data_1S56 # _model_server_result.job_id eH8u31nicgqvxnAc5bHUsA _model_server_result.datetime_utc '2024-10-10 08:24:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":144}' # _entry.id 1S56 # _exptl.entry_id 1S56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S56 _cell.length_a 44.321 _cell.length_b 61.959 _cell.length_c 90.747 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,Q 1 1 B,J,K,L,M,N,O,P,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 79 A GLN 79 1_555 D K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc2 A O VAL 80 A VAL 80 1_555 D K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.185 ? metalc ? metalc3 A NE2 HIS 81 A HIS 81 1_555 E FE HEC . A HEC 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc4 A O GLN 82 A GLN 82 1_555 D K K . A K 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.845 ? metalc ? metalc5 E FE HEC . A HEC 144 1_555 C C CYN . A CYN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.108 ? metalc ? metalc6 E FE HEC . A HEC 144 1_555 C N CYN . A CYN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc7 D K K . A K 401 1_555 B O GLY 83 B GLY 83 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc8 B NE2 HIS 81 B HIS 81 1_555 L FE HEM . B HEM 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc9 L FE HEM . B HEM 144 1_555 J N CYN . B CYN 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc10 L FE HEM . B HEM 144 1_555 J C CYN . B CYN 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 117 n n FE NB HEC sing 118 n n FE NC HEC sing 119 n n FE ND HEC sing 120 n n CHA C1A HEC doub 121 n n CHA C4D HEC sing 122 n n CHA HHA HEC sing 123 n n CHB C4A HEC doub 124 n n CHB C1B HEC sing 125 n n CHB HHB HEC sing 126 n n CHC C4B HEC doub 127 n n CHC C1C HEC sing 128 n n CHC HHC HEC sing 129 n n CHD C4C HEC doub 130 n n CHD C1D HEC sing 131 n n CHD HHD HEC sing 132 n n NA C1A HEC sing 133 n y NA C4A HEC sing 134 n y C1A C2A HEC sing 135 n y C2A C3A HEC doub 136 n y C2A CAA HEC sing 137 n n C3A C4A HEC sing 138 n y C3A CMA HEC sing 139 n n CMA HMA1 HEC sing 140 n n CMA HMA2 HEC sing 141 n n CMA HMA3 HEC sing 142 n n CAA CBA HEC sing 143 n n CAA HAA1 HEC sing 144 n n CAA HAA2 HEC sing 145 n n CBA CGA HEC sing 146 n n CBA HBA1 HEC sing 147 n n CBA HBA2 HEC sing 148 n n CGA O1A HEC doub 149 n n CGA O2A HEC sing 150 n n O2A H2A HEC sing 151 n n NB C1B HEC sing 152 n y NB C4B HEC sing 153 n y C1B C2B HEC doub 154 n y C2B C3B HEC sing 155 n y C2B CMB HEC sing 156 n n C3B C4B HEC sing 157 n y C3B CAB HEC doub 158 e n CMB HMB1 HEC sing 159 n n CMB HMB2 HEC sing 160 n n CMB HMB3 HEC sing 161 n n CAB CBB HEC sing 162 n n CAB HAB HEC sing 163 n n CBB HBB1 HEC sing 164 n n CBB HBB2 HEC sing 165 n n CBB HBB3 HEC sing 166 n n NC C1C HEC sing 167 n y NC C4C HEC sing 168 n y C1C C2C HEC doub 169 n y C2C C3C HEC sing 170 n y C2C CMC HEC sing 171 n n C3C C4C HEC sing 172 n y C3C CAC HEC doub 173 e n CMC HMC1 HEC sing 174 n n CMC HMC2 HEC sing 175 n n CMC HMC3 HEC sing 176 n n CAC CBC HEC sing 177 n n CAC HAC HEC sing 178 n n CBC HBC1 HEC sing 179 n n CBC HBC2 HEC sing 180 n n CBC HBC3 HEC sing 181 n n ND C1D HEC sing 182 n y ND C4D HEC sing 183 n y C1D C2D HEC doub 184 n y C2D C3D HEC sing 185 n y C2D CMD HEC sing 186 n n C3D C4D HEC doub 187 n y C3D CAD HEC sing 188 n n CMD HMD1 HEC sing 189 n n CMD HMD2 HEC sing 190 n n CMD HMD3 HEC sing 191 n n CAD CBD HEC sing 192 n n CAD HAD1 HEC sing 193 n n CAD HAD2 HEC sing 194 n n CBD CGD HEC sing 195 n n CBD HBD1 HEC sing 196 n n CBD HBD2 HEC sing 197 n n CGD O1D HEC doub 198 n n CGD O2D HEC sing 199 n n O2D H2D HEC sing 200 n n # _atom_sites.entry_id 1S56 _atom_sites.fract_transf_matrix[1][1] 0.022563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01614 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01102 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CYN A 1 145 145 CYN CYN . D 3 K A 1 401 1 K K1 . E 4 HEC A 1 144 144 HEC HEM . F 5 XE A 1 202 2 XE XE . G 5 XE A 1 203 3 XE XE . H 5 XE A 1 207 7 XE XE . I 5 XE A 1 208 8 XE XE . J 2 CYN B 1 245 145 CYN CYN . K 6 PO4 B 1 301 1 PO4 PO4 . L 7 HEM B 1 144 144 HEM HEM . M 5 XE B 1 201 1 XE XE . N 5 XE B 1 204 4 XE XE . O 5 XE B 1 205 5 XE XE . P 5 XE B 1 206 6 XE XE . Q 8 HOH A 1 402 2 HOH HOH . Q 8 HOH A 2 403 3 HOH HOH . Q 8 HOH A 3 404 4 HOH HOH . Q 8 HOH A 4 405 6 HOH HOH . Q 8 HOH A 5 406 7 HOH HOH . Q 8 HOH A 6 407 8 HOH HOH . Q 8 HOH A 7 408 10 HOH HOH . Q 8 HOH A 8 409 12 HOH HOH . Q 8 HOH A 9 410 14 HOH HOH . Q 8 HOH A 10 411 15 HOH HOH . Q 8 HOH A 11 412 16 HOH HOH . Q 8 HOH A 12 413 17 HOH HOH . Q 8 HOH A 13 414 18 HOH HOH . Q 8 HOH A 14 415 20 HOH HOH . Q 8 HOH A 15 416 21 HOH HOH . Q 8 HOH A 16 417 23 HOH HOH . Q 8 HOH A 17 418 28 HOH HOH . Q 8 HOH A 18 419 30 HOH HOH . Q 8 HOH A 19 420 33 HOH HOH . Q 8 HOH A 20 421 34 HOH HOH . Q 8 HOH A 21 422 35 HOH HOH . Q 8 HOH A 22 423 36 HOH HOH . Q 8 HOH A 23 424 38 HOH HOH . Q 8 HOH A 24 425 42 HOH HOH . Q 8 HOH A 25 426 43 HOH HOH . Q 8 HOH A 26 427 46 HOH HOH . Q 8 HOH A 27 428 49 HOH HOH . Q 8 HOH A 28 429 50 HOH HOH . Q 8 HOH A 29 430 51 HOH HOH . Q 8 HOH A 30 431 53 HOH HOH . Q 8 HOH A 31 432 54 HOH HOH . Q 8 HOH A 32 433 55 HOH HOH . Q 8 HOH A 33 434 58 HOH HOH . Q 8 HOH A 34 435 59 HOH HOH . Q 8 HOH A 35 436 60 HOH HOH . Q 8 HOH A 36 437 61 HOH HOH . Q 8 HOH A 37 438 63 HOH HOH . Q 8 HOH A 38 439 64 HOH HOH . Q 8 HOH A 39 440 65 HOH HOH . Q 8 HOH A 40 441 67 HOH HOH . Q 8 HOH A 41 442 69 HOH HOH . Q 8 HOH A 42 443 70 HOH HOH . Q 8 HOH A 43 444 71 HOH HOH . Q 8 HOH A 44 445 72 HOH HOH . Q 8 HOH A 45 446 73 HOH HOH . Q 8 HOH A 46 447 74 HOH HOH . Q 8 HOH A 47 448 76 HOH HOH . Q 8 HOH A 48 449 78 HOH HOH . Q 8 HOH A 49 450 80 HOH HOH . Q 8 HOH A 50 451 81 HOH HOH . Q 8 HOH A 51 452 82 HOH HOH . Q 8 HOH A 52 453 87 HOH HOH . Q 8 HOH A 53 454 90 HOH HOH . Q 8 HOH A 54 455 91 HOH HOH . Q 8 HOH A 55 456 92 HOH HOH . Q 8 HOH A 56 457 94 HOH HOH . Q 8 HOH A 57 458 97 HOH HOH . Q 8 HOH A 58 459 98 HOH HOH . Q 8 HOH A 59 460 99 HOH HOH . Q 8 HOH A 60 461 101 HOH HOH . Q 8 HOH A 61 462 102 HOH HOH . Q 8 HOH A 62 463 106 HOH HOH . R 8 HOH B 1 302 1 HOH HOH . R 8 HOH B 2 303 5 HOH HOH . R 8 HOH B 3 304 9 HOH HOH . R 8 HOH B 4 305 11 HOH HOH . R 8 HOH B 5 306 13 HOH HOH . R 8 HOH B 6 307 19 HOH HOH . R 8 HOH B 7 308 22 HOH HOH . R 8 HOH B 8 309 24 HOH HOH . R 8 HOH B 9 310 25 HOH HOH . R 8 HOH B 10 311 26 HOH HOH . R 8 HOH B 11 312 27 HOH HOH . R 8 HOH B 12 313 29 HOH HOH . R 8 HOH B 13 314 31 HOH HOH . R 8 HOH B 14 315 32 HOH HOH . R 8 HOH B 15 316 37 HOH HOH . R 8 HOH B 16 317 39 HOH HOH . R 8 HOH B 17 318 40 HOH HOH . R 8 HOH B 18 319 41 HOH HOH . R 8 HOH B 19 320 44 HOH HOH . R 8 HOH B 20 321 45 HOH HOH . R 8 HOH B 21 322 47 HOH HOH . R 8 HOH B 22 323 48 HOH HOH . R 8 HOH B 23 324 52 HOH HOH . R 8 HOH B 24 325 56 HOH HOH . R 8 HOH B 25 326 57 HOH HOH . R 8 HOH B 26 327 62 HOH HOH . R 8 HOH B 27 328 66 HOH HOH . R 8 HOH B 28 329 68 HOH HOH . R 8 HOH B 29 330 75 HOH HOH . R 8 HOH B 30 331 77 HOH HOH . R 8 HOH B 31 332 79 HOH HOH . R 8 HOH B 32 333 83 HOH HOH . R 8 HOH B 33 334 84 HOH HOH . R 8 HOH B 34 335 85 HOH HOH . R 8 HOH B 35 336 86 HOH HOH . R 8 HOH B 36 337 88 HOH HOH . R 8 HOH B 37 338 89 HOH HOH . R 8 HOH B 38 339 93 HOH HOH . R 8 HOH B 39 340 95 HOH HOH . R 8 HOH B 40 341 96 HOH HOH . R 8 HOH B 41 342 100 HOH HOH . R 8 HOH B 42 343 103 HOH HOH . R 8 HOH B 43 344 104 HOH HOH . R 8 HOH B 44 345 105 HOH HOH . R 8 HOH B 45 346 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . E 4 16.671 18.877 16.351 1 28.23 ? FE HEC 144 A 1 HETATM 2 C CHA HEC . . . E 4 15.758 21.181 18.839 1 27.42 ? CHA HEC 144 A 1 HETATM 3 C CHB HEC . . . E 4 14.557 20.537 14.21 1 28.1 ? CHB HEC 144 A 1 HETATM 4 C CHC HEC . . . E 4 17.87 17.041 13.807 1 26.6 ? CHC HEC 144 A 1 HETATM 5 C CHD HEC . . . E 4 18.487 17.117 18.643 1 26.64 ? CHD HEC 144 A 1 HETATM 6 N NA HEC . . . E 4 15.446 20.576 16.491 1 27.72 ? NA HEC 144 A 1 HETATM 7 C C1A HEC . . . E 4 15.159 21.323 17.612 1 27.04 ? C1A HEC 144 A 1 HETATM 8 C C2A HEC . . . E 4 14.12 22.271 17.269 1 26.26 ? C2A HEC 144 A 1 HETATM 9 C C3A HEC . . . E 4 13.798 22.086 15.991 1 27.26 ? C3A HEC 144 A 1 HETATM 10 C C4A HEC . . . E 4 14.612 21.021 15.486 1 27.86 ? C4A HEC 144 A 1 HETATM 11 C CMA HEC . . . E 4 12.742 22.851 15.159 1 27.64 ? CMA HEC 144 A 1 HETATM 12 C CAA HEC . . . E 4 13.5 23.313 18.221 1 25.06 ? CAA HEC 144 A 1 HETATM 13 C CBA HEC . . . E 4 14.542 24.392 18.494 1 25.42 ? CBA HEC 144 A 1 HETATM 14 C CGA HEC . . . E 4 14.039 25.421 19.49 1 26.11 ? CGA HEC 144 A 1 HETATM 15 O O1A HEC . . . E 4 13.984 26.613 19.109 1 25.81 ? O1A HEC 144 A 1 HETATM 16 O O2A HEC . . . E 4 13.701 25.064 20.659 1 25.82 ? O2A HEC 144 A 1 HETATM 17 N NB HEC . . . E 4 16.277 18.799 14.407 1 27.49 ? NB HEC 144 A 1 HETATM 18 C C1B HEC . . . E 4 15.386 19.575 13.705 1 28.16 ? C1B HEC 144 A 1 HETATM 19 C C2B HEC . . . E 4 15.466 19.227 12.309 1 27.94 ? C2B HEC 144 A 1 HETATM 20 C C3B HEC . . . E 4 16.38 18.266 12.179 1 27.29 ? C3B HEC 144 A 1 HETATM 21 C C4B HEC . . . E 4 16.911 17.976 13.495 1 27.47 ? C4B HEC 144 A 1 HETATM 22 C CMB HEC . . . E 4 14.595 19.91 11.234 1 28.12 ? CMB HEC 144 A 1 HETATM 23 C CAB HEC . . . E 4 16.815 17.559 10.887 1 28.25 ? CAB HEC 144 A 1 HETATM 24 C CBB HEC . . . E 4 16.904 18.254 9.757 1 28.41 ? CBB HEC 144 A 1 HETATM 25 N NC HEC . . . E 4 17.974 17.417 16.237 1 26.61 ? NC HEC 144 A 1 HETATM 26 C C1C HEC . . . E 4 18.263 16.702 15.092 1 26.42 ? C1C HEC 144 A 1 HETATM 27 C C2C HEC . . . E 4 19.03 15.534 15.485 1 25.06 ? C2C HEC 144 A 1 HETATM 28 C C3C HEC . . . E 4 19.186 15.565 16.813 1 25 ? C3C HEC 144 A 1 HETATM 29 C C4C HEC . . . E 4 18.526 16.741 17.319 1 26.64 ? C4C HEC 144 A 1 HETATM 30 C CMC HEC . . . E 4 19.561 14.463 14.508 1 25.87 ? CMC HEC 144 A 1 HETATM 31 C CAC HEC . . . E 4 19.939 14.578 17.723 1 24.14 ? CAC HEC 144 A 1 HETATM 32 C CBC HEC . . . E 4 19.585 13.298 17.802 1 24.49 ? CBC HEC 144 A 1 HETATM 33 N ND HEC . . . E 4 17.123 19.182 18.422 1 28.77 ? ND HEC 144 A 1 HETATM 34 C C1D HEC . . . E 4 17.762 18.175 19.156 1 28.5 ? C1D HEC 144 A 1 HETATM 35 C C2D HEC . . . E 4 17.531 18.409 20.563 1 29.32 ? C2D HEC 144 A 1 HETATM 36 C C3D HEC . . . E 4 16.671 19.683 20.64 1 30.03 ? C3D HEC 144 A 1 HETATM 37 C C4D HEC . . . E 4 16.465 20.083 19.258 1 28.43 ? C4D HEC 144 A 1 HETATM 38 C CMD HEC . . . E 4 18.051 17.549 21.731 1 30.07 ? CMD HEC 144 A 1 HETATM 39 C CAD HEC . . . E 4 16.12 20.364 21.918 1 29.75 ? CAD HEC 144 A 1 HETATM 40 C CBD HEC . . . E 4 17.205 21.092 22.682 1 30.98 ? CBD HEC 144 A 1 HETATM 41 C CGD HEC . . . E 4 16.562 21.816 23.844 1 32.15 ? CGD HEC 144 A 1 HETATM 42 O O1D HEC . . . E 4 16.676 23.08 23.894 1 30.31 ? O1D HEC 144 A 1 HETATM 43 O O2D HEC . . . E 4 15.931 21.124 24.698 1 32.09 ? O2D HEC 144 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #