data_1S5X # _model_server_result.job_id dcBq5DDlDlyM4Ar2k1zrTQ _model_server_result.datetime_utc '2024-10-24 00:19:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 1S5X # _exptl.entry_id 1S5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.48 _cell.angle_gamma 90 _cell.entry_id 1S5X _cell.length_a 108.516 _cell.length_b 65.095 _cell.length_c 55.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 C FE HEM . A HEM 200 1_555 E O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc3 B NE2 HIS 63 B HIS 63 1_555 D FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 D FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 135 n n CHA C4D HEM doub 136 n n CHA HHA HEM sing 137 n n CHB C4A HEM sing 138 n n CHB C1B HEM doub 139 n n CHB HHB HEM sing 140 n n CHC C4B HEM sing 141 n n CHC C1C HEM doub 142 n n CHC HHC HEM sing 143 n n CHD C4C HEM doub 144 n n CHD C1D HEM sing 145 n n CHD HHD HEM sing 146 n n C1A C2A HEM doub 147 n y C1A NA HEM sing 148 n y C2A C3A HEM sing 149 n y C2A CAA HEM sing 150 n n C3A C4A HEM doub 151 n y C3A CMA HEM sing 152 n n C4A NA HEM sing 153 n y CMA HMA HEM sing 154 n n CMA HMAA HEM sing 155 n n CMA HMAB HEM sing 156 n n CAA CBA HEM sing 157 n n CAA HAA HEM sing 158 n n CAA HAAA HEM sing 159 n n CBA CGA HEM sing 160 n n CBA HBA HEM sing 161 n n CBA HBAA HEM sing 162 n n CGA O1A HEM doub 163 n n CGA O2A HEM sing 164 n n C1B C2B HEM sing 165 n n C1B NB HEM sing 166 n n C2B C3B HEM doub 167 n n C2B CMB HEM sing 168 n n C3B C4B HEM sing 169 n n C3B CAB HEM sing 170 n n C4B NB HEM doub 171 n n CMB HMB HEM sing 172 n n CMB HMBA HEM sing 173 n n CMB HMBB HEM sing 174 n n CAB CBB HEM doub 175 n n CAB HAB HEM sing 176 n n CBB HBB HEM sing 177 n n CBB HBBA HEM sing 178 n n C1C C2C HEM sing 179 n y C1C NC HEM sing 180 n y C2C C3C HEM doub 181 n y C2C CMC HEM sing 182 n n C3C C4C HEM sing 183 n y C3C CAC HEM sing 184 n n C4C NC HEM sing 185 n y CMC HMC HEM sing 186 n n CMC HMCA HEM sing 187 n n CMC HMCB HEM sing 188 n n CAC CBC HEM doub 189 n n CAC HAC HEM sing 190 n n CBC HBC HEM sing 191 n n CBC HBCA HEM sing 192 n n C1D C2D HEM sing 193 n n C1D ND HEM doub 194 n n C2D C3D HEM doub 195 n n C2D CMD HEM sing 196 n n C3D C4D HEM sing 197 n n C3D CAD HEM sing 198 n n C4D ND HEM sing 199 n n CMD HMD HEM sing 200 n n CMD HMDA HEM sing 201 n n CMD HMDB HEM sing 202 n n CAD CBD HEM sing 203 n n CAD HAD HEM sing 204 n n CAD HADA HEM sing 205 n n CBD CGD HEM sing 206 n n CBD HBD HEM sing 207 n n CBD HBDA HEM sing 208 n n CGD O1D HEM doub 209 n n CGD O2D HEM sing 210 n n O2A H2A HEM sing 211 n n O2D H2D HEM sing 212 n n FE NA HEM sing 213 n n FE NB HEM sing 214 n n FE NC HEM sing 215 n n FE ND HEM sing 216 n n # _atom_sites.entry_id 1S5X _atom_sites.fract_transf_matrix[1][1] 0.00922 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 200 200 HEM HEM . D 3 HEM B 1 400 400 HEM HEM . E 4 HOH A 1 500 500 HOH HOH . E 4 HOH A 2 502 502 HOH HOH . E 4 HOH A 3 504 504 HOH HOH . E 4 HOH A 4 506 506 HOH HOH . E 4 HOH A 5 507 507 HOH HOH . E 4 HOH A 6 508 508 HOH HOH . E 4 HOH A 7 510 510 HOH HOH . E 4 HOH A 8 512 512 HOH HOH . E 4 HOH A 9 513 513 HOH HOH . E 4 HOH A 10 519 519 HOH HOH . E 4 HOH A 11 521 521 HOH HOH . E 4 HOH A 12 525 525 HOH HOH . E 4 HOH A 13 526 526 HOH HOH . E 4 HOH A 14 529 529 HOH HOH . E 4 HOH A 15 530 530 HOH HOH . F 4 HOH B 1 501 501 HOH HOH . F 4 HOH B 2 503 503 HOH HOH . F 4 HOH B 3 505 505 HOH HOH . F 4 HOH B 4 511 511 HOH HOH . F 4 HOH B 5 516 516 HOH HOH . F 4 HOH B 6 517 517 HOH HOH . F 4 HOH B 7 523 523 HOH HOH . F 4 HOH B 8 528 528 HOH HOH . F 4 HOH B 9 532 532 HOH HOH . F 4 HOH B 10 534 534 HOH HOH . F 4 HOH B 11 535 535 HOH HOH . F 4 HOH B 12 536 536 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 5.154 -9.642 21.06 1 32.57 ? CHA HEM 200 A 1 HETATM 2 C CHB HEM . . . C 3 7.336 -11.343 17.083 1 25.92 ? CHB HEM 200 A 1 HETATM 3 C CHC HEM . . . C 3 5.899 -7.498 14.572 1 27.77 ? CHC HEM 200 A 1 HETATM 4 C CHD HEM . . . C 3 3.983 -5.657 18.607 1 29.71 ? CHD HEM 200 A 1 HETATM 5 C C1A HEM . . . C 3 5.854 -10.517 20.196 1 31.31 ? C1A HEM 200 A 1 HETATM 6 C C2A HEM . . . C 3 6.505 -11.745 20.611 1 33.27 ? C2A HEM 200 A 1 HETATM 7 C C3A HEM . . . C 3 7.148 -12.209 19.506 1 31.12 ? C3A HEM 200 A 1 HETATM 8 C C4A HEM . . . C 3 6.878 -11.256 18.402 1 28.71 ? C4A HEM 200 A 1 HETATM 9 C CMA HEM . . . C 3 8.027 -13.443 19.398 1 32.26 ? CMA HEM 200 A 1 HETATM 10 C CAA HEM . . . C 3 6.565 -12.322 22.021 1 38.9 ? CAA HEM 200 A 1 HETATM 11 C CBA HEM . . . C 3 5.371 -13.238 22.398 1 47.73 ? CBA HEM 200 A 1 HETATM 12 C CGA HEM . . . C 3 5.051 -13.225 23.779 1 51.4 ? CGA HEM 200 A 1 HETATM 13 O O1A HEM . . . C 3 4.499 -12.088 24.186 1 54.09 ? O1A HEM 200 A 1 HETATM 14 O O2A HEM . . . C 3 5.276 -14.219 24.553 1 53.34 ? O2A HEM 200 A 1 HETATM 15 C C1B HEM . . . C 3 7.116 -10.475 16.016 1 25.95 ? C1B HEM 200 A 1 HETATM 16 C C2B HEM . . . C 3 7.584 -10.69 14.628 1 26.4 ? C2B HEM 200 A 1 HETATM 17 C C3B HEM . . . C 3 7.193 -9.611 13.908 1 25.6 ? C3B HEM 200 A 1 HETATM 18 C C4B HEM . . . C 3 6.47 -8.754 14.858 1 26.34 ? C4B HEM 200 A 1 HETATM 19 C CMB HEM . . . C 3 8.351 -11.902 14.104 1 28.39 ? CMB HEM 200 A 1 HETATM 20 C CAB HEM . . . C 3 7.453 -9.331 12.43 1 26.84 ? CAB HEM 200 A 1 HETATM 21 C CBB HEM . . . C 3 8.886 -8.881 12.007 1 28.15 ? CBB HEM 200 A 1 HETATM 22 C C1C HEM . . . C 3 5.215 -6.611 15.42 1 27.26 ? C1C HEM 200 A 1 HETATM 23 C C2C HEM . . . C 3 4.727 -5.258 15.072 1 27.61 ? C2C HEM 200 A 1 HETATM 24 C C3C HEM . . . C 3 4.2 -4.746 16.244 1 26.86 ? C3C HEM 200 A 1 HETATM 25 C C4C HEM . . . C 3 4.355 -5.788 17.244 1 27.71 ? C4C HEM 200 A 1 HETATM 26 C CMC HEM . . . C 3 4.861 -4.6 13.687 1 25.24 ? CMC HEM 200 A 1 HETATM 27 C CAC HEM . . . C 3 3.548 -3.382 16.592 1 21.6 ? CAC HEM 200 A 1 HETATM 28 C CBC HEM . . . C 3 4.177 -2.084 16.133 1 24.81 ? CBC HEM 200 A 1 HETATM 29 C C1D HEM . . . C 3 4.118 -6.543 19.678 1 31.28 ? C1D HEM 200 A 1 HETATM 30 C C2D HEM . . . C 3 3.726 -6.249 21.056 1 32.13 ? C2D HEM 200 A 1 HETATM 31 C C3D HEM . . . C 3 4.082 -7.398 21.743 1 33.41 ? C3D HEM 200 A 1 HETATM 32 C C4D HEM . . . C 3 4.659 -8.351 20.758 1 32.07 ? C4D HEM 200 A 1 HETATM 33 C CMD HEM . . . C 3 3.094 -4.968 21.594 1 32.21 ? CMD HEM 200 A 1 HETATM 34 C CAD HEM . . . C 3 3.939 -7.639 23.24 1 35.75 ? CAD HEM 200 A 1 HETATM 35 C CBD HEM . . . C 3 5.162 -6.819 23.934 1 40.89 ? CBD HEM 200 A 1 HETATM 36 C CGD HEM . . . C 3 5.447 -7.183 25.226 1 41.9 ? CGD HEM 200 A 1 HETATM 37 O O1D HEM . . . C 3 6.269 -8.148 25.391 1 45.88 ? O1D HEM 200 A 1 HETATM 38 O O2D HEM . . . C 3 4.843 -6.609 26.161 1 43.46 ? O2D HEM 200 A 1 HETATM 39 N NA HEM . . . C 3 6.092 -10.201 18.846 1 30.12 ? NA HEM 200 A 1 HETATM 40 N NB HEM . . . C 3 6.393 -9.287 16.156 1 26.61 ? NB HEM 200 A 1 HETATM 41 N NC HEM . . . C 3 4.965 -6.898 16.752 1 27.27 ? NC HEM 200 A 1 HETATM 42 N ND HEM . . . C 3 4.701 -7.802 19.496 1 30.2 ? ND HEM 200 A 1 HETATM 43 FE FE HEM . . . C 3 5.465 -8.518 17.784 1 28.46 ? FE HEM 200 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 43 #