data_1S1V # _model_server_result.job_id ZNQklu1HelhodXoVGvzTnA _model_server_result.datetime_utc '2024-11-25 10:40:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1S1V # _exptl.entry_id 1S1V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 364.438 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPROPYL URACIL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S1V _cell.length_a 138.1 _cell.length_b 110.3 _cell.length_c 72.2 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C22 H24 N2 O3' _chem_comp.formula_weight 364.438 _chem_comp.id TNK _chem_comp.mon_nstd_flag . _chem_comp.name '6-BENZYL-1-BENZYLOXYMETHYL-5-ISOPROPYL URACIL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 TNK doub 321 n y C1 C6 TNK sing 322 n y C1 C13 TNK sing 323 n n C2 C3 TNK sing 324 n y C2 H2 TNK sing 325 n n C3 C4 TNK doub 326 n y C3 H3 TNK sing 327 n n C4 C5 TNK sing 328 n y C4 H4 TNK sing 329 n n C5 C6 TNK doub 330 n y C5 H5 TNK sing 331 n n C6 H6 TNK sing 332 n n C7 N8 TNK sing 333 n n C7 C12 TNK doub 334 n n C7 C13 TNK sing 335 n n N8 C9 TNK sing 336 n n N8 C17 TNK sing 337 n n C9 O9 TNK doub 338 n n C9 N10 TNK sing 339 n n N10 C11 TNK sing 340 n n N10 HN1 TNK sing 341 n n C11 O11 TNK doub 342 n n C11 C12 TNK sing 343 n n C12 C14 TNK sing 344 n n C13 H131 TNK sing 345 n n C13 H132 TNK sing 346 n n C14 C15 TNK sing 347 n n C14 C16 TNK sing 348 n n C14 H14 TNK sing 349 n n C15 H151 TNK sing 350 n n C15 H152 TNK sing 351 n n C15 H153 TNK sing 352 n n C16 H161 TNK sing 353 n n C16 H162 TNK sing 354 n n C16 H163 TNK sing 355 n n C17 O17 TNK sing 356 n n C17 H171 TNK sing 357 n n C17 H172 TNK sing 358 n n O17 C18 TNK sing 359 n n C18 C19 TNK sing 360 n n C18 H181 TNK sing 361 n n C18 H182 TNK sing 362 n n C19 C20 TNK doub 363 n y C19 C24 TNK sing 364 n y C20 C21 TNK sing 365 n y C20 H20 TNK sing 366 n n C21 C22 TNK doub 367 n y C21 H21 TNK sing 368 n n C22 C23 TNK sing 369 n y C22 H22 TNK sing 370 n n C23 C24 TNK doub 371 n y C23 H23 TNK sing 372 n n C24 H24 TNK sing 373 n n # _atom_sites.entry_id 1S1V _atom_sites.fract_transf_matrix[1][1] 0.007241 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009066 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01385 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 TNK A 1 999 999 TNK TNK . D 4 HOH A 1 1001 1001 HOH WAT . D 4 HOH A 2 1002 1002 HOH WAT . D 4 HOH A 3 1003 1003 HOH WAT . D 4 HOH A 4 1004 1004 HOH WAT . D 4 HOH A 5 1005 1005 HOH WAT . D 4 HOH A 6 1006 1006 HOH WAT . D 4 HOH A 7 1007 1007 HOH WAT . D 4 HOH A 8 1009 1009 HOH WAT . D 4 HOH A 9 1010 1010 HOH WAT . D 4 HOH A 10 1011 1011 HOH WAT . D 4 HOH A 11 1012 1012 HOH WAT . D 4 HOH A 12 1013 1013 HOH WAT . D 4 HOH A 13 1014 1014 HOH WAT . D 4 HOH A 14 1015 1015 HOH WAT . D 4 HOH A 15 1016 1016 HOH WAT . D 4 HOH A 16 1020 1020 HOH WAT . D 4 HOH A 17 1021 1021 HOH WAT . D 4 HOH A 18 1022 1022 HOH WAT . D 4 HOH A 19 1023 1023 HOH WAT . D 4 HOH A 20 1024 1024 HOH WAT . D 4 HOH A 21 1026 1026 HOH WAT . D 4 HOH A 22 1028 1028 HOH WAT . D 4 HOH A 23 1029 1029 HOH WAT . D 4 HOH A 24 1030 1030 HOH WAT . D 4 HOH A 25 1031 1031 HOH WAT . D 4 HOH A 26 1033 1033 HOH WAT . D 4 HOH A 27 1034 1034 HOH WAT . D 4 HOH A 28 1035 1035 HOH WAT . D 4 HOH A 29 1049 1049 HOH WAT . D 4 HOH A 30 1050 1050 HOH WAT . D 4 HOH A 31 1051 1051 HOH WAT . D 4 HOH A 32 1052 1052 HOH WAT . D 4 HOH A 33 1053 1053 HOH WAT . D 4 HOH A 34 1054 1054 HOH WAT . D 4 HOH A 35 1055 1055 HOH WAT . D 4 HOH A 36 1056 1056 HOH WAT . D 4 HOH A 37 1057 1057 HOH WAT . D 4 HOH A 38 1058 1058 HOH WAT . D 4 HOH A 39 1059 1059 HOH WAT . E 4 HOH B 1 1008 1008 HOH WAT . E 4 HOH B 2 1017 1017 HOH WAT . E 4 HOH B 3 1018 1018 HOH WAT . E 4 HOH B 4 1019 1019 HOH WAT . E 4 HOH B 5 1025 1025 HOH WAT . E 4 HOH B 6 1027 1027 HOH WAT . E 4 HOH B 7 1032 1032 HOH WAT . E 4 HOH B 8 1036 1036 HOH WAT . E 4 HOH B 9 1037 1037 HOH WAT . E 4 HOH B 10 1038 1038 HOH WAT . E 4 HOH B 11 1039 1039 HOH WAT . E 4 HOH B 12 1040 1040 HOH WAT . E 4 HOH B 13 1041 1041 HOH WAT . E 4 HOH B 14 1042 1042 HOH WAT . E 4 HOH B 15 1043 1043 HOH WAT . E 4 HOH B 16 1044 1044 HOH WAT . E 4 HOH B 17 1045 1045 HOH WAT . E 4 HOH B 18 1046 1046 HOH WAT . E 4 HOH B 19 1047 1047 HOH WAT . E 4 HOH B 20 1048 1048 HOH WAT . E 4 HOH B 21 1060 1060 HOH WAT . E 4 HOH B 22 1061 1061 HOH WAT . E 4 HOH B 23 1062 1062 HOH WAT . E 4 HOH B 24 1063 1063 HOH WAT . E 4 HOH B 25 1064 1064 HOH WAT . E 4 HOH B 26 1065 1065 HOH WAT . E 4 HOH B 27 1066 1066 HOH WAT . E 4 HOH B 28 1067 1067 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 TNK . . . C 3 -0.985 -34.145 25.868 1 69.18 ? C1 TNK 999 A 1 HETATM 2 C C2 TNK . . . C 3 -0.919 -33.871 27.244 1 84 ? C2 TNK 999 A 1 HETATM 3 C C3 TNK . . . C 3 -0.056 -32.841 27.73 1 86.6 ? C3 TNK 999 A 1 HETATM 4 C C4 TNK . . . C 3 0.736 -32.095 26.807 1 82.53 ? C4 TNK 999 A 1 HETATM 5 C C5 TNK . . . C 3 0.665 -32.376 25.411 1 73.7 ? C5 TNK 999 A 1 HETATM 6 C C6 TNK . . . C 3 -0.197 -33.402 24.952 1 81.29 ? C6 TNK 999 A 1 HETATM 7 C C7 TNK . . . C 3 -1.905 -35.66 23.909 1 53.23 ? C7 TNK 999 A 1 HETATM 8 N N8 TNK . . . C 3 -2.773 -34.953 23.043 1 55.63 ? N8 TNK 999 A 1 HETATM 9 C C9 TNK . . . C 3 -2.853 -35.262 21.664 1 66.05 ? C9 TNK 999 A 1 HETATM 10 O O9 TNK . . . C 3 -3.587 -34.68 20.866 1 71.09 ? O9 TNK 999 A 1 HETATM 11 N N10 TNK . . . C 3 -2.039 -36.283 21.224 1 61.46 ? N10 TNK 999 A 1 HETATM 12 C C11 TNK . . . C 3 -1.164 -37.037 21.99 1 54.82 ? C11 TNK 999 A 1 HETATM 13 O O11 TNK . . . C 3 -0.521 -37.93 21.445 1 58.64 ? O11 TNK 999 A 1 HETATM 14 C C12 TNK . . . C 3 -1.097 -36.705 23.414 1 49.78 ? C12 TNK 999 A 1 HETATM 15 C C13 TNK . . . C 3 -1.907 -35.242 25.391 1 52.67 ? C13 TNK 999 A 1 HETATM 16 C C14 TNK . . . C 3 -0.177 -37.626 24.257 1 43.84 ? C14 TNK 999 A 1 HETATM 17 C C15 TNK . . . C 3 -0.926 -38.563 25.185 1 45.1 ? C15 TNK 999 A 1 HETATM 18 C C16 TNK . . . C 3 1.056 -36.953 24.887 1 42.01 ? C16 TNK 999 A 1 HETATM 19 C C17 TNK . . . C 3 -3.7 -33.869 23.545 1 57.72 ? C17 TNK 999 A 1 HETATM 20 O O17 TNK . . . C 3 -5.034 -34.082 23.065 1 78.1 ? O17 TNK 999 A 1 HETATM 21 C C18 TNK . . . C 3 -5.991 -33.992 24.11 1 77.37 ? C18 TNK 999 A 1 HETATM 22 C C19 TNK . . . C 3 -7.233 -34.806 23.821 1 64.97 ? C19 TNK 999 A 1 HETATM 23 C C20 TNK . . . C 3 -7.148 -35.942 22.988 1 57.78 ? C20 TNK 999 A 1 HETATM 24 C C21 TNK . . . C 3 -8.259 -36.794 22.832 1 60.92 ? C21 TNK 999 A 1 HETATM 25 C C22 TNK . . . C 3 -9.467 -36.501 23.522 1 73.3 ? C22 TNK 999 A 1 HETATM 26 C C23 TNK . . . C 3 -9.549 -35.346 24.354 1 64.97 ? C23 TNK 999 A 1 HETATM 27 C C24 TNK . . . C 3 -8.43 -34.508 24.497 1 63.23 ? C24 TNK 999 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 27 #