data_1S5F
#
_model_server_result.job_id            3MrFwGRxhrcmr76DGii9jg 
_model_server_result.datetime_utc      '2024-11-16 18:40:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1s5f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":241}' 
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_entry.id    1S5F 
#
_exptl.entry_id    1S5F 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1S5F 
_cell.length_a            60.157 
_cell.length_b            110.97 
_cell.length_c            123.554 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1S5F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PQS hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 1 1 
A,G,M 2 2 
B,C,D,E,F,H,I,J,K,L,N,O,P,Q,R 2 1 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x+1/2,-y+1,z+1/2 -1 0 0 0 -1 0 0 0 1 30.0785 110.97 61.777 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 187 A CYS 187 1_555 A SG CYS 199 A CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 B SG CYS 9 D CYS 9 1_555 B SG CYS 86 D CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf3 C SG CYS 9 E CYS 9 1_555 C SG CYS 86 E CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
disulf ? disulf4 D SG CYS 9 F CYS 9 1_555 D SG CYS 86 F CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf5 E SG CYS 9 G CYS 9 1_555 E SG CYS 86 G CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
disulf ? disulf6 F SG CYS 9 H CYS 9 1_555 F SG CYS 86 H CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc1 A O ASN 1 A ASN 1 1_555 G NA NA . A NA 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? 
metalc ? metalc2 A OG1 THR 90 A THR 90 1_555 G NA NA . A NA 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc3 A O THR 90 A THR 90 1_555 G NA NA . A NA 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? 
metalc ? metalc4 A O TYR 150 A TYR 150 1_555 G NA NA . A NA 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc5 A O LEU 153 A LEU 153 1_555 G NA NA . A NA 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? 
metalc ? metalc6 G NA NA . A NA 241 1_555 M O HOH . A HOH 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1S5F 
_atom_sites.fract_transf_matrix[1][1]    0.016623 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009011 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008094 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NA A 1 241 1 NA NA . 
H 4 GAL D 1 104 104 GAL GAL . 
I 4 GAL E 1 105 104 GAL GAL . 
J 4 GAL F 1 106 104 GAL GAL . 
K 4 GAL G 1 107 104 GAL GAL . 
L 4 GAL H 1 108 104 GAL GAL . 
M 5 HOH A 1 242 6 HOH HOH . 
M 5 HOH A 2 243 8 HOH HOH . 
M 5 HOH A 3 244 9 HOH HOH . 
M 5 HOH A 4 245 16 HOH HOH . 
M 5 HOH A 5 246 23 HOH HOH . 
M 5 HOH A 6 247 26 HOH HOH . 
M 5 HOH A 7 248 32 HOH HOH . 
M 5 HOH A 8 249 42 HOH HOH . 
M 5 HOH A 9 250 49 HOH HOH . 
M 5 HOH A 10 251 52 HOH HOH . 
M 5 HOH A 11 252 54 HOH HOH . 
M 5 HOH A 12 253 56 HOH HOH . 
M 5 HOH A 13 254 58 HOH HOH . 
M 5 HOH A 14 255 60 HOH HOH . 
N 5 HOH D 1 105 4 HOH HOH . 
N 5 HOH D 2 106 10 HOH HOH . 
N 5 HOH D 3 107 12 HOH HOH . 
N 5 HOH D 4 108 19 HOH HOH . 
N 5 HOH D 5 109 20 HOH HOH . 
N 5 HOH D 6 110 27 HOH HOH . 
N 5 HOH D 7 111 28 HOH HOH . 
O 5 HOH E 1 106 5 HOH HOH . 
O 5 HOH E 2 107 11 HOH HOH . 
O 5 HOH E 3 108 14 HOH HOH . 
O 5 HOH E 4 109 15 HOH HOH . 
O 5 HOH E 5 110 17 HOH HOH . 
O 5 HOH E 6 111 18 HOH HOH . 
O 5 HOH E 7 112 25 HOH HOH . 
O 5 HOH E 8 113 29 HOH HOH . 
O 5 HOH E 9 114 39 HOH HOH . 
O 5 HOH E 10 115 41 HOH HOH . 
O 5 HOH E 11 116 50 HOH HOH . 
O 5 HOH E 12 117 55 HOH HOH . 
P 5 HOH F 1 107 3 HOH HOH . 
P 5 HOH F 2 108 21 HOH HOH . 
P 5 HOH F 3 109 22 HOH HOH . 
P 5 HOH F 4 110 24 HOH HOH . 
P 5 HOH F 5 111 36 HOH HOH . 
P 5 HOH F 6 112 40 HOH HOH . 
P 5 HOH F 7 113 44 HOH HOH . 
P 5 HOH F 8 114 46 HOH HOH . 
P 5 HOH F 9 115 47 HOH HOH . 
P 5 HOH F 10 116 51 HOH HOH . 
P 5 HOH F 11 117 59 HOH HOH . 
Q 5 HOH G 1 108 2 HOH HOH . 
Q 5 HOH G 2 109 7 HOH HOH . 
Q 5 HOH G 3 110 30 HOH HOH . 
Q 5 HOH G 4 111 33 HOH HOH . 
Q 5 HOH G 5 112 34 HOH HOH . 
Q 5 HOH G 6 113 35 HOH HOH . 
Q 5 HOH G 7 114 48 HOH HOH . 
Q 5 HOH G 8 115 57 HOH HOH . 
R 5 HOH H 1 109 13 HOH HOH . 
R 5 HOH H 2 110 31 HOH HOH . 
R 5 HOH H 3 111 37 HOH HOH . 
R 5 HOH H 4 112 38 HOH HOH . 
R 5 HOH H 5 113 43 HOH HOH . 
R 5 HOH H 6 114 45 HOH HOH . 
R 5 HOH H 7 115 53 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         G 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               34.248 
_atom_site.Cartn_y               41.3 
_atom_site.Cartn_z               28.974 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        16.79 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           241 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              53 
_model_server_stats.parse_time_ms           47 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
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