data_1S59 # _model_server_result.job_id LfjrQzxHNoM5duOiJBJsqQ _model_server_result.datetime_utc '2024-10-31 07:21:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s59 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1102}' # _entry.id 1S59 # _exptl.entry_id 1S59 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S59 _cell.length_a 69.035 _cell.length_b 108.52 _cell.length_c 118.316 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S59 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id DGT _chem_comp.mon_nstd_flag . _chem_comp.name "2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G DGT sing 127 n n PG O2G DGT sing 128 n n O1G HO1G DGT sing 129 n n O2G HO2G DGT sing 130 n n O3G PG DGT doub 131 n n O3B PG DGT sing 132 n n PB O3B DGT sing 133 n n PB O1B DGT sing 134 n n PB O3A DGT sing 135 n n O1B HO1B DGT sing 136 n n O2B PB DGT doub 137 n n PA O3A DGT sing 138 n n PA O1A DGT sing 139 n n O1A HO1A DGT sing 140 n n O2A PA DGT doub 141 n n O5' PA DGT sing 142 n n O5' C5' DGT sing 143 n n C5' H5' DGT sing 144 n n C5' "H5'A" DGT sing 145 n n C4' C5' DGT sing 146 n n C4' H4' DGT sing 147 n n O4' C4' DGT sing 148 n n C3' C4' DGT sing 149 n n C3' O3' DGT sing 150 n n C3' H3' DGT sing 151 n n O3' HO3' DGT sing 152 n n C2' C3' DGT sing 153 n n C2' C1' DGT sing 154 n n C2' H2' DGT sing 155 n n C2' "H2'A" DGT sing 156 n n C1' O4' DGT sing 157 n n C1' H1' DGT sing 158 n n N9 C1' DGT sing 159 n n N9 C4 DGT sing 160 n y C8 N9 DGT sing 161 n y C8 H8 DGT sing 162 n n N7 C8 DGT doub 163 n y N7 C5 DGT sing 164 n y C5 C6 DGT sing 165 n n C5 C4 DGT doub 166 n y C6 N1 DGT sing 167 n n O6 C6 DGT doub 168 n n N1 C2 DGT sing 169 n n C2 N3 DGT doub 170 n n C2 N2 DGT sing 171 n n N2 HN2 DGT sing 172 n n N2 HN2A DGT sing 173 n n C4 N3 DGT sing 174 n n N1 H16 DGT sing 175 n n # _atom_sites.entry_id 1S59 _atom_sites.fract_transf_matrix[1][1] 0.014485 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009215 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008452 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 DGI A 1 1101 101 DGI DGD . H 3 DGT C 1 1102 102 DGT DGT . I 4 HOH A 1 1102 5 HOH TIP . I 4 HOH A 2 1103 8 HOH TIP . I 4 HOH A 3 1104 10 HOH TIP . I 4 HOH A 4 1105 20 HOH TIP . I 4 HOH A 5 1106 31 HOH TIP . I 4 HOH A 6 1107 47 HOH TIP . I 4 HOH A 7 1108 52 HOH TIP . I 4 HOH A 8 1109 60 HOH TIP . I 4 HOH A 9 1110 62 HOH TIP . I 4 HOH A 10 1111 67 HOH TIP . I 4 HOH A 11 1112 70 HOH TIP . I 4 HOH A 12 1113 72 HOH TIP . I 4 HOH A 13 1114 75 HOH TIP . I 4 HOH A 14 1115 79 HOH TIP . I 4 HOH A 15 1116 80 HOH TIP . I 4 HOH A 16 1117 100 HOH TIP . I 4 HOH A 17 1118 101 HOH TIP . I 4 HOH A 18 1119 108 HOH TIP . I 4 HOH A 19 1120 109 HOH TIP . I 4 HOH A 20 1121 114 HOH TIP . I 4 HOH A 21 1122 118 HOH TIP . I 4 HOH A 22 1123 119 HOH TIP . I 4 HOH A 23 1124 122 HOH TIP . I 4 HOH A 24 1125 124 HOH TIP . I 4 HOH A 25 1126 128 HOH TIP . I 4 HOH A 26 1127 129 HOH TIP . I 4 HOH A 27 1128 132 HOH TIP . I 4 HOH A 28 1129 134 HOH TIP . I 4 HOH A 29 1130 142 HOH TIP . I 4 HOH A 30 1131 149 HOH TIP . I 4 HOH A 31 1132 156 HOH TIP . I 4 HOH A 32 1133 158 HOH TIP . I 4 HOH A 33 1134 159 HOH TIP . I 4 HOH A 34 1135 160 HOH TIP . I 4 HOH A 35 1136 166 HOH TIP . I 4 HOH A 36 1137 170 HOH TIP . I 4 HOH A 37 1138 179 HOH TIP . I 4 HOH A 38 1139 180 HOH TIP . I 4 HOH A 39 1140 183 HOH TIP . I 4 HOH A 40 1141 204 HOH TIP . I 4 HOH A 41 1142 208 HOH TIP . I 4 HOH A 42 1143 214 HOH TIP . I 4 HOH A 43 1144 217 HOH TIP . I 4 HOH A 44 1145 224 HOH TIP . I 4 HOH A 45 1146 225 HOH TIP . I 4 HOH A 46 1147 234 HOH TIP . I 4 HOH A 47 1148 238 HOH TIP . J 4 HOH B 1 232 7 HOH TIP . J 4 HOH B 2 233 18 HOH TIP . J 4 HOH B 3 234 24 HOH TIP . J 4 HOH B 4 235 25 HOH TIP . J 4 HOH B 5 236 27 HOH TIP . J 4 HOH B 6 237 28 HOH TIP . J 4 HOH B 7 238 33 HOH TIP . J 4 HOH B 8 239 39 HOH TIP . J 4 HOH B 9 240 41 HOH TIP . J 4 HOH B 10 241 43 HOH TIP . J 4 HOH B 11 242 71 HOH TIP . J 4 HOH B 12 243 76 HOH TIP . J 4 HOH B 13 244 77 HOH TIP . J 4 HOH B 14 245 78 HOH TIP . J 4 HOH B 15 246 81 HOH TIP . J 4 HOH B 16 247 83 HOH TIP . J 4 HOH B 17 248 87 HOH TIP . J 4 HOH B 18 249 90 HOH TIP . J 4 HOH B 19 250 92 HOH TIP . J 4 HOH B 20 251 94 HOH TIP . J 4 HOH B 21 252 95 HOH TIP . J 4 HOH B 22 253 98 HOH TIP . J 4 HOH B 23 254 107 HOH TIP . J 4 HOH B 24 255 110 HOH TIP . J 4 HOH B 25 256 112 HOH TIP . J 4 HOH B 26 257 116 HOH TIP . J 4 HOH B 27 258 123 HOH TIP . J 4 HOH B 28 259 138 HOH TIP . J 4 HOH B 29 260 146 HOH TIP . J 4 HOH B 30 261 148 HOH TIP . J 4 HOH B 31 262 163 HOH TIP . J 4 HOH B 32 263 164 HOH TIP . J 4 HOH B 33 264 168 HOH TIP . J 4 HOH B 34 265 172 HOH TIP . J 4 HOH B 35 266 173 HOH TIP . J 4 HOH B 36 267 174 HOH TIP . J 4 HOH B 37 268 182 HOH TIP . J 4 HOH B 38 269 185 HOH TIP . J 4 HOH B 39 270 201 HOH TIP . J 4 HOH B 40 271 206 HOH TIP . J 4 HOH B 41 272 215 HOH TIP . J 4 HOH B 42 273 218 HOH TIP . J 4 HOH B 43 274 227 HOH TIP . J 4 HOH B 44 275 233 HOH TIP . J 4 HOH B 45 276 237 HOH TIP . J 4 HOH B 46 277 239 HOH TIP . K 4 HOH C 1 1103 1 HOH TIP . K 4 HOH C 2 1104 36 HOH TIP . K 4 HOH C 3 1105 37 HOH TIP . K 4 HOH C 4 1106 46 HOH TIP . K 4 HOH C 5 1107 48 HOH TIP . K 4 HOH C 6 1108 49 HOH TIP . K 4 HOH C 7 1109 53 HOH TIP . K 4 HOH C 8 1110 56 HOH TIP . K 4 HOH C 9 1111 57 HOH TIP . K 4 HOH C 10 1112 58 HOH TIP . K 4 HOH C 11 1113 59 HOH TIP . K 4 HOH C 12 1114 68 HOH TIP . K 4 HOH C 13 1115 86 HOH TIP . K 4 HOH C 14 1116 96 HOH TIP . K 4 HOH C 15 1117 111 HOH TIP . K 4 HOH C 16 1118 136 HOH TIP . K 4 HOH C 17 1119 144 HOH TIP . K 4 HOH C 18 1120 150 HOH TIP . K 4 HOH C 19 1121 153 HOH TIP . K 4 HOH C 20 1122 167 HOH TIP . K 4 HOH C 21 1123 176 HOH TIP . K 4 HOH C 22 1124 177 HOH TIP . K 4 HOH C 23 1125 181 HOH TIP . K 4 HOH C 24 1126 184 HOH TIP . K 4 HOH C 25 1127 189 HOH TIP . K 4 HOH C 26 1128 193 HOH TIP . K 4 HOH C 27 1129 205 HOH TIP . K 4 HOH C 28 1130 209 HOH TIP . K 4 HOH C 29 1131 219 HOH TIP . K 4 HOH C 30 1132 220 HOH TIP . K 4 HOH C 31 1133 221 HOH TIP . K 4 HOH C 32 1134 232 HOH TIP . L 4 HOH D 1 232 6 HOH TIP . L 4 HOH D 2 233 14 HOH TIP . L 4 HOH D 3 234 16 HOH TIP . L 4 HOH D 4 235 23 HOH TIP . L 4 HOH D 5 236 34 HOH TIP . L 4 HOH D 6 237 35 HOH TIP . L 4 HOH D 7 238 44 HOH TIP . L 4 HOH D 8 239 55 HOH TIP . L 4 HOH D 9 240 64 HOH TIP . L 4 HOH D 10 241 74 HOH TIP . L 4 HOH D 11 242 82 HOH TIP . L 4 HOH D 12 243 89 HOH TIP . L 4 HOH D 13 244 93 HOH TIP . L 4 HOH D 14 245 99 HOH TIP . L 4 HOH D 15 246 102 HOH TIP . L 4 HOH D 16 247 103 HOH TIP . L 4 HOH D 17 248 104 HOH TIP . L 4 HOH D 18 249 105 HOH TIP . L 4 HOH D 19 250 117 HOH TIP . L 4 HOH D 20 251 121 HOH TIP . L 4 HOH D 21 252 126 HOH TIP . L 4 HOH D 22 253 127 HOH TIP . L 4 HOH D 23 254 137 HOH TIP . L 4 HOH D 24 255 140 HOH TIP . L 4 HOH D 25 256 143 HOH TIP . L 4 HOH D 26 257 147 HOH TIP . L 4 HOH D 27 258 155 HOH TIP . L 4 HOH D 28 259 165 HOH TIP . L 4 HOH D 29 260 171 HOH TIP . L 4 HOH D 30 261 186 HOH TIP . L 4 HOH D 31 262 187 HOH TIP . L 4 HOH D 32 263 195 HOH TIP . L 4 HOH D 33 264 197 HOH TIP . L 4 HOH D 34 265 202 HOH TIP . L 4 HOH D 35 266 207 HOH TIP . L 4 HOH D 36 267 210 HOH TIP . L 4 HOH D 37 268 216 HOH TIP . L 4 HOH D 38 269 222 HOH TIP . L 4 HOH D 39 270 230 HOH TIP . L 4 HOH D 40 271 236 HOH TIP . L 4 HOH D 41 272 240 HOH TIP . M 4 HOH E 1 232 2 HOH TIP . M 4 HOH E 2 233 9 HOH TIP . M 4 HOH E 3 234 15 HOH TIP . M 4 HOH E 4 235 17 HOH TIP . M 4 HOH E 5 236 29 HOH TIP . M 4 HOH E 6 237 40 HOH TIP . M 4 HOH E 7 238 51 HOH TIP . M 4 HOH E 8 239 54 HOH TIP . M 4 HOH E 9 240 69 HOH TIP . M 4 HOH E 10 241 84 HOH TIP . M 4 HOH E 11 242 85 HOH TIP . M 4 HOH E 12 243 106 HOH TIP . M 4 HOH E 13 244 113 HOH TIP . M 4 HOH E 14 245 130 HOH TIP . M 4 HOH E 15 246 131 HOH TIP . M 4 HOH E 16 247 133 HOH TIP . M 4 HOH E 17 248 152 HOH TIP . M 4 HOH E 18 249 162 HOH TIP . M 4 HOH E 19 250 169 HOH TIP . M 4 HOH E 20 251 190 HOH TIP . M 4 HOH E 21 252 191 HOH TIP . M 4 HOH E 22 253 192 HOH TIP . M 4 HOH E 23 254 194 HOH TIP . M 4 HOH E 24 255 198 HOH TIP . M 4 HOH E 25 256 200 HOH TIP . M 4 HOH E 26 257 203 HOH TIP . M 4 HOH E 27 258 212 HOH TIP . M 4 HOH E 28 259 226 HOH TIP . M 4 HOH E 29 260 231 HOH TIP . N 4 HOH F 1 232 3 HOH TIP . N 4 HOH F 2 233 4 HOH TIP . N 4 HOH F 3 234 11 HOH TIP . N 4 HOH F 4 235 12 HOH TIP . N 4 HOH F 5 236 13 HOH TIP . N 4 HOH F 6 237 19 HOH TIP . N 4 HOH F 7 238 21 HOH TIP . N 4 HOH F 8 239 22 HOH TIP . N 4 HOH F 9 240 26 HOH TIP . N 4 HOH F 10 241 30 HOH TIP . N 4 HOH F 11 242 32 HOH TIP . N 4 HOH F 12 243 38 HOH TIP . N 4 HOH F 13 244 42 HOH TIP . N 4 HOH F 14 245 45 HOH TIP . N 4 HOH F 15 246 50 HOH TIP . N 4 HOH F 16 247 61 HOH TIP . N 4 HOH F 17 248 63 HOH TIP . N 4 HOH F 18 249 66 HOH TIP . N 4 HOH F 19 250 73 HOH TIP . N 4 HOH F 20 251 88 HOH TIP . N 4 HOH F 21 252 91 HOH TIP . N 4 HOH F 22 253 97 HOH TIP . N 4 HOH F 23 254 115 HOH TIP . N 4 HOH F 24 255 120 HOH TIP . N 4 HOH F 25 256 135 HOH TIP . N 4 HOH F 26 257 139 HOH TIP . N 4 HOH F 27 258 141 HOH TIP . N 4 HOH F 28 259 145 HOH TIP . N 4 HOH F 29 260 151 HOH TIP . N 4 HOH F 30 261 154 HOH TIP . N 4 HOH F 31 262 157 HOH TIP . N 4 HOH F 32 263 161 HOH TIP . N 4 HOH F 33 264 175 HOH TIP . N 4 HOH F 34 265 178 HOH TIP . N 4 HOH F 35 266 188 HOH TIP . N 4 HOH F 36 267 199 HOH TIP . N 4 HOH F 37 268 211 HOH TIP . N 4 HOH F 38 269 213 HOH TIP . N 4 HOH F 39 270 223 HOH TIP . N 4 HOH F 40 271 235 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG DGT . . . H 3 59 43.646 7.628 1 79.57 ? PG DGT 1102 C 1 HETATM 2 O O1G DGT . . . H 3 58.127 42.554 8.315 1 80.63 ? O1G DGT 1102 C 1 HETATM 3 O O2G DGT . . . H 3 59.202 43.303 6.139 1 79.93 ? O2G DGT 1102 C 1 HETATM 4 O O3G DGT . . . H 3 60.379 43.624 8.432 1 79.72 ? O3G DGT 1102 C 1 HETATM 5 O O3B DGT . . . H 3 57.964 45.054 7.977 1 76.89 ? O3B DGT 1102 C 1 HETATM 6 P PB DGT . . . H 3 56.998 46.078 6.919 1 75.22 ? PB DGT 1102 C 1 HETATM 7 O O1B DGT . . . H 3 56.073 45.127 6.37 1 77.01 ? O1B DGT 1102 C 1 HETATM 8 O O2B DGT . . . H 3 56.224 47.014 7.647 1 74.76 ? O2B DGT 1102 C 1 HETATM 9 O O3A DGT . . . H 3 57.538 46.848 5.63 1 71.19 ? O3A DGT 1102 C 1 HETATM 10 P PA DGT . . . H 3 58.664 48.021 5.396 1 65.83 ? PA DGT 1102 C 1 HETATM 11 O O1A DGT . . . H 3 58.917 48.042 3.927 1 66.98 ? O1A DGT 1102 C 1 HETATM 12 O O2A DGT . . . H 3 58.174 49.252 6.025 1 64.2 ? O2A DGT 1102 C 1 HETATM 13 O O5' DGT . . . H 3 59.923 47.524 6.081 1 63.67 ? O5' DGT 1102 C 1 HETATM 14 C C5' DGT . . . H 3 61.22 48.059 6.252 1 58.98 ? C5' DGT 1102 C 1 HETATM 15 C C4' DGT . . . H 3 61.795 46.919 7.053 1 55.34 ? C4' DGT 1102 C 1 HETATM 16 O O4' DGT . . . H 3 63.254 46.909 7.135 1 53.89 ? O4' DGT 1102 C 1 HETATM 17 C C3' DGT . . . H 3 61.25 46.874 8.542 1 55.02 ? C3' DGT 1102 C 1 HETATM 18 O O3' DGT . . . H 3 60.03 46.163 8.712 1 53.66 ? O3' DGT 1102 C 1 HETATM 19 C C2' DGT . . . H 3 62.437 46.301 9.335 1 52.87 ? C2' DGT 1102 C 1 HETATM 20 C C1' DGT . . . H 3 63.601 46.877 8.531 1 51.83 ? C1' DGT 1102 C 1 HETATM 21 N N9 DGT . . . H 3 63.995 48.27 8.916 1 48.89 ? N9 DGT 1102 C 1 HETATM 22 C C8 DGT . . . H 3 63.42 49.525 8.775 1 47.46 ? C8 DGT 1102 C 1 HETATM 23 N N7 DGT . . . H 3 64.071 50.544 9.253 1 47.33 ? N7 DGT 1102 C 1 HETATM 24 C C5 DGT . . . H 3 65.195 49.938 9.766 1 46.91 ? C5 DGT 1102 C 1 HETATM 25 C C6 DGT . . . H 3 66.368 50.457 10.453 1 46.83 ? C6 DGT 1102 C 1 HETATM 26 O O6 DGT . . . H 3 66.642 51.607 10.746 1 47.63 ? O6 DGT 1102 C 1 HETATM 27 N N1 DGT . . . H 3 67.309 49.449 10.82 1 46.19 ? N1 DGT 1102 C 1 HETATM 28 C C2 DGT . . . H 3 67.137 48.052 10.547 1 46.08 ? C2 DGT 1102 C 1 HETATM 29 N N2 DGT . . . H 3 68.062 47.169 10.924 1 45.14 ? N2 DGT 1102 C 1 HETATM 30 N N3 DGT . . . H 3 66.049 47.587 9.911 1 46.17 ? N3 DGT 1102 C 1 HETATM 31 C C4 DGT . . . H 3 65.125 48.547 9.548 1 47.37 ? C4 DGT 1102 C 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #