data_1S26
#
_model_server_result.job_id            BAc74NSCr5e1teCKnrkGmw 
_model_server_result.datetime_utc      '2024-11-04 22:15:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1s26 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1139}' 
#
_entry.id    1S26 
#
_exptl.entry_id    1S26 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              505.208 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1S26 
_cell.length_a            117.555 
_cell.length_b            167.605 
_cell.length_c            345.346 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1S26 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        23 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'I 2 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,G,H,M,N 1 1 
B,E,I,J,O,P 2 1 
C,F,K,L,Q,R 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 J N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 201 A ASP 491 1_555 G YB YB . A YB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.281 ? 
metalc ? metalc2 A OD2 ASP 201 A ASP 491 1_555 G YB YB . A YB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? 
metalc ? metalc3 A OD1 ASP 203 A ASP 493 1_555 G YB YB . A YB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc4 A OD2 ASP 203 A ASP 493 1_555 G YB YB . A YB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? 
metalc ? metalc5 A NE2 HIS 287 A HIS 577 1_555 G YB YB . A YB 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? 
metalc ? metalc6 G YB YB . A YB 901 1_555 H O1A APC . A APC 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.424 ? 
metalc ? metalc7 G YB YB . A YB 901 1_555 H O2B APC . A APC 1139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.228 ? 
metalc ? metalc8 B OD1 ASP 201 B ASP 491 1_555 I YB YB . B YB 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? 
metalc ? metalc9 B OD2 ASP 201 B ASP 491 1_555 I YB YB . B YB 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.443 ? 
metalc ? metalc10 B OD1 ASP 203 B ASP 493 1_555 I YB YB . B YB 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? 
metalc ? metalc11 B OD2 ASP 203 B ASP 493 1_555 I YB YB . B YB 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc12 C OD1 ASP 201 C ASP 491 1_555 K YB YB . C YB 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? 
metalc ? metalc13 C OD2 ASP 201 C ASP 491 1_555 K YB YB . C YB 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc14 C OD1 ASP 203 C ASP 493 1_555 K YB YB . C YB 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc15 C OD2 ASP 203 C ASP 493 1_555 K YB YB . C YB 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.014 ? 
metalc ? metalc16 C NE2 HIS 287 C HIS 577 1_555 K YB YB . C YB 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? 
metalc ? metalc17 D OD1 ASP 93 D ASP 93 1_555 N CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? 
metalc ? metalc18 D OD1 ASP 95 D ASP 95 1_555 N CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc19 D OD1 ASN 97 D ASN 97 1_555 N CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc20 D O TYR 99 D TYR 99 1_555 N CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? 
metalc ? metalc21 D OE1 GLU 104 D GLU 104 1_555 N CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? 
metalc ? metalc22 D OE2 GLU 104 D GLU 104 1_555 N CA CA . D CA 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc23 D OD1 ASP 131 D ASP 131 1_555 M CA CA . D CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? 
metalc ? metalc24 D OD1 ASP 133 D ASP 133 1_555 M CA CA . D CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? 
metalc ? metalc25 D O GLN 135 D GLN 135 1_555 M CA CA . D CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc26 D OE1 GLU 140 D GLU 140 1_555 M CA CA . D CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc27 D OE2 GLU 140 D GLU 140 1_555 M CA CA . D CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? 
metalc ? metalc28 E OD1 ASP 93 E ASP 93 1_555 P CA CA . E CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.636 ? 
metalc ? metalc29 E OD1 ASP 95 E ASP 95 1_555 P CA CA . E CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? 
metalc ? metalc30 E OD1 ASN 97 E ASN 97 1_555 P CA CA . E CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc31 E O TYR 99 E TYR 99 1_555 P CA CA . E CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? 
metalc ? metalc32 E OE1 GLU 104 E GLU 104 1_555 P CA CA . E CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? 
metalc ? metalc33 E OE2 GLU 104 E GLU 104 1_555 P CA CA . E CA 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? 
metalc ? metalc34 E OD1 ASP 131 E ASP 131 1_555 O CA CA . E CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc35 E OD1 ASP 133 E ASP 133 1_555 O CA CA . E CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc36 E O GLN 135 E GLN 135 1_555 O CA CA . E CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? 
metalc ? metalc37 E OE1 GLU 140 E GLU 140 1_555 O CA CA . E CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc38 E OE2 GLU 140 E GLU 140 1_555 O CA CA . E CA 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc39 F OD1 ASP 93 F ASP 93 1_555 R CA CA . F CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc40 F OD1 ASP 95 F ASP 95 1_555 R CA CA . F CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc41 F OD1 ASN 97 F ASN 97 1_555 R CA CA . F CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
metalc ? metalc42 F O TYR 99 F TYR 99 1_555 R CA CA . F CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc43 F OE1 GLU 104 F GLU 104 1_555 R CA CA . F CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
metalc ? metalc44 F OE2 GLU 104 F GLU 104 1_555 R CA CA . F CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.777 ? 
metalc ? metalc45 F OD1 ASP 131 F ASP 131 1_555 Q CA CA . F CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? 
metalc ? metalc46 F OD1 ASP 133 F ASP 133 1_555 Q CA CA . F CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc47 F O GLN 135 F GLN 135 1_555 Q CA CA . F CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc48 F OE1 GLU 140 F GLU 140 1_555 Q CA CA . F CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.394 ? 
metalc ? metalc49 F OE2 GLU 140 F GLU 140 1_555 Q CA CA . F CA 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
#
_chem_comp.formula           'C11 H18 N5 O12 P3' 
_chem_comp.formula_weight    505.208 
_chem_comp.id                APC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G APC doub 13 n n 
PG O2G APC sing 14 n n 
PG O3G APC sing 15 n n 
PG O3B APC sing 16 n n 
O2G HOG2 APC sing 17 n n 
O3G HOG3 APC sing 18 n n 
PB O1B APC doub 19 n n 
PB O2B APC sing 20 n n 
PB O3B APC sing 21 n n 
PB C3A APC sing 22 n n 
O2B HOB2 APC sing 23 n n 
PA O1A APC doub 24 n n 
PA O2A APC sing 25 n n 
PA C3A APC sing 26 n n 
PA O5' APC sing 27 n n 
O2A HOA2 APC sing 28 n n 
C3A H3A1 APC sing 29 n n 
C3A H3A2 APC sing 30 n n 
O5' C5' APC sing 31 n n 
C5' C4' APC sing 32 n n 
C5' "H5'1" APC sing 33 n n 
C5' "H5'2" APC sing 34 n n 
C4' O4' APC sing 35 n n 
C4' C3' APC sing 36 n n 
C4' H4' APC sing 37 n n 
O4' C1' APC sing 38 n n 
C3' O3' APC sing 39 n n 
C3' C2' APC sing 40 n n 
C3' H3' APC sing 41 n n 
O3' HO3' APC sing 42 n n 
C2' O2' APC sing 43 n n 
C2' C1' APC sing 44 n n 
C2' H2' APC sing 45 n n 
O2' HO2' APC sing 46 n n 
C1' N9 APC sing 47 n n 
C1' H1' APC sing 48 n n 
N9 C8 APC sing 49 n y 
N9 C4 APC sing 50 n y 
C8 N7 APC doub 51 n y 
C8 H8 APC sing 52 n n 
N7 C5 APC sing 53 n y 
C5 C6 APC sing 54 n y 
C5 C4 APC doub 55 n y 
C6 N6 APC sing 56 n n 
C6 N1 APC doub 57 n y 
N6 HN61 APC sing 58 n n 
N6 HN62 APC sing 59 n n 
N1 C2 APC sing 60 n y 
C2 N3 APC doub 61 n y 
C2 H2 APC sing 62 n n 
N3 C4 APC sing 63 n y 
#
_atom_sites.entry_id                     1S26 
_atom_sites.fract_transf_matrix[1][1]    0.008507 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005966 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 YB A 1 901 901 YB YB . 
H 4 APC A 1 1139 1139 APC APC . 
I 3 YB B 1 902 902 YB YB . 
J 4 APC B 1 2139 2139 APC APC . 
K 3 YB C 1 903 903 YB YB . 
L 4 APC C 1 3139 3139 APC APC . 
M 5 CA D 1 800 800 CA CA . 
N 5 CA D 1 801 801 CA CA . 
O 5 CA E 1 802 802 CA CA . 
P 5 CA E 1 803 803 CA CA . 
Q 5 CA F 1 804 804 CA CA . 
R 5 CA F 1 805 805 CA CA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG APC . . . H 4 31.497 73.417 44.792 1 55.74 ? PG APC 1139 A 1 
HETATM 2 O O1G APC . . . H 4 31.757 74.866 44.625 1 53.33 ? O1G APC 1139 A 1 
HETATM 3 O O2G APC . . . H 4 30.067 73.165 44.742 1 62.14 ? O2G APC 1139 A 1 
HETATM 4 O O3G APC . . . H 4 32.027 72.932 46.197 1 57.91 ? O3G APC 1139 A 1 
HETATM 5 P PB APC . . . H 4 33.669 71.92 43.435 1 76.01 ? PB APC 1139 A 1 
HETATM 6 O O1B APC . . . H 4 33.893 71.541 41.996 1 75.36 ? O1B APC 1139 A 1 
HETATM 7 O O2B APC . . . H 4 34.735 72.877 43.855 1 75.25 ? O2B APC 1139 A 1 
HETATM 8 O O3B APC . . . H 4 32.173 72.587 43.597 1 66.91 ? O3B APC 1139 A 1 
HETATM 9 P PA APC . . . H 4 34.139 68.766 43.993 1 85.59 ? PA APC 1139 A 1 
HETATM 10 O O1A APC . . . H 4 35.32 68.277 44.771 1 85.74 ? O1A APC 1139 A 1 
HETATM 11 O O2A APC . . . H 4 32.975 67.881 44.366 1 88.03 ? O2A APC 1139 A 1 
HETATM 12 C C3A APC . . . H 4 33.731 70.453 44.521 1 80.89 ? C3A APC 1139 A 1 
HETATM 13 O O5' APC . . . H 4 34.451 68.655 42.424 1 89.22 ? O5' APC 1139 A 1 
HETATM 14 C C5' APC . . . H 4 34.104 67.4 41.783 1 97.59 ? C5' APC 1139 A 1 
HETATM 15 C C4' APC . . . H 4 35.152 66.329 42.054 1 103.73 ? C4' APC 1139 A 1 
HETATM 16 O O4' APC . . . H 4 34.657 65.576 43.2 1 106.89 ? O4' APC 1139 A 1 
HETATM 17 C C3' APC . . . H 4 35.392 65.313 40.915 1 106.26 ? C3' APC 1139 A 1 
HETATM 18 O O3' APC . . . H 4 36.773 65.325 40.412 1 105.16 ? O3' APC 1139 A 1 
HETATM 19 C C2' APC . . . H 4 34.927 63.963 41.507 1 108.15 ? C2' APC 1139 A 1 
HETATM 20 O O2' APC . . . H 4 35.972 62.973 41.496 1 107.26 ? O2' APC 1139 A 1 
HETATM 21 C C1' APC . . . H 4 34.533 64.221 42.944 1 110.37 ? C1' APC 1139 A 1 
HETATM 22 N N9 APC . . . H 4 33.159 63.822 43.37 1 114.69 ? N9 APC 1139 A 1 
HETATM 23 C C8 APC . . . H 4 32.012 64.609 43.391 1 116.02 ? C8 APC 1139 A 1 
HETATM 24 N N7 APC . . . H 4 30.931 63.989 43.841 1 117.01 ? N7 APC 1139 A 1 
HETATM 25 C C5 APC . . . H 4 31.373 62.684 44.145 1 117.87 ? C5 APC 1139 A 1 
HETATM 26 C C6 APC . . . H 4 30.683 61.531 44.685 1 118.64 ? C6 APC 1139 A 1 
HETATM 27 N N6 APC . . . H 4 29.503 61.47 44.985 1 119.11 ? N6 APC 1139 A 1 
HETATM 28 N N1 APC . . . H 4 31.535 60.462 44.818 1 118.81 ? N1 APC 1139 A 1 
HETATM 29 C C2 APC . . . H 4 32.887 60.412 44.512 1 118.29 ? C2 APC 1139 A 1 
HETATM 30 N N3 APC . . . H 4 33.524 61.437 44.032 1 117.82 ? N3 APC 1139 A 1 
HETATM 31 C C4 APC . . . H 4 32.741 62.566 43.865 1 117.19 ? C4 APC 1139 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           31 
#