data_1S1X # _model_server_result.job_id 2PFZkL5dN7GUOFUjtT3-tQ _model_server_result.datetime_utc '2024-11-25 12:32:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s1x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":999}' # _entry.id 1S1X # _exptl.entry_id 1S1X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.298 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S1X _cell.length_a 138.4 _cell.length_b 109 _cell.length_c 72.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S1X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 279 A LEU 279 1_555 A N CSD 280 A CSD 280 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSD 280 A CSD 280 1_555 A N LYS 281 A LYS 281 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C15 H14 N4 O' _chem_comp.formula_weight 266.298 _chem_comp.id NVP _chem_comp.mon_nstd_flag . _chem_comp.name "11-CYCLOPROPYL-5,11-DIHYDRO-4-METHYL-6H-DIPYRIDO[3,2-B:2',3'-E][1,4]DIAZEPIN-6-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NON-NUCLEOSIDE RT INHIBITOR NEVIRAPINE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA NVP sing 252 n n N1 C2 NVP sing 253 n n N1 C15 NVP sing 254 n n CA CB NVP sing 255 n n CA CC NVP sing 256 n n CA HCA NVP sing 257 n n CB CC NVP sing 258 n n CB HCB1 NVP sing 259 n n CB HCB2 NVP sing 260 n n CC HCC1 NVP sing 261 n n CC HCC2 NVP sing 262 n n N3 C4 NVP doub 263 n y N3 C2 NVP sing 264 n y C4 C5 NVP sing 265 n y C4 HC4 NVP sing 266 n n C5 C6 NVP doub 267 n y C5 HC5 NVP sing 268 n n C6 CD NVP sing 269 n n C6 C7 NVP sing 270 n y CD HCD1 NVP sing 271 n n CD HCD2 NVP sing 272 n n CD HCD3 NVP sing 273 n n C2 C7 NVP doub 274 n y C7 N8 NVP sing 275 n n N8 C9 NVP sing 276 n n N8 HN8 NVP sing 277 n n C9 OE NVP doub 278 n n C9 C10 NVP sing 279 n n C10 C15 NVP doub 280 n y C10 C11 NVP sing 281 n y C15 N14 NVP sing 282 n y C11 C12 NVP doub 283 n y C11 H11 NVP sing 284 n n C12 C13 NVP sing 285 n y C12 H12 NVP sing 286 n n C13 N14 NVP doub 287 n y C13 H13 NVP sing 288 n n # _atom_sites.entry_id 1S1X _atom_sites.fract_transf_matrix[1][1] 0.007225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NVP A 1 999 999 NVP NVP . D 4 HOH A 1 1001 1001 HOH WAT . D 4 HOH A 2 1002 1002 HOH WAT . D 4 HOH A 3 1003 1003 HOH WAT . D 4 HOH A 4 1004 1004 HOH WAT . D 4 HOH A 5 1005 1005 HOH WAT . D 4 HOH A 6 1006 1006 HOH WAT . D 4 HOH A 7 1007 1007 HOH WAT . D 4 HOH A 8 1008 1008 HOH WAT . D 4 HOH A 9 1009 1009 HOH WAT . D 4 HOH A 10 1010 1010 HOH WAT . D 4 HOH A 11 1011 1011 HOH WAT . D 4 HOH A 12 1012 1012 HOH WAT . D 4 HOH A 13 1013 1013 HOH WAT . D 4 HOH A 14 1014 1014 HOH WAT . E 4 HOH B 1 1015 1015 HOH WAT . E 4 HOH B 2 1016 1016 HOH WAT . E 4 HOH B 3 1017 1017 HOH WAT . E 4 HOH B 4 1018 1018 HOH WAT . E 4 HOH B 5 1019 1019 HOH WAT . E 4 HOH B 6 1020 1020 HOH WAT . E 4 HOH B 7 1021 1021 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 NVP . . . C 3 -0.382 -35.108 24.025 1 51.67 ? N1 NVP 999 A 1 HETATM 2 C CA NVP . . . C 3 0.222 -36.363 23.516 1 47.21 ? CA NVP 999 A 1 HETATM 3 C CB NVP . . . C 3 0.354 -37.471 24.498 1 47.18 ? CB NVP 999 A 1 HETATM 4 C CC NVP . . . C 3 -0.671 -37.545 23.423 1 50.72 ? CC NVP 999 A 1 HETATM 5 N N3 NVP . . . C 3 1.826 -34.214 24.33 1 61.96 ? N3 NVP 999 A 1 HETATM 6 C C4 NVP . . . C 3 2.662 -33.369 24.997 1 60.72 ? C4 NVP 999 A 1 HETATM 7 C C5 NVP . . . C 3 2.203 -32.529 26.049 1 59.49 ? C5 NVP 999 A 1 HETATM 8 C C6 NVP . . . C 3 0.856 -32.577 26.407 1 57.5 ? C6 NVP 999 A 1 HETATM 9 C CD NVP . . . C 3 0.327 -31.7 27.509 1 52.63 ? CD NVP 999 A 1 HETATM 10 C C2 NVP . . . C 3 0.52 -34.247 24.696 1 57.02 ? C2 NVP 999 A 1 HETATM 11 C C7 NVP . . . C 3 0 -33.434 25.719 1 55.12 ? C7 NVP 999 A 1 HETATM 12 N N8 NVP . . . C 3 -1.404 -33.417 26.013 1 51.69 ? N8 NVP 999 A 1 HETATM 13 C C9 NVP . . . C 3 -2.493 -33.502 25.232 1 60.89 ? C9 NVP 999 A 1 HETATM 14 O OE NVP . . . C 3 -3.632 -33.376 25.715 1 67.49 ? OE NVP 999 A 1 HETATM 15 C C10 NVP . . . C 3 -2.344 -33.651 23.698 1 59.96 ? C10 NVP 999 A 1 HETATM 16 C C15 NVP . . . C 3 -1.291 -34.43 23.127 1 54.44 ? C15 NVP 999 A 1 HETATM 17 C C11 NVP . . . C 3 -3.265 -33.027 22.83 1 53.3 ? C11 NVP 999 A 1 HETATM 18 C C12 NVP . . . C 3 -3.121 -33.189 21.435 1 55.58 ? C12 NVP 999 A 1 HETATM 19 C C13 NVP . . . C 3 -2.039 -33.972 20.946 1 57.9 ? C13 NVP 999 A 1 HETATM 20 N N14 NVP . . . C 3 -1.146 -34.581 21.783 1 60.54 ? N14 NVP 999 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 20 #