data_1S4M # _model_server_result.job_id 8pzxTA5qfR9vY2dIuspYLA _model_server_result.datetime_utc '2024-11-24 08:30:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":294}' # _entry.id 1S4M # _exptl.entry_id 1S4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 242.233 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LUMICHROME _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.57 _cell.angle_gamma 90 _cell.entry_id 1S4M _cell.length_a 66.093 _cell.length_b 82.163 _cell.length_c 66.754 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S4M _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLY 119 A GLY 119 1_555 C MG MG . A MG 295 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc2 C MG MG . A MG 295 1_555 F O HOH . A HOH 738 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc3 C MG MG . A MG 295 1_555 F O HOH . A HOH 739 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc4 C MG MG . A MG 295 1_555 F O HOH . A HOH 740 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc5 C MG MG . A MG 295 1_555 F O HOH . A HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc6 C MG MG . A MG 295 1_555 G O HOH . B HOH 652 1_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? # _chem_comp.formula 'C12 H10 N4 O2' _chem_comp.formula_weight 242.233 _chem_comp.id LUM _chem_comp.mon_nstd_flag . _chem_comp.name LUMICHROME _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 7,8-DIMETHYLALLOXAZINE;6,7-DIMETHYLALLOXAZINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 LUM sing 181 n y N1 C10 LUM sing 182 n y N1 HN1 LUM sing 183 n n C2 O2 LUM doub 184 n n C2 N3 LUM sing 185 n y C10 C4A LUM doub 186 n y C10 N10 LUM sing 187 n y N3 C4 LUM sing 188 n y N3 HN3 LUM sing 189 n n C4 O4 LUM doub 190 n n C4 C4A LUM sing 191 n y C4A N5 LUM sing 192 n y N5 C5A LUM doub 193 n y C5A C6 LUM sing 194 n y C5A C9A LUM sing 195 n y C6 C7 LUM doub 196 n y C6 HC6 LUM sing 197 n n C9A C9 LUM sing 198 n y C9A N10 LUM doub 199 n y C7 C7M LUM sing 200 n n C7 C8 LUM sing 201 n y C7M H7M1 LUM sing 202 n n C7M H7M2 LUM sing 203 n n C7M H7M3 LUM sing 204 n n C8 C8M LUM sing 205 n n C8 C9 LUM doub 206 n y C8M H8M1 LUM sing 207 n n C8M H8M2 LUM sing 208 n n C8M H8M3 LUM sing 209 n n C9 HC9 LUM sing 210 n n # _atom_sites.entry_id 1S4M _atom_sites.fract_transf_matrix[1][1] 0.01513 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007567 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016749 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 295 295 MG MG . D 3 LUM A 1 294 294 LUM LUM . E 3 LUM B 1 594 594 LUM LUM . F 4 HOH A 1 603 603 HOH HOH . F 4 HOH A 2 604 604 HOH HOH . F 4 HOH A 3 605 605 HOH HOH . F 4 HOH A 4 606 606 HOH HOH . F 4 HOH A 5 607 607 HOH HOH . F 4 HOH A 6 608 608 HOH HOH . F 4 HOH A 7 611 611 HOH HOH . F 4 HOH A 8 612 612 HOH HOH . F 4 HOH A 9 615 615 HOH HOH . F 4 HOH A 10 616 616 HOH HOH . F 4 HOH A 11 618 618 HOH HOH . F 4 HOH A 12 620 620 HOH HOH . F 4 HOH A 13 622 622 HOH HOH . F 4 HOH A 14 626 626 HOH HOH . F 4 HOH A 15 631 631 HOH HOH . F 4 HOH A 16 632 632 HOH HOH . F 4 HOH A 17 633 633 HOH HOH . F 4 HOH A 18 634 634 HOH HOH . F 4 HOH A 19 636 636 HOH HOH . F 4 HOH A 20 639 639 HOH HOH . F 4 HOH A 21 640 640 HOH HOH . F 4 HOH A 22 645 645 HOH HOH . F 4 HOH A 23 646 646 HOH HOH . F 4 HOH A 24 647 647 HOH HOH . F 4 HOH A 25 648 648 HOH HOH . F 4 HOH A 26 649 649 HOH HOH . F 4 HOH A 27 650 650 HOH HOH . F 4 HOH A 28 651 651 HOH HOH . F 4 HOH A 29 655 655 HOH HOH . F 4 HOH A 30 666 666 HOH HOH . F 4 HOH A 31 669 669 HOH HOH . F 4 HOH A 32 670 670 HOH HOH . F 4 HOH A 33 671 671 HOH HOH . F 4 HOH A 34 672 672 HOH HOH . F 4 HOH A 35 673 673 HOH HOH . F 4 HOH A 36 674 674 HOH HOH . F 4 HOH A 37 675 675 HOH HOH . F 4 HOH A 38 676 676 HOH HOH . F 4 HOH A 39 677 677 HOH HOH . F 4 HOH A 40 678 678 HOH HOH . F 4 HOH A 41 680 680 HOH HOH . F 4 HOH A 42 682 682 HOH HOH . F 4 HOH A 43 687 687 HOH HOH . F 4 HOH A 44 689 689 HOH HOH . F 4 HOH A 45 690 690 HOH HOH . F 4 HOH A 46 691 691 HOH HOH . F 4 HOH A 47 693 693 HOH HOH . F 4 HOH A 48 696 696 HOH HOH . F 4 HOH A 49 697 697 HOH HOH . F 4 HOH A 50 698 698 HOH HOH . F 4 HOH A 51 699 699 HOH HOH . F 4 HOH A 52 703 703 HOH HOH . F 4 HOH A 53 704 704 HOH HOH . F 4 HOH A 54 705 705 HOH HOH . F 4 HOH A 55 706 706 HOH HOH . F 4 HOH A 56 707 707 HOH HOH . F 4 HOH A 57 711 711 HOH HOH . F 4 HOH A 58 712 712 HOH HOH . F 4 HOH A 59 714 714 HOH HOH . F 4 HOH A 60 715 715 HOH HOH . F 4 HOH A 61 716 716 HOH HOH . F 4 HOH A 62 717 717 HOH HOH . F 4 HOH A 63 718 718 HOH HOH . F 4 HOH A 64 721 721 HOH HOH . F 4 HOH A 65 722 722 HOH HOH . F 4 HOH A 66 725 725 HOH HOH . F 4 HOH A 67 726 726 HOH HOH . F 4 HOH A 68 730 730 HOH HOH . F 4 HOH A 69 731 731 HOH HOH . F 4 HOH A 70 733 733 HOH HOH . F 4 HOH A 71 734 734 HOH HOH . F 4 HOH A 72 736 736 HOH HOH . F 4 HOH A 73 738 738 HOH HOH . F 4 HOH A 74 739 739 HOH HOH . F 4 HOH A 75 740 740 HOH HOH . F 4 HOH A 76 741 741 HOH HOH . F 4 HOH A 77 744 744 HOH HOH . F 4 HOH A 78 745 745 HOH HOH . F 4 HOH A 79 746 746 HOH HOH . F 4 HOH A 80 749 749 HOH HOH . F 4 HOH A 81 751 751 HOH HOH . F 4 HOH A 82 752 752 HOH HOH . F 4 HOH A 83 754 754 HOH HOH . F 4 HOH A 84 755 755 HOH HOH . F 4 HOH A 85 756 756 HOH HOH . F 4 HOH A 86 759 759 HOH HOH . F 4 HOH A 87 766 766 HOH HOH . F 4 HOH A 88 768 768 HOH HOH . F 4 HOH A 89 771 771 HOH HOH . F 4 HOH A 90 772 772 HOH HOH . F 4 HOH A 91 773 773 HOH HOH . F 4 HOH A 92 774 774 HOH HOH . F 4 HOH A 93 776 776 HOH HOH . F 4 HOH A 94 777 777 HOH HOH . F 4 HOH A 95 778 778 HOH HOH . F 4 HOH A 96 779 779 HOH HOH . F 4 HOH A 97 780 780 HOH HOH . F 4 HOH A 98 781 781 HOH HOH . F 4 HOH A 99 791 791 HOH HOH . F 4 HOH A 100 792 792 HOH HOH . F 4 HOH A 101 793 793 HOH HOH . F 4 HOH A 102 794 794 HOH HOH . F 4 HOH A 103 795 795 HOH HOH . F 4 HOH A 104 800 800 HOH HOH . F 4 HOH A 105 806 806 HOH HOH . F 4 HOH A 106 807 807 HOH HOH . F 4 HOH A 107 808 808 HOH HOH . F 4 HOH A 108 810 810 HOH HOH . F 4 HOH A 109 811 811 HOH HOH . F 4 HOH A 110 812 812 HOH HOH . F 4 HOH A 111 814 814 HOH HOH . F 4 HOH A 112 816 816 HOH HOH . F 4 HOH A 113 817 817 HOH HOH . F 4 HOH A 114 823 823 HOH HOH . F 4 HOH A 115 825 825 HOH HOH . F 4 HOH A 116 827 827 HOH HOH . G 4 HOH B 1 601 601 HOH HOH . G 4 HOH B 2 602 602 HOH HOH . G 4 HOH B 3 609 609 HOH HOH . G 4 HOH B 4 610 610 HOH HOH . G 4 HOH B 5 613 613 HOH HOH . G 4 HOH B 6 614 614 HOH HOH . G 4 HOH B 7 617 617 HOH HOH . G 4 HOH B 8 619 619 HOH HOH . G 4 HOH B 9 621 621 HOH HOH . G 4 HOH B 10 623 623 HOH HOH . G 4 HOH B 11 624 624 HOH HOH . G 4 HOH B 12 625 625 HOH HOH . G 4 HOH B 13 627 627 HOH HOH . G 4 HOH B 14 628 628 HOH HOH . G 4 HOH B 15 629 629 HOH HOH . G 4 HOH B 16 630 630 HOH HOH . G 4 HOH B 17 635 635 HOH HOH . G 4 HOH B 18 637 637 HOH HOH . G 4 HOH B 19 638 638 HOH HOH . G 4 HOH B 20 641 641 HOH HOH . G 4 HOH B 21 642 642 HOH HOH . G 4 HOH B 22 643 643 HOH HOH . G 4 HOH B 23 644 644 HOH HOH . G 4 HOH B 24 652 652 HOH HOH . G 4 HOH B 25 653 653 HOH HOH . G 4 HOH B 26 654 654 HOH HOH . G 4 HOH B 27 656 656 HOH HOH . G 4 HOH B 28 657 657 HOH HOH . G 4 HOH B 29 658 658 HOH HOH . G 4 HOH B 30 659 659 HOH HOH . G 4 HOH B 31 660 660 HOH HOH . G 4 HOH B 32 661 661 HOH HOH . G 4 HOH B 33 662 662 HOH HOH . G 4 HOH B 34 663 663 HOH HOH . G 4 HOH B 35 664 664 HOH HOH . G 4 HOH B 36 665 665 HOH HOH . G 4 HOH B 37 667 667 HOH HOH . G 4 HOH B 38 668 668 HOH HOH . G 4 HOH B 39 679 679 HOH HOH . G 4 HOH B 40 681 681 HOH HOH . G 4 HOH B 41 683 683 HOH HOH . G 4 HOH B 42 684 684 HOH HOH . G 4 HOH B 43 685 685 HOH HOH . G 4 HOH B 44 686 686 HOH HOH . G 4 HOH B 45 688 688 HOH HOH . G 4 HOH B 46 692 692 HOH HOH . G 4 HOH B 47 694 694 HOH HOH . G 4 HOH B 48 695 695 HOH HOH . G 4 HOH B 49 700 700 HOH HOH . G 4 HOH B 50 701 701 HOH HOH . G 4 HOH B 51 702 702 HOH HOH . G 4 HOH B 52 708 708 HOH HOH . G 4 HOH B 53 709 709 HOH HOH . G 4 HOH B 54 710 710 HOH HOH . G 4 HOH B 55 713 713 HOH HOH . G 4 HOH B 56 719 719 HOH HOH . G 4 HOH B 57 720 720 HOH HOH . G 4 HOH B 58 723 723 HOH HOH . G 4 HOH B 59 724 724 HOH HOH . G 4 HOH B 60 727 727 HOH HOH . G 4 HOH B 61 728 728 HOH HOH . G 4 HOH B 62 729 729 HOH HOH . G 4 HOH B 63 732 732 HOH HOH . G 4 HOH B 64 735 735 HOH HOH . G 4 HOH B 65 737 737 HOH HOH . G 4 HOH B 66 742 742 HOH HOH . G 4 HOH B 67 743 743 HOH HOH . G 4 HOH B 68 747 747 HOH HOH . G 4 HOH B 69 748 748 HOH HOH . G 4 HOH B 70 750 750 HOH HOH . G 4 HOH B 71 753 753 HOH HOH . G 4 HOH B 72 757 757 HOH HOH . G 4 HOH B 73 758 758 HOH HOH . G 4 HOH B 74 760 760 HOH HOH . G 4 HOH B 75 761 761 HOH HOH . G 4 HOH B 76 762 762 HOH HOH . G 4 HOH B 77 763 763 HOH HOH . G 4 HOH B 78 764 764 HOH HOH . G 4 HOH B 79 765 765 HOH HOH . G 4 HOH B 80 767 767 HOH HOH . G 4 HOH B 81 769 769 HOH HOH . G 4 HOH B 82 770 770 HOH HOH . G 4 HOH B 83 775 775 HOH HOH . G 4 HOH B 84 782 782 HOH HOH . G 4 HOH B 85 783 783 HOH HOH . G 4 HOH B 86 784 784 HOH HOH . G 4 HOH B 87 785 785 HOH HOH . G 4 HOH B 88 786 786 HOH HOH . G 4 HOH B 89 787 787 HOH HOH . G 4 HOH B 90 788 788 HOH HOH . G 4 HOH B 91 789 789 HOH HOH . G 4 HOH B 92 790 790 HOH HOH . G 4 HOH B 93 796 796 HOH HOH . G 4 HOH B 94 797 797 HOH HOH . G 4 HOH B 95 798 798 HOH HOH . G 4 HOH B 96 799 799 HOH HOH . G 4 HOH B 97 801 801 HOH HOH . G 4 HOH B 98 802 802 HOH HOH . G 4 HOH B 99 803 803 HOH HOH . G 4 HOH B 100 804 804 HOH HOH . G 4 HOH B 101 805 805 HOH HOH . G 4 HOH B 102 809 809 HOH HOH . G 4 HOH B 103 813 813 HOH HOH . G 4 HOH B 104 815 815 HOH HOH . G 4 HOH B 105 818 818 HOH HOH . G 4 HOH B 106 819 819 HOH HOH . G 4 HOH B 107 820 820 HOH HOH . G 4 HOH B 108 821 821 HOH HOH . G 4 HOH B 109 822 822 HOH HOH . G 4 HOH B 110 824 824 HOH HOH . G 4 HOH B 111 826 826 HOH HOH . G 4 HOH B 112 828 828 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LUM . . . D 3 36.173 -4.66 25.756 1 45.26 ? N1 LUM 294 A 1 HETATM 2 C C2 LUM . . . D 3 35.704 -5.151 26.968 1 45.35 ? C2 LUM 294 A 1 HETATM 3 C C10 LUM . . . D 3 36.122 -5.373 24.588 1 44.89 ? C10 LUM 294 A 1 HETATM 4 O O2 LUM . . . D 3 35.81 -4.426 27.932 1 46.58 ? O2 LUM 294 A 1 HETATM 5 N N3 LUM . . . D 3 35.172 -6.401 26.932 1 44.23 ? N3 LUM 294 A 1 HETATM 6 C C4 LUM . . . D 3 35.033 -7.269 25.855 1 44.85 ? C4 LUM 294 A 1 HETATM 7 O O4 LUM . . . D 3 34.528 -8.377 25.975 1 46.82 ? O4 LUM 294 A 1 HETATM 8 C C4A LUM . . . D 3 35.567 -6.689 24.564 1 44.08 ? C4A LUM 294 A 1 HETATM 9 N N5 LUM . . . D 3 35.502 -7.414 23.477 1 44.04 ? N5 LUM 294 A 1 HETATM 10 C C5A LUM . . . D 3 36.003 -6.866 22.276 1 43.57 ? C5A LUM 294 A 1 HETATM 11 C C6 LUM . . . D 3 35.901 -7.718 21.107 1 43.95 ? C6 LUM 294 A 1 HETATM 12 C C9A LUM . . . D 3 36.562 -5.556 22.227 1 42.91 ? C9A LUM 294 A 1 HETATM 13 C C7 LUM . . . D 3 36.392 -7.166 19.934 1 43.66 ? C7 LUM 294 A 1 HETATM 14 C C7M LUM . . . D 3 36.354 -7.931 18.61 1 44.4 ? C7M LUM 294 A 1 HETATM 15 C C8 LUM . . . D 3 36.961 -5.81 19.926 1 42.73 ? C8 LUM 294 A 1 HETATM 16 C C8M LUM . . . D 3 37.491 -5.24 18.567 1 45.36 ? C8M LUM 294 A 1 HETATM 17 C C9 LUM . . . D 3 37.076 -4.966 21.024 1 43.56 ? C9 LUM 294 A 1 HETATM 18 N N10 LUM . . . D 3 36.605 -4.815 23.461 1 43.71 ? N10 LUM 294 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 18 #