data_1S3P # _model_server_result.job_id OLZdJOqE-32Q7TfshV6aXg _model_server_result.datetime_utc '2024-12-14 22:21:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s3p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":210}' # _entry.id 1S3P # _exptl.entry_id 1S3P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S3P _cell.length_a 61.47 _cell.length_b 51.57 _cell.length_c 30.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S3P _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 51 A ASP 51 1_555 B CA CA . A CA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A OD2 ASP 53 A ASP 53 1_555 B CA CA . A CA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc3 A OD2 ASP 55 A ASP 55 1_555 B CA CA . A CA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc4 A O PHE 57 A PHE 57 1_555 B CA CA . A CA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc5 A OE1 GLU 62 A GLU 62 1_555 B CA CA . A CA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc6 A OE2 GLU 62 A GLU 62 1_555 B CA CA . A CA 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc7 A OD1 ASP 90 A ASP 90 1_555 C CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc8 A OD1 ASP 92 A ASP 92 1_555 C CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc9 A OD1 ASP 94 A ASP 94 1_555 C CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc10 A O LYS 96 A LYS 96 1_555 C CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc11 A OE1 GLU 101 A GLU 101 1_555 C CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc12 A OE2 GLU 101 A GLU 101 1_555 C CA CA . A CA 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc13 B CA CA . A CA 210 1_555 E O HOH . A HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc14 C CA CA . A CA 211 1_555 E O HOH . A HOH 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1S3P _atom_sites.fract_transf_matrix[1][1] 0.016268 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.03252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 210 110 CA CA . C 2 CA A 1 211 111 CA CA . D 3 SO4 A 1 302 302 SO4 SO4 . E 4 HOH A 1 303 1 HOH HOH . E 4 HOH A 2 304 2 HOH HOH . E 4 HOH A 3 305 3 HOH HOH . E 4 HOH A 4 306 4 HOH HOH . E 4 HOH A 5 307 5 HOH HOH . E 4 HOH A 6 308 6 HOH HOH . E 4 HOH A 7 309 7 HOH HOH . E 4 HOH A 8 310 8 HOH HOH . E 4 HOH A 9 311 9 HOH HOH . E 4 HOH A 10 312 10 HOH HOH . E 4 HOH A 11 313 11 HOH HOH . E 4 HOH A 12 314 12 HOH HOH . E 4 HOH A 13 315 13 HOH HOH . E 4 HOH A 14 316 14 HOH HOH . E 4 HOH A 15 317 15 HOH HOH . E 4 HOH A 16 318 16 HOH HOH . E 4 HOH A 17 319 17 HOH HOH . E 4 HOH A 18 320 18 HOH HOH . E 4 HOH A 19 321 19 HOH HOH . E 4 HOH A 20 322 20 HOH HOH . E 4 HOH A 21 323 21 HOH HOH . E 4 HOH A 22 324 22 HOH HOH . E 4 HOH A 23 325 23 HOH HOH . E 4 HOH A 24 326 24 HOH HOH . E 4 HOH A 25 327 25 HOH HOH . E 4 HOH A 26 328 26 HOH HOH . E 4 HOH A 27 329 27 HOH HOH . E 4 HOH A 28 330 28 HOH HOH . E 4 HOH A 29 331 29 HOH HOH . E 4 HOH A 30 332 30 HOH HOH . E 4 HOH A 31 333 31 HOH HOH . E 4 HOH A 32 334 32 HOH HOH . E 4 HOH A 33 335 33 HOH HOH . E 4 HOH A 34 336 34 HOH HOH . E 4 HOH A 35 337 35 HOH HOH . E 4 HOH A 36 338 36 HOH HOH . E 4 HOH A 37 339 37 HOH HOH . E 4 HOH A 38 340 38 HOH HOH . E 4 HOH A 39 341 39 HOH HOH . E 4 HOH A 40 342 40 HOH HOH . E 4 HOH A 41 343 41 HOH HOH . E 4 HOH A 42 344 42 HOH HOH . E 4 HOH A 43 345 43 HOH HOH . E 4 HOH A 44 346 44 HOH HOH . E 4 HOH A 45 347 45 HOH HOH . E 4 HOH A 46 348 46 HOH HOH . E 4 HOH A 47 349 47 HOH HOH . E 4 HOH A 48 350 48 HOH HOH . E 4 HOH A 49 351 49 HOH HOH . E 4 HOH A 50 352 50 HOH HOH . E 4 HOH A 51 353 51 HOH HOH . E 4 HOH A 52 354 52 HOH HOH . E 4 HOH A 53 355 53 HOH HOH . E 4 HOH A 54 356 54 HOH HOH . E 4 HOH A 55 357 56 HOH HOH . E 4 HOH A 56 358 57 HOH HOH . E 4 HOH A 57 359 58 HOH HOH . E 4 HOH A 58 360 59 HOH HOH . E 4 HOH A 59 361 60 HOH HOH . E 4 HOH A 60 362 61 HOH HOH . E 4 HOH A 61 363 62 HOH HOH . E 4 HOH A 62 364 63 HOH HOH . E 4 HOH A 63 365 65 HOH HOH . E 4 HOH A 64 366 66 HOH HOH . E 4 HOH A 65 367 67 HOH HOH . E 4 HOH A 66 368 68 HOH HOH . E 4 HOH A 67 369 69 HOH HOH . E 4 HOH A 68 370 70 HOH HOH . E 4 HOH A 69 371 71 HOH HOH . E 4 HOH A 70 372 72 HOH HOH . E 4 HOH A 71 373 73 HOH HOH . E 4 HOH A 72 374 74 HOH HOH . E 4 HOH A 73 375 75 HOH HOH . E 4 HOH A 74 376 76 HOH HOH . E 4 HOH A 75 377 77 HOH HOH . E 4 HOH A 76 378 78 HOH HOH . E 4 HOH A 77 379 79 HOH HOH . E 4 HOH A 78 380 80 HOH HOH . E 4 HOH A 79 381 81 HOH HOH . E 4 HOH A 80 382 82 HOH HOH . E 4 HOH A 81 383 83 HOH HOH . E 4 HOH A 82 384 84 HOH HOH . E 4 HOH A 83 385 85 HOH HOH . E 4 HOH A 84 386 86 HOH HOH . E 4 HOH A 85 387 87 HOH HOH . E 4 HOH A 86 388 88 HOH HOH . E 4 HOH A 87 389 89 HOH HOH . E 4 HOH A 88 390 90 HOH HOH . E 4 HOH A 89 391 91 HOH HOH . E 4 HOH A 90 392 92 HOH HOH . E 4 HOH A 91 393 93 HOH HOH . E 4 HOH A 92 394 94 HOH HOH . E 4 HOH A 93 395 95 HOH HOH . E 4 HOH A 94 396 96 HOH HOH . E 4 HOH A 95 397 97 HOH HOH . E 4 HOH A 96 398 98 HOH HOH . E 4 HOH A 97 399 99 HOH HOH . E 4 HOH A 98 400 100 HOH HOH . E 4 HOH A 99 401 101 HOH HOH . E 4 HOH A 100 402 102 HOH HOH . E 4 HOH A 101 403 103 HOH HOH . E 4 HOH A 102 404 104 HOH HOH . E 4 HOH A 103 405 105 HOH HOH . E 4 HOH A 104 406 106 HOH HOH . E 4 HOH A 105 407 107 HOH HOH . E 4 HOH A 106 408 108 HOH HOH . E 4 HOH A 107 409 109 HOH HOH . E 4 HOH A 108 410 110 HOH HOH . E 4 HOH A 109 411 111 HOH HOH . E 4 HOH A 110 412 112 HOH HOH . E 4 HOH A 111 413 113 HOH HOH . E 4 HOH A 112 414 114 HOH HOH . E 4 HOH A 113 415 115 HOH HOH . E 4 HOH A 114 416 116 HOH HOH . E 4 HOH A 115 417 117 HOH HOH . E 4 HOH A 116 418 118 HOH HOH . E 4 HOH A 117 419 119 HOH HOH . E 4 HOH A 118 420 120 HOH HOH . E 4 HOH A 119 421 121 HOH HOH . E 4 HOH A 120 422 122 HOH HOH . E 4 HOH A 121 423 123 HOH HOH . E 4 HOH A 122 424 124 HOH HOH . E 4 HOH A 123 425 125 HOH HOH . E 4 HOH A 124 426 126 HOH HOH . E 4 HOH A 125 427 127 HOH HOH . E 4 HOH A 126 428 128 HOH HOH . E 4 HOH A 127 429 129 HOH HOH . E 4 HOH A 128 430 130 HOH HOH . E 4 HOH A 129 431 131 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 12.535 _atom_site.Cartn_y 20.41 _atom_site.Cartn_z 9.329 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.68 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 210 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #