data_1S5K # _model_server_result.job_id Uz_0UHxeGcFt9gEMjb5wog _model_server_result.datetime_utc '2024-10-31 07:26:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 1S5K # _exptl.entry_id 1S5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1S5K _cell.length_a 62.881 _cell.length_b 62.881 _cell.length_c 157.386 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 1S5K _atom_sites.fract_transf_matrix[1][1] 0.015903 _atom_sites.fract_transf_matrix[1][2] 0.009182 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018363 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006354 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 800 800 SO4 SO4 . D 3 COA A 1 600 600 COA COA . E 2 SO4 B 1 801 800 SO4 SO4 . F 3 COA B 1 601 600 COA COA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 3 48.51 47.891 49.632 1 26.37 ? N1A COA 601 B 1 HETATM 2 C C2A COA . . . F 3 49.04 47.3 48.478 1 25.11 ? C2A COA 601 B 1 HETATM 3 N N3A COA . . . F 3 49.1 45.991 48.189 1 24.51 ? N3A COA 601 B 1 HETATM 4 C C4A COA . . . F 3 48.577 45.145 49.144 1 24.77 ? C4A COA 601 B 1 HETATM 5 C C5A COA . . . F 3 47.993 45.636 50.363 1 24.72 ? C5A COA 601 B 1 HETATM 6 C C6A COA . . . F 3 47.983 47.087 50.586 1 23.98 ? C6A COA 601 B 1 HETATM 7 N N6A COA . . . F 3 47.466 47.572 51.705 1 25.4 ? N6A COA 601 B 1 HETATM 8 N N7A COA . . . F 3 47.537 44.595 51.165 1 22.05 ? N7A COA 601 B 1 HETATM 9 C C8A COA . . . F 3 47.83 43.502 50.481 1 24.3 ? C8A COA 601 B 1 HETATM 10 N N9A COA . . . F 3 48.448 43.829 49.29 1 24.82 ? N9A COA 601 B 1 HETATM 11 C C1B COA . . . F 3 48.997 42.911 48.304 1 27.33 ? C1B COA 601 B 1 HETATM 12 C C2B COA . . . F 3 50.132 42.208 48.995 1 28.5 ? C2B COA 601 B 1 HETATM 13 O O2B COA . . . F 3 51.273 43.047 48.817 1 30.92 ? O2B COA 601 B 1 HETATM 14 C C3B COA . . . F 3 50.297 40.933 48.244 1 30.72 ? C3B COA 601 B 1 HETATM 15 O O3B COA . . . F 3 51.236 41.135 47.234 1 36.71 ? O3B COA 601 B 1 HETATM 16 P P3B COA . . . F 3 52.138 39.958 46.603 1 38.75 ? P3B COA 601 B 1 HETATM 17 O O7A COA . . . F 3 51.199 38.872 46.243 1 41.64 ? O7A COA 601 B 1 HETATM 18 O O8A COA . . . F 3 53.145 39.527 47.585 1 40.56 ? O8A COA 601 B 1 HETATM 19 O O9A COA . . . F 3 52.678 40.664 45.41 1 38.51 ? O9A COA 601 B 1 HETATM 20 C C4B COA . . . F 3 48.859 40.62 47.782 1 28.43 ? C4B COA 601 B 1 HETATM 21 O O4B COA . . . F 3 48.15 41.895 47.773 1 29.18 ? O4B COA 601 B 1 HETATM 22 C C5B COA . . . F 3 48.045 39.636 48.668 1 26.16 ? C5B COA 601 B 1 HETATM 23 O O5B COA . . . F 3 48.093 40.133 50.022 1 24.66 ? O5B COA 601 B 1 HETATM 24 P P1A COA . . . F 3 47.589 39.333 51.345 1 24.82 ? P1A COA 601 B 1 HETATM 25 O O1A COA . . . F 3 47.331 37.91 51.097 1 26.05 ? O1A COA 601 B 1 HETATM 26 O O2A COA . . . F 3 48.574 39.573 52.44 1 25.04 ? O2A COA 601 B 1 HETATM 27 O O3A COA . . . F 3 46.272 40.137 51.665 1 22.67 ? O3A COA 601 B 1 HETATM 28 P P2A COA . . . F 3 45.604 40.412 53.06 1 18.97 ? P2A COA 601 B 1 HETATM 29 O O4A COA . . . F 3 45.7 39.287 54.023 1 19.12 ? O4A COA 601 B 1 HETATM 30 O O5A COA . . . F 3 46.112 41.684 53.699 1 18.56 ? O5A COA 601 B 1 HETATM 31 O O6A COA . . . F 3 44.065 40.706 52.754 1 20.32 ? O6A COA 601 B 1 HETATM 32 C CBP COA . . . F 3 42.284 42.136 52.097 1 21.04 ? CBP COA 601 B 1 HETATM 33 C CCP COA . . . F 3 43.695 41.677 51.781 1 19.5 ? CCP COA 601 B 1 HETATM 34 C CDP COA . . . F 3 41.753 42.869 50.86 1 20.72 ? CDP COA 601 B 1 HETATM 35 C CEP COA . . . F 3 41.367 40.874 52.277 1 21.29 ? CEP COA 601 B 1 HETATM 36 C CAP COA . . . F 3 42.263 43.034 53.396 1 21.86 ? CAP COA 601 B 1 HETATM 37 O OAP COA . . . F 3 42.887 44.312 53.209 1 22.58 ? OAP COA 601 B 1 HETATM 38 C C9P COA . . . F 3 40.917 43.202 54.093 1 21.9 ? C9P COA 601 B 1 HETATM 39 O O9P COA . . . F 3 40.411 42.304 54.72 1 21.98 ? O9P COA 601 B 1 HETATM 40 N N8P COA . . . F 3 40.295 44.395 53.852 1 21.37 ? N8P COA 601 B 1 HETATM 41 C C7P COA . . . F 3 38.887 44.668 54.296 1 21.69 ? C7P COA 601 B 1 HETATM 42 C C6P COA . . . F 3 37.764 43.923 53.454 1 23.8 ? C6P COA 601 B 1 HETATM 43 C C5P COA . . . F 3 37.869 44.183 51.956 1 26.9 ? C5P COA 601 B 1 HETATM 44 O O5P COA . . . F 3 38.406 45.192 51.511 1 29.13 ? O5P COA 601 B 1 HETATM 45 N N4P COA . . . F 3 37.565 43.102 51.147 1 28.88 ? N4P COA 601 B 1 HETATM 46 C C3P COA . . . F 3 37.743 43.155 49.657 1 30.64 ? C3P COA 601 B 1 HETATM 47 C C2P COA . . . F 3 36.492 42.814 48.762 1 33.16 ? C2P COA 601 B 1 HETATM 48 S S1P COA . . . F 3 35.028 42.185 49.705 1 37.88 ? S1P COA 601 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 34 _model_server_stats.element_count 48 #