data_1S3W # _model_server_result.job_id gwP7oj2cjsnVHBD2ZuwYPA _model_server_result.datetime_utc '2024-10-20 19:57:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":187}' # _entry.id 1S3W # _exptl.entry_id 1S3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1S3W _cell.length_a 86.981 _cell.length_b 86.981 _cell.length_c 76.855 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1S3W _atom_sites.fract_transf_matrix[1][1] 0.011497 _atom_sites.fract_transf_matrix[1][2] 0.006638 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013275 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013012 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 187 187 NAP COE . C 3 TQT A 1 188 187 TQT COE . D 4 HOH A 1 189 189 HOH HOH . D 4 HOH A 2 190 190 HOH HOH . D 4 HOH A 3 191 191 HOH HOH . D 4 HOH A 4 192 192 HOH HOH . D 4 HOH A 5 193 193 HOH HOH . D 4 HOH A 6 194 194 HOH HOH . D 4 HOH A 7 195 195 HOH HOH . D 4 HOH A 8 196 196 HOH HOH . D 4 HOH A 9 197 197 HOH HOH . D 4 HOH A 10 198 198 HOH HOH . D 4 HOH A 11 199 199 HOH HOH . D 4 HOH A 12 200 200 HOH HOH . D 4 HOH A 13 201 201 HOH HOH . D 4 HOH A 14 202 202 HOH HOH . D 4 HOH A 15 203 203 HOH HOH . D 4 HOH A 16 204 204 HOH HOH . D 4 HOH A 17 205 205 HOH HOH . D 4 HOH A 18 206 206 HOH HOH . D 4 HOH A 19 207 207 HOH HOH . D 4 HOH A 20 208 208 HOH HOH . D 4 HOH A 21 209 209 HOH HOH . D 4 HOH A 22 210 210 HOH HOH . D 4 HOH A 23 211 211 HOH HOH . D 4 HOH A 24 212 212 HOH HOH . D 4 HOH A 25 213 213 HOH HOH . D 4 HOH A 26 214 214 HOH HOH . D 4 HOH A 27 215 215 HOH HOH . D 4 HOH A 28 216 216 HOH HOH . D 4 HOH A 29 217 217 HOH HOH . D 4 HOH A 30 218 218 HOH HOH . D 4 HOH A 31 219 219 HOH HOH . D 4 HOH A 32 220 220 HOH HOH . D 4 HOH A 33 221 221 HOH HOH . D 4 HOH A 34 222 222 HOH HOH . D 4 HOH A 35 223 223 HOH HOH . D 4 HOH A 36 224 224 HOH HOH . D 4 HOH A 37 225 225 HOH HOH . D 4 HOH A 38 226 226 HOH HOH . D 4 HOH A 39 227 227 HOH HOH . D 4 HOH A 40 228 228 HOH HOH . D 4 HOH A 41 229 229 HOH HOH . D 4 HOH A 42 230 230 HOH HOH . D 4 HOH A 43 231 231 HOH HOH . D 4 HOH A 44 232 232 HOH HOH . D 4 HOH A 45 233 233 HOH HOH . D 4 HOH A 46 234 234 HOH HOH . D 4 HOH A 47 235 235 HOH HOH . D 4 HOH A 48 236 236 HOH HOH . D 4 HOH A 49 237 237 HOH HOH . D 4 HOH A 50 238 238 HOH HOH . D 4 HOH A 51 239 239 HOH HOH . D 4 HOH A 52 240 240 HOH HOH . D 4 HOH A 53 241 241 HOH HOH . D 4 HOH A 54 242 242 HOH HOH . D 4 HOH A 55 243 243 HOH HOH . D 4 HOH A 56 244 244 HOH HOH . D 4 HOH A 57 245 245 HOH HOH . D 4 HOH A 58 246 246 HOH HOH . D 4 HOH A 59 247 247 HOH HOH . D 4 HOH A 60 248 248 HOH HOH . D 4 HOH A 61 249 249 HOH HOH . D 4 HOH A 62 250 250 HOH HOH . D 4 HOH A 63 251 251 HOH HOH . D 4 HOH A 64 252 252 HOH HOH . D 4 HOH A 65 253 253 HOH HOH . D 4 HOH A 66 254 254 HOH HOH . D 4 HOH A 67 255 255 HOH HOH . D 4 HOH A 68 256 256 HOH HOH . D 4 HOH A 69 257 257 HOH HOH . D 4 HOH A 70 258 258 HOH HOH . D 4 HOH A 71 259 259 HOH HOH . D 4 HOH A 72 260 260 HOH HOH . D 4 HOH A 73 261 261 HOH HOH . D 4 HOH A 74 262 262 HOH HOH . D 4 HOH A 75 263 263 HOH HOH . D 4 HOH A 76 264 264 HOH HOH . D 4 HOH A 77 265 265 HOH HOH . D 4 HOH A 78 266 266 HOH HOH . D 4 HOH A 79 267 267 HOH HOH . D 4 HOH A 80 268 268 HOH HOH . D 4 HOH A 81 269 269 HOH HOH . D 4 HOH A 82 270 188 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 26.583 8.575 8.646 1 24.94 ? PA NAP 187 A 1 HETATM 2 O O1A NAP . . . B 2 27.002 9.869 8.134 1 24.68 ? O1A NAP 187 A 1 HETATM 3 O O2A NAP . . . B 2 25.365 7.9 8.346 1 24.74 ? O2A NAP 187 A 1 HETATM 4 O O5B NAP . . . B 2 26.844 8.728 10.299 1 24.29 ? O5B NAP 187 A 1 HETATM 5 C C5B NAP . . . B 2 26.179 7.65 11.069 1 26.71 ? C5B NAP 187 A 1 HETATM 6 C C4B NAP . . . B 2 25.959 8.428 12.446 1 29.2 ? C4B NAP 187 A 1 HETATM 7 O O4B NAP . . . B 2 25.045 9.237 12.132 1 30.55 ? O4B NAP 187 A 1 HETATM 8 C C3B NAP . . . B 2 25.332 7.34 13.449 1 28.95 ? C3B NAP 187 A 1 HETATM 9 O O3B NAP . . . B 2 26.496 6.934 14.331 1 31.47 ? O3B NAP 187 A 1 HETATM 10 C C2B NAP . . . B 2 24.381 8.337 14.164 1 30 ? C2B NAP 187 A 1 HETATM 11 O O2B NAP . . . B 2 24.993 9.274 14.988 1 29.37 ? O2B NAP 187 A 1 HETATM 12 C C1B NAP . . . B 2 23.904 9.274 13.01 1 31.7 ? C1B NAP 187 A 1 HETATM 13 N N9A NAP . . . B 2 22.728 8.824 12.338 1 35.72 ? N9A NAP 187 A 1 HETATM 14 C C8A NAP . . . B 2 22.745 8.24 11.139 1 38.09 ? C8A NAP 187 A 1 HETATM 15 N N7A NAP . . . B 2 21.566 7.852 10.74 1 37.66 ? N7A NAP 187 A 1 HETATM 16 C C5A NAP . . . B 2 20.752 8.336 11.792 1 38.95 ? C5A NAP 187 A 1 HETATM 17 C C6A NAP . . . B 2 19.23 8.334 12.049 1 40.83 ? C6A NAP 187 A 1 HETATM 18 N N6A NAP . . . B 2 18.407 7.797 11.146 1 45.83 ? N6A NAP 187 A 1 HETATM 19 N N1A NAP . . . B 2 18.811 8.895 13.198 1 43.56 ? N1A NAP 187 A 1 HETATM 20 C C2A NAP . . . B 2 19.743 9.38 14.012 1 41.5 ? C2A NAP 187 A 1 HETATM 21 N N3A NAP . . . B 2 21.059 9.421 13.912 1 41.63 ? N3A NAP 187 A 1 HETATM 22 C C4A NAP . . . B 2 21.492 8.861 12.741 1 38.35 ? C4A NAP 187 A 1 HETATM 23 O O3 NAP . . . B 2 27.83 7.646 8.413 1 27.51 ? O3 NAP 187 A 1 HETATM 24 P PN NAP . . . B 2 28.291 6.368 7.497 1 28.5 ? PN NAP 187 A 1 HETATM 25 O O1N NAP . . . B 2 27.238 5.555 7.04 1 31.97 ? O1N NAP 187 A 1 HETATM 26 O O2N NAP . . . B 2 29.227 5.755 8.39 1 30.96 ? O2N NAP 187 A 1 HETATM 27 O O5D NAP . . . B 2 29.077 7.06 6.339 1 29.74 ? O5D NAP 187 A 1 HETATM 28 C C5D NAP . . . B 2 29.984 8.141 6.274 1 30.57 ? C5D NAP 187 A 1 HETATM 29 C C4D NAP . . . B 2 30.856 7.552 5.155 1 29.58 ? C4D NAP 187 A 1 HETATM 30 O O4D NAP . . . B 2 30.442 7.601 3.726 1 29.99 ? O4D NAP 187 A 1 HETATM 31 C C3D NAP . . . B 2 32.137 8.403 5.222 1 29.06 ? C3D NAP 187 A 1 HETATM 32 O O3D NAP . . . B 2 33.178 7.626 4.639 1 27.53 ? O3D NAP 187 A 1 HETATM 33 C C2D NAP . . . B 2 31.878 9.518 4.171 1 29.05 ? C2D NAP 187 A 1 HETATM 34 O O2D NAP . . . B 2 33.152 9.809 3.741 1 27.36 ? O2D NAP 187 A 1 HETATM 35 C C1D NAP . . . B 2 31.247 8.677 3.055 1 28.99 ? C1D NAP 187 A 1 HETATM 36 N N1N NAP . . . B 2 30.173 9.363 2.233 1 28.14 ? N1N NAP 187 A 1 HETATM 37 C C2N NAP . . . B 2 30.225 9.118 0.8 1 27.24 ? C2N NAP 187 A 1 HETATM 38 C C3N NAP . . . B 2 29.26 9.655 0.07 1 28.54 ? C3N NAP 187 A 1 HETATM 39 C C7N NAP . . . B 2 29.3 9.375 -1.43 1 26.76 ? C7N NAP 187 A 1 HETATM 40 O O7N NAP . . . B 2 28.365 9.854 -1.965 1 24.88 ? O7N NAP 187 A 1 HETATM 41 N N7N NAP . . . B 2 30.299 8.652 -1.94 1 25.29 ? N7N NAP 187 A 1 HETATM 42 C C4N NAP . . . B 2 28.024 10.4 0.629 1 26.92 ? C4N NAP 187 A 1 HETATM 43 C C5N NAP . . . B 2 28.12 10.529 2.146 1 28.57 ? C5N NAP 187 A 1 HETATM 44 C C6N NAP . . . B 2 29.099 9.998 2.878 1 28.24 ? C6N NAP 187 A 1 HETATM 45 P P2B NAP . . . B 2 25.062 9.015 16.73 1 28.39 ? P2B NAP 187 A 1 HETATM 46 O O1X NAP . . . B 2 23.712 8.764 17.189 1 25.85 ? O1X NAP 187 A 1 HETATM 47 O O2X NAP . . . B 2 25.83 10.254 17.083 1 27.84 ? O2X NAP 187 A 1 HETATM 48 O O3X NAP . . . B 2 25.906 7.819 16.747 1 28.24 ? O3X NAP 187 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #