data_1S3Y # _model_server_result.job_id -_pzBb24VXpCbSmWZPbLPQ _model_server_result.datetime_utc '2024-11-07 10:05:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 1S3Y # _exptl.entry_id 1S3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.65 _cell.angle_gamma 90 _cell.entry_id 1S3Y _cell.length_a 37.359 _cell.length_b 43.286 _cell.length_c 61.397 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 1S3Y _atom_sites.fract_transf_matrix[1][1] 0.026767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002177 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023102 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016341 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAP A 1 207 207 NAP COE . C 3 TQT A 1 208 208 TQT THI . D 4 HOH A 1 209 1 HOH HOH . D 4 HOH A 2 210 2 HOH HOH . D 4 HOH A 3 211 3 HOH HOH . D 4 HOH A 4 212 4 HOH HOH . D 4 HOH A 5 213 5 HOH HOH . D 4 HOH A 6 214 6 HOH HOH . D 4 HOH A 7 215 7 HOH HOH . D 4 HOH A 8 216 8 HOH HOH . D 4 HOH A 9 217 9 HOH HOH . D 4 HOH A 10 218 10 HOH HOH . D 4 HOH A 11 219 11 HOH HOH . D 4 HOH A 12 220 12 HOH HOH . D 4 HOH A 13 221 13 HOH HOH . D 4 HOH A 14 222 14 HOH HOH . D 4 HOH A 15 223 15 HOH HOH . D 4 HOH A 16 224 16 HOH HOH . D 4 HOH A 17 225 17 HOH HOH . D 4 HOH A 18 226 18 HOH HOH . D 4 HOH A 19 227 19 HOH HOH . D 4 HOH A 20 228 20 HOH HOH . D 4 HOH A 21 229 21 HOH HOH . D 4 HOH A 22 230 22 HOH HOH . D 4 HOH A 23 231 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . B 2 15.885 10.422 22.854 0.5 25.19 ? PA NAP 207 A 1 HETATM 2 O O1A NAP . . . B 2 15.762 10.693 21.46 0.5 23.12 ? O1A NAP 207 A 1 HETATM 3 O O2A NAP . . . B 2 14.768 10.125 23.718 0.5 22.55 ? O2A NAP 207 A 1 HETATM 4 O O5B NAP . . . B 2 16.814 11.674 23.465 0.5 25.44 ? O5B NAP 207 A 1 HETATM 5 C C5B NAP . . . B 2 17.094 11.606 24.943 0.5 24.45 ? C5B NAP 207 A 1 HETATM 6 C C4B NAP . . . B 2 16.945 13.165 25.234 0.5 25.79 ? C4B NAP 207 A 1 HETATM 7 O O4B NAP . . . B 2 15.714 13.424 25.019 0.5 25.25 ? O4B NAP 207 A 1 HETATM 8 C C3B NAP . . . B 2 17.215 13.44 26.841 0.5 25.36 ? C3B NAP 207 A 1 HETATM 9 O O3B NAP . . . B 2 18.716 13.635 26.951 0.5 26.81 ? O3B NAP 207 A 1 HETATM 10 C C2B NAP . . . B 2 16.23 14.618 26.891 0.5 26.22 ? C2B NAP 207 A 1 HETATM 11 O O2B NAP . . . B 2 16.797 15.829 26.461 0.5 26 ? O2B NAP 207 A 1 HETATM 12 C C1B NAP . . . B 2 15.057 14.32 25.945 0.5 25.5 ? C1B NAP 207 A 1 HETATM 13 N N9A NAP . . . B 2 13.867 13.797 26.619 0.5 26.44 ? N9A NAP 207 A 1 HETATM 14 C C8A NAP . . . B 2 13.351 12.553 26.422 0.5 25.71 ? C8A NAP 207 A 1 HETATM 15 N N7A NAP . . . B 2 12.3 12.279 27.109 0.5 24.12 ? N7A NAP 207 A 1 HETATM 16 C C5A NAP . . . B 2 12.126 13.476 27.808 0.5 25.98 ? C5A NAP 207 A 1 HETATM 17 C C6A NAP . . . B 2 11.08 13.97 28.861 0.5 26.16 ? C6A NAP 207 A 1 HETATM 18 N N6A NAP . . . B 2 10.108 13.125 29.203 0.5 27.95 ? N6A NAP 207 A 1 HETATM 19 N N1A NAP . . . B 2 11.211 15.274 29.382 0.5 25.69 ? N1A NAP 207 A 1 HETATM 20 C C2A NAP . . . B 2 12.263 16.045 28.945 0.5 25.34 ? C2A NAP 207 A 1 HETATM 21 N N3A NAP . . . B 2 13.223 15.709 28.038 0.5 25.6 ? N3A NAP 207 A 1 HETATM 22 C C4A NAP . . . B 2 13.076 14.372 27.509 0.5 25.96 ? C4A NAP 207 A 1 HETATM 23 O O3 NAP . . . B 2 17.062 9.376 23.042 0.5 27.71 ? O3 NAP 207 A 1 HETATM 24 P PN NAP . . . B 2 17.48 8.019 23.885 0.5 29.83 ? PN NAP 207 A 1 HETATM 25 O O1N NAP . . . B 2 16.532 7.504 24.777 0.5 29.85 ? O1N NAP 207 A 1 HETATM 26 O O2N NAP . . . B 2 18.637 8.533 24.564 0.5 31.22 ? O2N NAP 207 A 1 HETATM 27 O O5D NAP . . . B 2 18.066 7.017 22.848 0.5 29.86 ? O5D NAP 207 A 1 HETATM 28 C C5D NAP . . . B 2 19.048 7.271 21.82 0.5 29.04 ? C5D NAP 207 A 1 HETATM 29 C C4D NAP . . . B 2 19.545 6.235 20.946 0 26.41 ? C4D NAP 207 A 1 HETATM 30 O O4D NAP . . . B 2 18.595 5.511 20.009 0 25.52 ? O4D NAP 207 A 1 HETATM 31 C C3D NAP . . . B 2 20.598 6.91 20.07 0 25.56 ? C3D NAP 207 A 1 HETATM 32 O O3D NAP . . . B 2 21.905 6.394 20.416 0 25.12 ? O3D NAP 207 A 1 HETATM 33 C C2D NAP . . . B 2 20.331 6.583 18.572 0 24.85 ? C2D NAP 207 A 1 HETATM 34 O O2D NAP . . . B 2 21.355 5.907 17.93 0 24.56 ? O2D NAP 207 A 1 HETATM 35 C C1D NAP . . . B 2 19.07 5.701 18.583 0 24.5 ? C1D NAP 207 A 1 HETATM 36 N N1N NAP . . . B 2 17.836 6 17.715 0 23.71 ? N1N NAP 207 A 1 HETATM 37 C C2N NAP . . . B 2 17.507 4.88 16.749 0 23.21 ? C2N NAP 207 A 1 HETATM 38 C C3N NAP . . . B 2 16.438 5.029 15.928 0 22.85 ? C3N NAP 207 A 1 HETATM 39 C C7N NAP . . . B 2 16.146 3.823 14.935 0 22.65 ? C7N NAP 207 A 1 HETATM 40 O O7N NAP . . . B 2 15.219 4.004 14.252 0 22.53 ? O7N NAP 207 A 1 HETATM 41 N N7N NAP . . . B 2 16.921 2.744 14.932 0 22.53 ? N7N NAP 207 A 1 HETATM 42 C C4N NAP . . . B 2 15.518 6.339 15.948 0 22.93 ? C4N NAP 207 A 1 HETATM 43 C C5N NAP . . . B 2 15.987 7.417 17.005 0 23.08 ? C5N NAP 207 A 1 HETATM 44 C C6N NAP . . . B 2 17.124 7.162 17.814 0 23.35 ? C6N NAP 207 A 1 HETATM 45 P P2B NAP . . . B 2 17.577 16.934 27.616 0.5 27.5 ? P2B NAP 207 A 1 HETATM 46 O O1X NAP . . . B 2 16.613 17.175 28.651 0.5 28.14 ? O1X NAP 207 A 1 HETATM 47 O O2X NAP . . . B 2 17.936 17.948 26.581 0.5 26.94 ? O2X NAP 207 A 1 HETATM 48 O O3X NAP . . . B 2 18.73 16.129 28.03 0.5 26.51 ? O3X NAP 207 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #