data_1S5K # _model_server_result.job_id s9BPQ5ER3devAmWCkWUjoA _model_server_result.datetime_utc '2024-10-31 07:21:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":600}' # _entry.id 1S5K # _exptl.entry_id 1S5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1S5K _cell.length_a 62.881 _cell.length_b 62.881 _cell.length_c 157.386 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1S5K _atom_sites.fract_transf_matrix[1][1] 0.015903 _atom_sites.fract_transf_matrix[1][2] 0.009182 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 800 800 SO4 SO4 . D 3 COA A 1 600 600 COA COA . E 2 SO4 B 1 801 800 SO4 SO4 . F 3 COA B 1 601 600 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . D 3 17.654 61.823 28.476 1 24.34 ? N1A COA 600 A 1 HETATM 2 C C2A COA . . . D 3 16.963 61.938 29.655 1 23.52 ? C2A COA 600 A 1 HETATM 3 N N3A COA . . . D 3 15.935 61.201 30.035 1 23.97 ? N3A COA 600 A 1 HETATM 4 C C4A COA . . . D 3 15.527 60.212 29.144 1 22.34 ? C4A COA 600 A 1 HETATM 5 C C5A COA . . . D 3 16.166 60.02 27.914 1 23.12 ? C5A COA 600 A 1 HETATM 6 C C6A COA . . . D 3 17.279 60.879 27.578 1 24.27 ? C6A COA 600 A 1 HETATM 7 N N6A COA . . . D 3 17.909 60.696 26.351 1 24.81 ? N6A COA 600 A 1 HETATM 8 N N7A COA . . . D 3 15.592 58.972 27.172 1 21.57 ? N7A COA 600 A 1 HETATM 9 C C8A COA . . . D 3 14.617 58.515 27.924 1 21.38 ? C8A COA 600 A 1 HETATM 10 N N9A COA . . . D 3 14.573 59.246 29.098 1 22.99 ? N9A COA 600 A 1 HETATM 11 C C1B COA . . . D 3 13.656 59.021 30.168 1 23.38 ? C1B COA 600 A 1 HETATM 12 C C2B COA . . . D 3 12.164 59.302 29.896 1 26.18 ? C2B COA 600 A 1 HETATM 13 O O2B COA . . . D 3 11.912 60.72 29.82 1 28.91 ? O2B COA 600 A 1 HETATM 14 C C3B COA . . . D 3 11.745 58.718 31.214 1 26.87 ? C3B COA 600 A 1 HETATM 15 O O3B COA . . . D 3 10.433 58.647 31.522 1 32.15 ? O3B COA 600 A 1 HETATM 16 P P3B COA . . . D 3 9.511 59.862 32.085 1 31.66 ? P3B COA 600 A 1 HETATM 17 O O7A COA . . . D 3 10.09 60.437 33.355 1 33.88 ? O7A COA 600 A 1 HETATM 18 O O8A COA . . . D 3 8.193 59.176 32.278 1 33.06 ? O8A COA 600 A 1 HETATM 19 O O9A COA . . . D 3 9.515 60.848 30.958 1 34.61 ? O9A COA 600 A 1 HETATM 20 C C4B COA . . . D 3 12.326 57.337 30.994 1 25.14 ? C4B COA 600 A 1 HETATM 21 O O4B COA . . . D 3 13.668 57.662 30.573 1 23.77 ? O4B COA 600 A 1 HETATM 22 C C5B COA . . . D 3 11.575 56.351 30.035 1 20.13 ? C5B COA 600 A 1 HETATM 23 O O5B COA . . . D 3 11.947 56.564 28.683 1 17.38 ? O5B COA 600 A 1 HETATM 24 P P1A COA . . . D 3 11.555 55.626 27.44 1 15.71 ? P1A COA 600 A 1 HETATM 25 O O1A COA . . . D 3 10.666 54.493 27.815 1 18.28 ? O1A COA 600 A 1 HETATM 26 O O2A COA . . . D 3 11.013 56.456 26.396 1 17.34 ? O2A COA 600 A 1 HETATM 27 O O3A COA . . . D 3 12.943 55.096 26.976 1 15.78 ? O3A COA 600 A 1 HETATM 28 P P2A COA . . . D 3 13.404 54.698 25.565 1 17.16 ? P2A COA 600 A 1 HETATM 29 O O4A COA . . . D 3 12.405 53.958 24.799 1 17.57 ? O4A COA 600 A 1 HETATM 30 O O5A COA . . . D 3 13.998 55.86 24.765 1 14.73 ? O5A COA 600 A 1 HETATM 31 O O6A COA . . . D 3 14.681 53.683 25.756 1 19.64 ? O6A COA 600 A 1 HETATM 32 C CBP COA . . . D 3 16.908 53.131 26.245 1 19.84 ? CBP COA 600 A 1 HETATM 33 C CCP COA . . . D 3 15.683 53.893 26.723 1 17.58 ? CCP COA 600 A 1 HETATM 34 C CDP COA . . . D 3 18.022 53.228 27.31 1 16.07 ? CDP COA 600 A 1 HETATM 35 C CEP COA . . . D 3 16.488 51.602 26.139 1 19.72 ? CEP COA 600 A 1 HETATM 36 C CAP COA . . . D 3 17.42 53.679 24.832 1 20.94 ? CAP COA 600 A 1 HETATM 37 O OAP COA . . . D 3 17.962 55.016 24.915 1 21.82 ? OAP COA 600 A 1 HETATM 38 C C9P COA . . . D 3 18.496 52.817 24.184 1 21.14 ? C9P COA 600 A 1 HETATM 39 O O9P COA . . . D 3 18.238 51.855 23.511 1 21.72 ? O9P COA 600 A 1 HETATM 40 N N8P COA . . . D 3 19.773 53.248 24.481 1 20.78 ? N8P COA 600 A 1 HETATM 41 C C7P COA . . . D 3 20.95 52.654 23.845 1 22.79 ? C7P COA 600 A 1 HETATM 42 C C6P COA . . . D 3 21.237 51.247 24.395 1 22.84 ? C6P COA 600 A 1 HETATM 43 C C5P COA . . . D 3 21.427 51.326 25.891 1 22.71 ? C5P COA 600 A 1 HETATM 44 O O5P COA . . . D 3 22.076 52.206 26.375 1 23.57 ? O5P COA 600 A 1 HETATM 45 N N4P COA . . . D 3 20.783 50.36 26.635 1 21.79 ? N4P COA 600 A 1 HETATM 46 C C3P COA . . . D 3 20.861 50.336 28.126 1 22.32 ? C3P COA 600 A 1 HETATM 47 C C2P COA . . . D 3 21.858 49.357 28.797 1 21.76 ? C2P COA 600 A 1 HETATM 48 S S1P COA . . . D 3 21.753 47.588 28.253 1 24.99 ? S1P COA 600 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #