data_1S3Y
#
_model_server_result.job_id            YthJgTWcsaMhcgh7Hgp6gQ 
_model_server_result.datetime_utc      '2024-11-27 03:13:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1s3y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":207}' 
#
_entry.id    1S3Y 
#
_exptl.entry_id    1S3Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          94.65 
_cell.angle_gamma         90 
_cell.entry_id            1S3Y 
_cell.length_a            37.359 
_cell.length_b            43.286 
_cell.length_c            61.397 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1S3Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 237 n n 
PA O2A NAP sing 238 n n 
PA O5B NAP sing 239 n n 
PA O3 NAP sing 240 n n 
O2A HOA2 NAP sing 241 n n 
O5B C5B NAP sing 242 n n 
C5B C4B NAP sing 243 n n 
C5B H51A NAP sing 244 n n 
C5B H52A NAP sing 245 n n 
C4B O4B NAP sing 246 n n 
C4B C3B NAP sing 247 n n 
C4B H4B NAP sing 248 n n 
O4B C1B NAP sing 249 n n 
C3B O3B NAP sing 250 n n 
C3B C2B NAP sing 251 n n 
C3B H3B NAP sing 252 n n 
O3B HO3A NAP sing 253 n n 
C2B O2B NAP sing 254 n n 
C2B C1B NAP sing 255 n n 
C2B H2B NAP sing 256 n n 
O2B P2B NAP sing 257 n n 
C1B N9A NAP sing 258 n n 
C1B H1B NAP sing 259 n n 
N9A C8A NAP sing 260 n y 
N9A C4A NAP sing 261 n y 
C8A N7A NAP doub 262 n y 
C8A H8A NAP sing 263 n n 
N7A C5A NAP sing 264 n y 
C5A C6A NAP sing 265 n y 
C5A C4A NAP doub 266 n y 
C6A N6A NAP sing 267 n n 
C6A N1A NAP doub 268 n y 
N6A H61A NAP sing 269 n n 
N6A H62A NAP sing 270 n n 
N1A C2A NAP sing 271 n y 
C2A N3A NAP doub 272 n y 
C2A H2A NAP sing 273 n n 
N3A C4A NAP sing 274 n y 
O3 PN NAP sing 275 n n 
PN O1N NAP doub 276 n n 
PN O2N NAP sing 277 n n 
PN O5D NAP sing 278 n n 
O5D C5D NAP sing 279 n n 
C5D C4D NAP sing 280 n n 
C5D H51N NAP sing 281 n n 
C5D H52N NAP sing 282 n n 
C4D O4D NAP sing 283 n n 
C4D C3D NAP sing 284 n n 
C4D H4D NAP sing 285 n n 
O4D C1D NAP sing 286 n n 
C3D O3D NAP sing 287 n n 
C3D C2D NAP sing 288 n n 
C3D H3D NAP sing 289 n n 
O3D HO3N NAP sing 290 n n 
C2D O2D NAP sing 291 n n 
C2D C1D NAP sing 292 n n 
C2D H2D NAP sing 293 n n 
O2D HO2N NAP sing 294 n n 
C1D N1N NAP sing 295 n n 
C1D H1D NAP sing 296 n n 
N1N C2N NAP sing 297 n y 
N1N C6N NAP doub 298 n y 
C2N C3N NAP doub 299 n y 
C2N H2N NAP sing 300 n n 
C3N C7N NAP sing 301 n n 
C3N C4N NAP sing 302 n y 
C7N O7N NAP doub 303 n n 
C7N N7N NAP sing 304 n n 
N7N H71N NAP sing 305 n n 
N7N H72N NAP sing 306 n n 
C4N C5N NAP doub 307 n y 
C4N H4N NAP sing 308 n n 
C5N C6N NAP sing 309 n y 
C5N H5N NAP sing 310 n n 
C6N H6N NAP sing 311 n n 
P2B O1X NAP doub 312 n n 
P2B O2X NAP sing 313 n n 
P2B O3X NAP sing 314 n n 
O2X HOP2 NAP sing 315 n n 
O3X HOP3 NAP sing 316 n n 
#
_atom_sites.entry_id                     1S3Y 
_atom_sites.fract_transf_matrix[1][1]    0.026767 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002177 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023102 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016341 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NAP A 1 207 207 NAP COE . 
C 3 TQT A 1 208 208 TQT THI . 
D 4 HOH A 1 209 1 HOH HOH . 
D 4 HOH A 2 210 2 HOH HOH . 
D 4 HOH A 3 211 3 HOH HOH . 
D 4 HOH A 4 212 4 HOH HOH . 
D 4 HOH A 5 213 5 HOH HOH . 
D 4 HOH A 6 214 6 HOH HOH . 
D 4 HOH A 7 215 7 HOH HOH . 
D 4 HOH A 8 216 8 HOH HOH . 
D 4 HOH A 9 217 9 HOH HOH . 
D 4 HOH A 10 218 10 HOH HOH . 
D 4 HOH A 11 219 11 HOH HOH . 
D 4 HOH A 12 220 12 HOH HOH . 
D 4 HOH A 13 221 13 HOH HOH . 
D 4 HOH A 14 222 14 HOH HOH . 
D 4 HOH A 15 223 15 HOH HOH . 
D 4 HOH A 16 224 16 HOH HOH . 
D 4 HOH A 17 225 17 HOH HOH . 
D 4 HOH A 18 226 18 HOH HOH . 
D 4 HOH A 19 227 19 HOH HOH . 
D 4 HOH A 20 228 20 HOH HOH . 
D 4 HOH A 21 229 21 HOH HOH . 
D 4 HOH A 22 230 22 HOH HOH . 
D 4 HOH A 23 231 23 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . B 2 15.885 10.422 22.854 0.5 25.19 ? PA NAP 207 A 1 
HETATM 2 O O1A NAP . . . B 2 15.762 10.693 21.46 0.5 23.12 ? O1A NAP 207 A 1 
HETATM 3 O O2A NAP . . . B 2 14.768 10.125 23.718 0.5 22.55 ? O2A NAP 207 A 1 
HETATM 4 O O5B NAP . . . B 2 16.814 11.674 23.465 0.5 25.44 ? O5B NAP 207 A 1 
HETATM 5 C C5B NAP . . . B 2 17.094 11.606 24.943 0.5 24.45 ? C5B NAP 207 A 1 
HETATM 6 C C4B NAP . . . B 2 16.945 13.165 25.234 0.5 25.79 ? C4B NAP 207 A 1 
HETATM 7 O O4B NAP . . . B 2 15.714 13.424 25.019 0.5 25.25 ? O4B NAP 207 A 1 
HETATM 8 C C3B NAP . . . B 2 17.215 13.44 26.841 0.5 25.36 ? C3B NAP 207 A 1 
HETATM 9 O O3B NAP . . . B 2 18.716 13.635 26.951 0.5 26.81 ? O3B NAP 207 A 1 
HETATM 10 C C2B NAP . . . B 2 16.23 14.618 26.891 0.5 26.22 ? C2B NAP 207 A 1 
HETATM 11 O O2B NAP . . . B 2 16.797 15.829 26.461 0.5 26 ? O2B NAP 207 A 1 
HETATM 12 C C1B NAP . . . B 2 15.057 14.32 25.945 0.5 25.5 ? C1B NAP 207 A 1 
HETATM 13 N N9A NAP . . . B 2 13.867 13.797 26.619 0.5 26.44 ? N9A NAP 207 A 1 
HETATM 14 C C8A NAP . . . B 2 13.351 12.553 26.422 0.5 25.71 ? C8A NAP 207 A 1 
HETATM 15 N N7A NAP . . . B 2 12.3 12.279 27.109 0.5 24.12 ? N7A NAP 207 A 1 
HETATM 16 C C5A NAP . . . B 2 12.126 13.476 27.808 0.5 25.98 ? C5A NAP 207 A 1 
HETATM 17 C C6A NAP . . . B 2 11.08 13.97 28.861 0.5 26.16 ? C6A NAP 207 A 1 
HETATM 18 N N6A NAP . . . B 2 10.108 13.125 29.203 0.5 27.95 ? N6A NAP 207 A 1 
HETATM 19 N N1A NAP . . . B 2 11.211 15.274 29.382 0.5 25.69 ? N1A NAP 207 A 1 
HETATM 20 C C2A NAP . . . B 2 12.263 16.045 28.945 0.5 25.34 ? C2A NAP 207 A 1 
HETATM 21 N N3A NAP . . . B 2 13.223 15.709 28.038 0.5 25.6 ? N3A NAP 207 A 1 
HETATM 22 C C4A NAP . . . B 2 13.076 14.372 27.509 0.5 25.96 ? C4A NAP 207 A 1 
HETATM 23 O O3 NAP . . . B 2 17.062 9.376 23.042 0.5 27.71 ? O3 NAP 207 A 1 
HETATM 24 P PN NAP . . . B 2 17.48 8.019 23.885 0.5 29.83 ? PN NAP 207 A 1 
HETATM 25 O O1N NAP . . . B 2 16.532 7.504 24.777 0.5 29.85 ? O1N NAP 207 A 1 
HETATM 26 O O2N NAP . . . B 2 18.637 8.533 24.564 0.5 31.22 ? O2N NAP 207 A 1 
HETATM 27 O O5D NAP . . . B 2 18.066 7.017 22.848 0.5 29.86 ? O5D NAP 207 A 1 
HETATM 28 C C5D NAP . . . B 2 19.048 7.271 21.82 0.5 29.04 ? C5D NAP 207 A 1 
HETATM 29 C C4D NAP . . . B 2 19.545 6.235 20.946 0 26.41 ? C4D NAP 207 A 1 
HETATM 30 O O4D NAP . . . B 2 18.595 5.511 20.009 0 25.52 ? O4D NAP 207 A 1 
HETATM 31 C C3D NAP . . . B 2 20.598 6.91 20.07 0 25.56 ? C3D NAP 207 A 1 
HETATM 32 O O3D NAP . . . B 2 21.905 6.394 20.416 0 25.12 ? O3D NAP 207 A 1 
HETATM 33 C C2D NAP . . . B 2 20.331 6.583 18.572 0 24.85 ? C2D NAP 207 A 1 
HETATM 34 O O2D NAP . . . B 2 21.355 5.907 17.93 0 24.56 ? O2D NAP 207 A 1 
HETATM 35 C C1D NAP . . . B 2 19.07 5.701 18.583 0 24.5 ? C1D NAP 207 A 1 
HETATM 36 N N1N NAP . . . B 2 17.836 6 17.715 0 23.71 ? N1N NAP 207 A 1 
HETATM 37 C C2N NAP . . . B 2 17.507 4.88 16.749 0 23.21 ? C2N NAP 207 A 1 
HETATM 38 C C3N NAP . . . B 2 16.438 5.029 15.928 0 22.85 ? C3N NAP 207 A 1 
HETATM 39 C C7N NAP . . . B 2 16.146 3.823 14.935 0 22.65 ? C7N NAP 207 A 1 
HETATM 40 O O7N NAP . . . B 2 15.219 4.004 14.252 0 22.53 ? O7N NAP 207 A 1 
HETATM 41 N N7N NAP . . . B 2 16.921 2.744 14.932 0 22.53 ? N7N NAP 207 A 1 
HETATM 42 C C4N NAP . . . B 2 15.518 6.339 15.948 0 22.93 ? C4N NAP 207 A 1 
HETATM 43 C C5N NAP . . . B 2 15.987 7.417 17.005 0 23.08 ? C5N NAP 207 A 1 
HETATM 44 C C6N NAP . . . B 2 17.124 7.162 17.814 0 23.35 ? C6N NAP 207 A 1 
HETATM 45 P P2B NAP . . . B 2 17.577 16.934 27.616 0.5 27.5 ? P2B NAP 207 A 1 
HETATM 46 O O1X NAP . . . B 2 16.613 17.175 28.651 0.5 28.14 ? O1X NAP 207 A 1 
HETATM 47 O O2X NAP . . . B 2 17.936 17.948 26.581 0.5 26.94 ? O2X NAP 207 A 1 
HETATM 48 O O3X NAP . . . B 2 18.73 16.129 28.03 0.5 26.51 ? O3X NAP 207 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           48 
#