data_1S1K # _model_server_result.job_id dEeqio0Zpt7GZuJIOVHlcg _model_server_result.datetime_utc '2024-10-19 21:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":11}' # _entry.id 1S1K # _exptl.entry_id 1S1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1S1K _cell.length_a 32.957 _cell.length_b 32.957 _cell.length_c 88.556 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 16.4785 -28.541599 14.759333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 2 A DC 2 1_555 A P 1AP 3 A 1AP 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? covale ? covale2 A O3' 1AP 3 A 1AP 3 1_555 A P DG 4 A DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.634 ? covale ? covale3 A O3' 1AP 3 A 1AP 3 1_555 A OP1 DG 4 A DG 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc1 A OP1 DT 5 A DT 5 1_555 D NA NA . A NA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc2 A OP2 DC 7 A DC 7 1_555 C CA CA . A CA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? metalc ? metalc3 A OP2 DC 7 A DC 7 8_555 C CA CA . A CA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc4 B CA CA . A CA 11 1_555 E O HOH . A HOH 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.15 ? metalc ? metalc5 B CA CA . A CA 11 1_555 E O HOH . A HOH 20 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.173 ? metalc ? metalc6 B CA CA . A CA 11 1_555 E O HOH . A HOH 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.83 ? metalc ? metalc7 B CA CA . A CA 11 1_555 E O HOH . A HOH 45 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.84 ? metalc ? metalc8 C CA CA . A CA 14 1_555 E O HOH . A HOH 23 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.355 ? metalc ? metalc9 C CA CA . A CA 14 1_555 E O HOH . A HOH 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc10 C CA CA . A CA 14 1_555 E O HOH . A HOH 28 8_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc11 D NA NA . A NA 15 1_555 E O HOH . A HOH 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? metalc ? metalc12 D NA NA . A NA 15 1_555 E O HOH . A HOH 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.731 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 A N1 DG 10 A DG 10 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 A O6 DG 10 A DG 10 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 A N2 DG 10 A DG 10 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 A N1 DG 9 A DG 9 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 A O6 DG 9 A DG 9 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 A N2 DG 9 A DG 9 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog '1AP-DT MISPAIR' hydrog7 A N2 1AP 3 A 1AP 3 1_555 A O2 DT 8 A DT 8 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N1 DG 4 A DG 4 1_555 A N3 DC 7 A DC 7 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N2 DG 4 A DG 4 1_555 A O2 DC 7 A DC 7 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A O6 DG 4 A DG 4 1_555 A N4 DC 7 A DC 7 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N3 DT 5 A DT 5 1_555 A N1 DA 6 A DA 6 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O4 DT 5 A DT 5 1_555 A N6 DA 6 A DA 6 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 6 A DA 6 1_555 A N3 DT 5 A DT 5 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 6 A DA 6 1_555 A O4 DT 5 A DT 5 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N3 DC 7 A DC 7 1_555 A N1 DG 4 A DG 4 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N4 DC 7 A DC 7 1_555 A O6 DG 4 A DG 4 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A O2 DC 7 A DC 7 1_555 A N2 DG 4 A DG 4 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-1AP MISPAIR' hydrog18 A O2 DT 8 A DT 8 1_555 A N2 1AP 3 A 1AP 3 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 DG 9 A DG 9 1_555 A N3 DC 2 A DC 2 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 DG 9 A DG 9 1_555 A O2 DC 2 A DC 2 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 DG 9 A DG 9 1_555 A N4 DC 2 A DC 2 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 10 A DG 10 1_555 A N3 DC 1 A DC 1 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 10 A DG 10 1_555 A O2 DC 1 A DC 1 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 10 A DG 10 1_555 A N4 DC 1 A DC 1 12_545 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1S1K _atom_sites.fract_transf_matrix[1][1] 0.030343 _atom_sites.fract_transf_matrix[1][2] 0.017518 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035037 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011292 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 11 11 CA CA . C 2 CA A 1 14 14 CA CA . D 3 NA A 1 15 15 NA NA . E 4 HOH A 1 12 12 HOH WAT . E 4 HOH A 2 13 13 HOH WAT . E 4 HOH A 3 16 16 HOH WAT . E 4 HOH A 4 17 17 HOH WAT . E 4 HOH A 5 18 18 HOH WAT . E 4 HOH A 6 19 19 HOH WAT . E 4 HOH A 7 20 20 HOH WAT . E 4 HOH A 8 21 21 HOH WAT . E 4 HOH A 9 22 22 HOH WAT . E 4 HOH A 10 23 23 HOH WAT . E 4 HOH A 11 24 24 HOH WAT . E 4 HOH A 12 25 25 HOH WAT . E 4 HOH A 13 26 26 HOH WAT . E 4 HOH A 14 27 27 HOH WAT . E 4 HOH A 15 28 28 HOH WAT . E 4 HOH A 16 29 29 HOH WAT . E 4 HOH A 17 30 30 HOH WAT . E 4 HOH A 18 31 31 HOH WAT . E 4 HOH A 19 32 32 HOH WAT . E 4 HOH A 20 33 33 HOH WAT . E 4 HOH A 21 34 34 HOH WAT . E 4 HOH A 22 35 35 HOH WAT . E 4 HOH A 23 36 36 HOH WAT . E 4 HOH A 24 37 37 HOH WAT . E 4 HOH A 25 38 38 HOH WAT . E 4 HOH A 26 41 41 HOH WAT . E 4 HOH A 27 42 42 HOH WAT . E 4 HOH A 28 43 43 HOH WAT . E 4 HOH A 29 44 44 HOH WAT . E 4 HOH A 30 45 45 HOH WAT . E 4 HOH A 31 46 46 HOH WAT . E 4 HOH A 32 47 47 HOH WAT . E 4 HOH A 33 48 48 HOH WAT . E 4 HOH A 34 49 49 HOH WAT . E 4 HOH A 35 50 50 HOH WAT . E 4 HOH A 36 51 51 HOH WAT . E 4 HOH A 37 52 52 HOH WAT . E 4 HOH A 38 53 53 HOH WAT . E 4 HOH A 39 54 54 HOH WAT . E 4 HOH A 40 55 55 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 29.496 _atom_site.Cartn_y -0.007 _atom_site.Cartn_z 0.017 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 20.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 11 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #