data_1S1C # _model_server_result.job_id N_YmpR5QUN3Bmdt3YW5GSw _model_server_result.datetime_utc '2024-11-29 23:58:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":200}' # _entry.id 1S1C # _exptl.entry_id 1S1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.86 _cell.angle_gamma 90 _cell.entry_id 1S1C _cell.length_a 34.404 _cell.length_b 89.537 _cell.length_c 98.105 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 21 A THR 19 1_555 E MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc2 A OG1 THR 39 A THR 37 1_555 E MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc3 F O2B GNP . A GNP 200 1_555 E MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 F O2G GNP . A GNP 200 1_555 E MG MG . A MG 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc5 E MG MG . A MG 300 1_555 I O HOH . A HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc6 E MG MG . A MG 300 1_555 I O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.416 ? metalc ? metalc7 B OG1 THR 21 B THR 19 1_555 G MG MG . B MG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc8 B OG1 THR 39 B THR 37 1_555 G MG MG . B MG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc9 H O2G GNP . B GNP 1200 1_555 G MG MG . B MG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc10 H O2B GNP . B GNP 1200 1_555 G MG MG . B MG 1300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc11 G MG MG . B MG 1300 1_555 J O HOH . B HOH 1301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc12 G MG MG . B MG 1300 1_555 J O HOH . B HOH 1313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 1S1C _atom_sites.fract_transf_matrix[1][1] 0.029066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000942 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010199 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 300 300 MG MG . F 4 GNP A 1 200 200 GNP GTN . G 3 MG B 1 1300 300 MG MG . H 4 GNP B 1 1200 200 GNP GTN . I 5 HOH A 1 301 1 HOH TIP . I 5 HOH A 2 302 3 HOH TIP . I 5 HOH A 3 303 4 HOH TIP . I 5 HOH A 4 304 5 HOH TIP . I 5 HOH A 5 305 6 HOH TIP . I 5 HOH A 6 306 7 HOH TIP . I 5 HOH A 7 307 9 HOH TIP . I 5 HOH A 8 308 10 HOH TIP . I 5 HOH A 9 309 12 HOH TIP . I 5 HOH A 10 310 22 HOH TIP . I 5 HOH A 11 311 25 HOH TIP . I 5 HOH A 12 312 26 HOH TIP . I 5 HOH A 13 313 27 HOH TIP . I 5 HOH A 14 314 29 HOH TIP . I 5 HOH A 15 315 31 HOH TIP . I 5 HOH A 16 316 32 HOH TIP . I 5 HOH A 17 317 33 HOH TIP . I 5 HOH A 18 318 34 HOH TIP . I 5 HOH A 19 319 35 HOH TIP . I 5 HOH A 20 320 38 HOH TIP . I 5 HOH A 21 321 43 HOH TIP . I 5 HOH A 22 322 44 HOH TIP . I 5 HOH A 23 323 45 HOH TIP . I 5 HOH A 24 324 47 HOH TIP . I 5 HOH A 25 325 48 HOH TIP . I 5 HOH A 26 326 49 HOH TIP . I 5 HOH A 27 327 50 HOH TIP . I 5 HOH A 28 328 51 HOH TIP . I 5 HOH A 29 329 52 HOH TIP . J 5 HOH B 1 1301 2 HOH TIP . J 5 HOH B 2 1302 8 HOH TIP . J 5 HOH B 3 1303 11 HOH TIP . J 5 HOH B 4 1304 13 HOH TIP . J 5 HOH B 5 1305 14 HOH TIP . J 5 HOH B 6 1306 16 HOH TIP . J 5 HOH B 7 1307 17 HOH TIP . J 5 HOH B 8 1308 18 HOH TIP . J 5 HOH B 9 1309 19 HOH TIP . J 5 HOH B 10 1310 20 HOH TIP . J 5 HOH B 11 1311 23 HOH TIP . J 5 HOH B 12 1312 28 HOH TIP . J 5 HOH B 13 1313 30 HOH TIP . J 5 HOH B 14 1314 36 HOH TIP . J 5 HOH B 15 1315 37 HOH TIP . J 5 HOH B 16 1316 39 HOH TIP . J 5 HOH B 17 1317 40 HOH TIP . J 5 HOH B 18 1318 42 HOH TIP . J 5 HOH B 19 1319 46 HOH TIP . J 5 HOH B 20 1320 53 HOH TIP . J 5 HOH B 21 1321 55 HOH TIP . K 5 HOH X 1 15 15 HOH TIP . K 5 HOH X 2 21 21 HOH TIP . K 5 HOH X 3 24 24 HOH TIP . K 5 HOH X 4 41 41 HOH TIP . L 5 HOH Y 1 54 54 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . F 4 17.018 10.025 19.967 1 22.88 ? PG GNP 200 A 1 HETATM 2 O O1G GNP . . . F 4 17.51 10.868 18.88 1 22.23 ? O1G GNP 200 A 1 HETATM 3 O O2G GNP . . . F 4 16.966 10.808 21.161 1 22.65 ? O2G GNP 200 A 1 HETATM 4 O O3G GNP . . . F 4 18.12 8.932 20.362 1 22.06 ? O3G GNP 200 A 1 HETATM 5 N N3B GNP . . . F 4 15.596 9.333 19.549 1 21.06 ? N3B GNP 200 A 1 HETATM 6 P PB GNP . . . F 4 14.651 8.309 20.423 1 18.26 ? PB GNP 200 A 1 HETATM 7 O O1B GNP . . . F 4 15.191 6.946 20.541 1 20.69 ? O1B GNP 200 A 1 HETATM 8 O O2B GNP . . . F 4 14.289 8.827 21.764 1 17.78 ? O2B GNP 200 A 1 HETATM 9 O O3A GNP . . . F 4 13.299 8.179 19.595 1 19.66 ? O3A GNP 200 A 1 HETATM 10 P PA GNP . . . F 4 11.811 8.832 19.982 1 20.6 ? PA GNP 200 A 1 HETATM 11 O O1A GNP . . . F 4 11.276 8.195 21.224 1 20.41 ? O1A GNP 200 A 1 HETATM 12 O O2A GNP . . . F 4 11.861 10.326 19.918 1 21.07 ? O2A GNP 200 A 1 HETATM 13 O O5' GNP . . . F 4 11.015 8.292 18.726 1 22.53 ? O5' GNP 200 A 1 HETATM 14 C C5' GNP . . . F 4 11.457 8.522 17.363 1 21.83 ? C5' GNP 200 A 1 HETATM 15 C C4' GNP . . . F 4 10.314 8.293 16.363 1 23.39 ? C4' GNP 200 A 1 HETATM 16 O O4' GNP . . . F 4 9.737 6.959 16.521 1 24.79 ? O4' GNP 200 A 1 HETATM 17 C C3' GNP . . . F 4 9.158 9.326 16.556 1 24.29 ? C3' GNP 200 A 1 HETATM 18 O O3' GNP . . . F 4 8.686 9.881 15.3 1 27.94 ? O3' GNP 200 A 1 HETATM 19 C C2' GNP . . . F 4 8.104 8.492 17.285 1 23.28 ? C2' GNP 200 A 1 HETATM 20 O O2' GNP . . . F 4 6.757 8.9 17.047 1 25.41 ? O2' GNP 200 A 1 HETATM 21 C C1' GNP . . . F 4 8.329 7.069 16.78 1 22.79 ? C1' GNP 200 A 1 HETATM 22 N N9 GNP . . . F 4 7.909 6.046 17.787 1 18.41 ? N9 GNP 200 A 1 HETATM 23 C C8 GNP . . . F 4 8.229 5.973 19.131 1 17.96 ? C8 GNP 200 A 1 HETATM 24 N N7 GNP . . . F 4 7.715 4.977 19.76 1 16.67 ? N7 GNP 200 A 1 HETATM 25 C C5 GNP . . . F 4 6.991 4.312 18.789 1 17.46 ? C5 GNP 200 A 1 HETATM 26 C C6 GNP . . . F 4 6.193 3.123 18.882 1 14.96 ? C6 GNP 200 A 1 HETATM 27 O O6 GNP . . . F 4 5.987 2.426 19.884 1 13.08 ? O6 GNP 200 A 1 HETATM 28 N N1 GNP . . . F 4 5.614 2.781 17.638 1 13.78 ? N1 GNP 200 A 1 HETATM 29 C C2 GNP . . . F 4 5.769 3.484 16.448 1 17.47 ? C2 GNP 200 A 1 HETATM 30 N N2 GNP . . . F 4 5.133 3.011 15.36 1 17.77 ? N2 GNP 200 A 1 HETATM 31 N N3 GNP . . . F 4 6.53 4.61 16.377 1 17.01 ? N3 GNP 200 A 1 HETATM 32 C C4 GNP . . . F 4 7.101 4.962 17.566 1 17.26 ? C4 GNP 200 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 32 #