 53 HOH HOH . 
U 4 HOH C 9 85 77 HOH HOH . 
U 4 HOH C 10 86 90 HOH HOH . 
U 4 HOH C 11 87 91 HOH HOH . 
U 4 HOH C 12 88 105 HOH HOH . 
U 4 HOH C 13 89 107 HOH HOH . 
U 4 HOH C 14 90 114 HOH HOH . 
U 4 HOH C 15 91 161 HOH HOH . 
U 4 HOH C 16 92 169 HOH HOH . 
U 4 HOH C 17 93 170 HOH HOH . 
V 4 HOH D 1 103 35 HOH HOH . 
V 4 HOH D 2 104 78 HOH HOH . 
V 4 HOH D 3 105 79 HOH HOH . 
V 4 HOH D 4 106 95 HOH HOH . 
V 4 HOH D 5 107 97 HOH HOH . 
V 4 HOH D 6 108 98 HOH HOH . 
W 4 HOH E 1 77 15 HOH HOH . 
W 4 HOH E 2 78 22 HOH HOH . 
W 4 HOH E 3 79 27 HOH HOH . 
W 4 HOH E 4 80 47 HOH HOH . 
W 4 HOH E 5 81 58 HOH HOH . 
W 4 HOH E 6 82 59 HOH HOH . 
W 4 HOH E 7 83 65 HOH HOH . 
W 4 HOH E 8 84 66 HOH HOH . 
W 4 HOH E 9 85 82 HOH HOH . 
W 4 HOH E 10 86 92 HOH HOH . 
W 4 HOH E 11 87 99 HOH HOH . 
W 4 HOH E 12 88 100 HOH HOH . 
W 4 HOH E 13 89 101 HOH HOH . 
W 4 HOH E 14 90 102 HOH HOH . 
W 4 HOH E 15 91 104 HOH HOH . 
W 4 HOH E 16 92 106 HOH HOH . 
W 4 HOH E 17 93 108 HOH HOH . 
W 4 HOH E 18 94 141 HOH HOH . 
X 4 HOH F 1 104 9 HOH HOH . 
X 4 HOH F 2 105 11 HOH HOH . 
X 4 HOH F 3 106 19 HOH HOH . 
X 4 HOH F 4 107 52 HOH HOH . 
X 4 HOH F 5 108 55 HOH HOH . 
X 4 HOH F 6 109 63 HOH HOH . 
X 4 HOH F 7 110 89 HOH HOH . 
X 4 HOH F 8 111 94 HOH HOH . 
X 4 HOH F 9 112 96 HOH HOH . 
X 4 HOH F 10 113 109 HOH HOH . 
X 4 HOH F 11 114 110 HOH HOH . 
X 4 HOH F 12 115 111 HOH HOH . 
X 4 HOH F 13 116 112 HOH HOH . 
X 4 HOH F 14 117 113 HOH HOH . 
X 4 HOH F 15 118 115 HOH HOH . 
X 4 HOH F 16 119 116 HOH HOH . 
X 4 HOH F 17 120 118 HOH HOH . 
Y 4 HOH G 1 77 18 HOH HOH . 
Y 4 HOH G 2 78 31 HOH HOH . 
Y 4 HOH G 3 79 44 HOH HOH . 
Y 4 HOH G 4 80 70 HOH HOH . 
Y 4 HOH G 5 81 119 HOH HOH . 
Y 4 HOH G 6 82 120 HOH HOH . 
Y 4 HOH G 7 83 121 HOH HOH . 
Y 4 HOH G 8 84 122 HOH HOH . 
Y 4 HOH G 9 85 123 HOH HOH . 
Y 4 HOH G 10 86 124 HOH HOH . 
Y 4 HOH G 11 87 125 HOH HOH . 
Y 4 HOH G 12 88 126 HOH HOH . 
Y 4 HOH G 13 89 127 HOH HOH . 
Y 4 HOH G 14 90 128 HOH HOH . 
Y 4 HOH G 15 91 132 HOH HOH . 
Y 4 HOH G 16 92 135 HOH HOH . 
Y 4 HOH G 17 93 136 HOH HOH . 
Y 4 HOH G 18 94 137 HOH HOH . 
Y 4 HOH G 19 95 138 HOH HOH . 
Z 4 HOH H 1 105 12 HOH HOH . 
Z 4 HOH H 2 106 13 HOH HOH . 
Z 4 HOH H 3 107 29 HOH HOH . 
Z 4 HOH H 4 108 32 HOH HOH . 
Z 4 HOH H 5 109 33 HOH HOH . 
Z 4 HOH H 6 110 45 HOH HOH . 
Z 4 HOH H 7 111 54 HOH HOH . 
Z 4 HOH H 8 112 68 HOH HOH . 
Z 4 HOH H 9 113 75 HOH HOH . 
Z 4 HOH H 10 114 84 HOH HOH . 
Z 4 HOH H 11 115 139 HOH HOH . 
Z 4 HOH H 12 116 140 HOH HOH . 
Z 4 HOH H 13 117 142 HOH HOH . 
Z 4 HOH H 14 118 143 HOH HOH . 
Z 4 HOH H 15 119 146 HOH HOH . 
Z 4 HOH H 16 120 148 HOH HOH . 
AA 4 HOH I 1 77 8 HOH HOH . 
AA 4 HOH I 2 78 17 HOH HOH . 
AA 4 HOH I 3 79 21 HOH HOH . 
AA 4 HOH I 4 80 25 HOH HOH . 
AA 4 HOH I 5 81 39 HOH HOH . 
AA 4 HOH I 6 82 40 HOH HOH . 
AA 4 HOH I 7 83 42 HOH HOH . 
AA 4 HOH I 8 84 49 HOH HOH . 
AA 4 HOH I 9 85 71 HOH HOH . 
AA 4 HOH I 10 86 72 HOH HOH . 
AA 4 HOH I 11 87 134 HOH HOH . 
AA 4 HOH I 12 88 150 HOH HOH . 
AA 4 HOH I 13 89 151 HOH HOH . 
AA 4 HOH I 14 90 152 HOH HOH . 
AA 4 HOH I 15 91 153 HOH HOH . 
AA 4 HOH I 16 92 154 HOH HOH . 
BA 4 HOH J 1 106 16 HOH HOH . 
BA 4 HOH J 2 107 48 HOH HOH . 
BA 4 HOH J 3 108 73 HOH HOH . 
BA 4 HOH J 4 109 147 HOH HOH . 
BA 4 HOH J 5 110 155 HOH HOH . 
BA 4 HOH J 6 111 156 HOH HOH . 
BA 4 HOH J 7 112 157 HOH HOH . 
CA 4 HOH K 1 77 7 HOH HOH . 
CA 4 HOH K 2 78 24 HOH HOH . 
CA 4 HOH K 3 79 36 HOH HOH . 
CA 4 HOH K 4 80 51 HOH HOH . 
CA 4 HOH K 5 81 57 HOH HOH . 
CA 4 HOH K 6 82 60 HOH HOH . 
CA 4 HOH K 7 83 61 HOH HOH . 
CA 4 HOH K 8 84 62 HOH HOH . 
CA 4 HOH K 9 85 129 HOH HOH . 
CA 4 HOH K 10 86 130 HOH HOH . 
CA 4 HOH K 11 87 131 HOH HOH . 
CA 4 HOH K 12 88 133 HOH HOH . 
CA 4 HOH K 13 89 144 HOH HOH . 
CA 4 HOH K 14 90 158 HOH HOH . 
CA 4 HOH K 15 91 159 HOH HOH . 
CA 4 HOH K 16 92 160 HOH HOH . 
CA 4 HOH K 17 93 162 HOH HOH . 
CA 4 HOH K 18 94 163 HOH HOH . 
CA 4 HOH K 19 95 171 HOH HOH . 
DA 4 HOH L 1 107 10 HOH HOH . 
DA 4 HOH L 2 108 20 HOH HOH . 
DA 4 HOH L 3 109 38 HOH HOH . 
DA 4 HOH L 4 110 41 HOH HOH . 
DA 4 HOH L 5 111 145 HOH HOH . 
DA 4 HOH L 6 112 149 HOH HOH . 
DA 4 HOH L 7 113 164 HOH HOH . 
DA 4 HOH L 8 114 165 HOH HOH . 
DA 4 HOH L 9 115 166 HOH HOH . 
DA 4 HOH L 10 116 167 HOH HOH . 
DA 4 HOH L 11 117 168 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MLA . . . M 3 30.828 1.992 34.547 1 15.02 ? C1 MLA 101 B 1 
HETATM 2 O O1A MLA . . . M 3 31.964 2.027 34.967 1 15.93 ? O1A MLA 101 B 1 
HETATM 3 O O1B MLA . . . M 3 30.005 2.862 34.816 1 13.75 ? O1B MLA 101 B 1 
HETATM 4 C C2 MLA . . . M 3 30.392 0.757 33.724 1 17.01 ? C2 MLA 101 B 1 
HETATM 5 C C3 MLA . . . M 3 29.287 1.062 32.703 1 18.12 ? C3 MLA 101 B 1 
HETATM 6 O O3B MLA . . . M 3 28.183 0.565 32.752 1 18.45 ? O3B MLA 101 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#