data_1S5X
#
_model_server_result.job_id            N10yupTggLMysmo5Bpo4ew 
_model_server_result.datetime_utc      '2024-10-24 00:23:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1s5x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":400}' 
#
_entry.id    1S5X 
#
_exptl.entry_id    1S5X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          113.48 
_cell.angle_gamma         90 
_cell.entry_id            1S5X 
_cell.length_a            108.516 
_cell.length_b            65.095 
_cell.length_c            55.75 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1S5X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A NE2 HIS 89 A HIS 88 1_555 C FE HEM . A HEM 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc2 C FE HEM . A HEM 200 1_555 E O HOH . A HOH 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc3 B NE2 HIS 63 B HIS 63 1_555 D FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
metalc ? metalc4 B NE2 HIS 92 B HIS 92 1_555 D FE HEM . B HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 135 n n 
CHA C4D HEM doub 136 n n 
CHA HHA HEM sing 137 n n 
CHB C4A HEM sing 138 n n 
CHB C1B HEM doub 139 n n 
CHB HHB HEM sing 140 n n 
CHC C4B HEM sing 141 n n 
CHC C1C HEM doub 142 n n 
CHC HHC HEM sing 143 n n 
CHD C4C HEM doub 144 n n 
CHD C1D HEM sing 145 n n 
CHD HHD HEM sing 146 n n 
C1A C2A HEM doub 147 n y 
C1A NA HEM sing 148 n y 
C2A C3A HEM sing 149 n y 
C2A CAA HEM sing 150 n n 
C3A C4A HEM doub 151 n y 
C3A CMA HEM sing 152 n n 
C4A NA HEM sing 153 n y 
CMA HMA HEM sing 154 n n 
CMA HMAA HEM sing 155 n n 
CMA HMAB HEM sing 156 n n 
CAA CBA HEM sing 157 n n 
CAA HAA HEM sing 158 n n 
CAA HAAA HEM sing 159 n n 
CBA CGA HEM sing 160 n n 
CBA HBA HEM sing 161 n n 
CBA HBAA HEM sing 162 n n 
CGA O1A HEM doub 163 n n 
CGA O2A HEM sing 164 n n 
C1B C2B HEM sing 165 n n 
C1B NB HEM sing 166 n n 
C2B C3B HEM doub 167 n n 
C2B CMB HEM sing 168 n n 
C3B C4B HEM sing 169 n n 
C3B CAB HEM sing 170 n n 
C4B NB HEM doub 171 n n 
CMB HMB HEM sing 172 n n 
CMB HMBA HEM sing 173 n n 
CMB HMBB HEM sing 174 n n 
CAB CBB HEM doub 175 n n 
CAB HAB HEM sing 176 n n 
CBB HBB HEM sing 177 n n 
CBB HBBA HEM sing 178 n n 
C1C C2C HEM sing 179 n y 
C1C NC HEM sing 180 n y 
C2C C3C HEM doub 181 n y 
C2C CMC HEM sing 182 n n 
C3C C4C HEM sing 183 n y 
C3C CAC HEM sing 184 n n 
C4C NC HEM sing 185 n y 
CMC HMC HEM sing 186 n n 
CMC HMCA HEM sing 187 n n 
CMC HMCB HEM sing 188 n n 
CAC CBC HEM doub 189 n n 
CAC HAC HEM sing 190 n n 
CBC HBC HEM sing 191 n n 
CBC HBCA HEM sing 192 n n 
C1D C2D HEM sing 193 n n 
C1D ND HEM doub 194 n n 
C2D C3D HEM doub 195 n n 
C2D CMD HEM sing 196 n n 
C3D C4D HEM sing 197 n n 
C3D CAD HEM sing 198 n n 
C4D ND HEM sing 199 n n 
CMD HMD HEM sing 200 n n 
CMD HMDA HEM sing 201 n n 
CMD HMDB HEM sing 202 n n 
CAD CBD HEM sing 203 n n 
CAD HAD HEM sing 204 n n 
CAD HADA HEM sing 205 n n 
CBD CGD HEM sing 206 n n 
CBD HBD HEM sing 207 n n 
CBD HBDA HEM sing 208 n n 
CGD O1D HEM doub 209 n n 
CGD O2D HEM sing 210 n n 
O2A H2A HEM sing 211 n n 
O2D H2D HEM sing 212 n n 
FE NA HEM sing 213 n n 
FE NB HEM sing 214 n n 
FE NC HEM sing 215 n n 
FE ND HEM sing 216 n n 
#
_atom_sites.entry_id                     1S5X 
_atom_sites.fract_transf_matrix[1][1]    0.00922 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01536 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01956 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HEM A 1 200 200 HEM HEM . 
D 3 HEM B 1 400 400 HEM HEM . 
E 4 HOH A 1 500 500 HOH HOH . 
E 4 HOH A 2 502 502 HOH HOH . 
E 4 HOH A 3 504 504 HOH HOH . 
E 4 HOH A 4 506 506 HOH HOH . 
E 4 HOH A 5 507 507 HOH HOH . 
E 4 HOH A 6 508 508 HOH HOH . 
E 4 HOH A 7 510 510 HOH HOH . 
E 4 HOH A 8 512 512 HOH HOH . 
E 4 HOH A 9 513 513 HOH HOH . 
E 4 HOH A 10 519 519 HOH HOH . 
E 4 HOH A 11 521 521 HOH HOH . 
E 4 HOH A 12 525 525 HOH HOH . 
E 4 HOH A 13 526 526 HOH HOH . 
E 4 HOH A 14 529 529 HOH HOH . 
E 4 HOH A 15 530 530 HOH HOH . 
F 4 HOH B 1 501 501 HOH HOH . 
F 4 HOH B 2 503 503 HOH HOH . 
F 4 HOH B 3 505 505 HOH HOH . 
F 4 HOH B 4 511 511 HOH HOH . 
F 4 HOH B 5 516 516 HOH HOH . 
F 4 HOH B 6 517 517 HOH HOH . 
F 4 HOH B 7 523 523 HOH HOH . 
F 4 HOH B 8 528 528 HOH HOH . 
F 4 HOH B 9 532 532 HOH HOH . 
F 4 HOH B 10 534 534 HOH HOH . 
F 4 HOH B 11 535 535 HOH HOH . 
F 4 HOH B 12 536 536 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 3 14.378 10.511 -17.251 1 38.43 ? CHA HEM 400 B 1 
HETATM 2 C CHB HEM . . . D 3 14.52 12.188 -12.791 1 36.59 ? CHB HEM 400 B 1 
HETATM 3 C CHC HEM . . . D 3 12.316 8.227 -11.27 1 34.71 ? CHC HEM 400 B 1 
HETATM 4 C CHD HEM . . . D 3 12.388 6.353 -15.728 1 36.49 ? CHD HEM 400 B 1 
HETATM 5 C C1A HEM . . . D 3 14.62 11.383 -16.204 1 37.99 ? C1A HEM 400 B 1 
HETATM 6 C C2A HEM . . . D 3 15.286 12.676 -16.262 1 39.96 ? C2A HEM 400 B 1 
HETATM 7 C C3A HEM . . . D 3 15.348 13.145 -14.965 1 38.78 ? C3A HEM 400 B 1 
HETATM 8 C C4A HEM . . . D 3 14.705 12.127 -14.154 1 37.23 ? C4A HEM 400 B 1 
HETATM 9 C CMA HEM . . . D 3 15.975 14.415 -14.44 1 39.34 ? CMA HEM 400 B 1 
HETATM 10 C CAA HEM . . . D 3 15.858 13.337 -17.514 1 41.68 ? CAA HEM 400 B 1 
HETATM 11 C CBA HEM . . . D 3 14.743 14.188 -18.193 1 46.45 ? CBA HEM 400 B 1 
HETATM 12 C CGA HEM . . . D 3 14.999 14.745 -19.478 1 49.06 ? CGA HEM 400 B 1 
HETATM 13 O O1A HEM . . . D 3 14.194 15.731 -19.888 1 51.06 ? O1A HEM 400 B 1 
HETATM 14 O O2A HEM . . . D 3 15.96 14.362 -20.188 1 49.78 ? O2A HEM 400 B 1 
HETATM 15 C C1B HEM . . . D 3 13.902 11.286 -11.963 1 34.83 ? C1B HEM 400 B 1 
HETATM 16 C C2B HEM . . . D 3 13.658 11.564 -10.551 1 35.87 ? C2B HEM 400 B 1 
HETATM 17 C C3B HEM . . . D 3 13.003 10.439 -10.103 1 34.52 ? C3B HEM 400 B 1 
HETATM 18 C C4B HEM . . . D 3 12.89 9.507 -11.259 1 35.22 ? C4B HEM 400 B 1 
HETATM 19 C CMB HEM . . . D 3 14.028 12.866 -9.726 1 35.45 ? CMB HEM 400 B 1 
HETATM 20 C CAB HEM . . . D 3 12.495 10.317 -8.669 1 33.54 ? CAB HEM 400 B 1 
HETATM 21 C CBB HEM . . . D 3 12.892 9.254 -7.671 1 34.83 ? CBB HEM 400 B 1 
HETATM 22 C C1C HEM . . . D 3 12.146 7.324 -12.283 1 35.45 ? C1C HEM 400 B 1 
HETATM 23 C C2C HEM . . . D 3 11.6 5.952 -12.188 1 36.97 ? C2C HEM 400 B 1 
HETATM 24 C C3C HEM . . . D 3 11.633 5.442 -13.469 1 36.62 ? C3C HEM 400 B 1 
HETATM 25 C C4C HEM . . . D 3 12.175 6.453 -14.333 1 36.68 ? C4C HEM 400 B 1 
HETATM 26 C CMC HEM . . . D 3 11.121 5.251 -10.907 1 34.07 ? CMC HEM 400 B 1 
HETATM 27 C CAC HEM . . . D 3 11.181 4.044 -13.939 1 36.44 ? CAC HEM 400 B 1 
HETATM 28 C CBC HEM . . . D 3 12.002 2.854 -13.34 1 39.89 ? CBC HEM 400 B 1 
HETATM 29 C C1D HEM . . . D 3 12.926 7.321 -16.598 1 36.85 ? C1D HEM 400 B 1 
HETATM 30 C C2D HEM . . . D 3 13.187 7.142 -18.04 1 37.63 ? C2D HEM 400 B 1 
HETATM 31 C C3D HEM . . . D 3 13.773 8.312 -18.448 1 37.57 ? C3D HEM 400 B 1 
HETATM 32 C C4D HEM . . . D 3 13.82 9.204 -17.278 1 38.2 ? C4D HEM 400 B 1 
HETATM 33 C CMD HEM . . . D 3 12.875 5.858 -18.818 1 36.93 ? CMD HEM 400 B 1 
HETATM 34 C CAD HEM . . . D 3 14.342 8.742 -19.774 1 39.73 ? CAD HEM 400 B 1 
HETATM 35 C CBD HEM . . . D 3 15.841 8.218 -20.055 1 44.81 ? CBD HEM 400 B 1 
HETATM 36 C CGD HEM . . . D 3 16.976 8.911 -19.523 1 47.3 ? CGD HEM 400 B 1 
HETATM 37 O O1D HEM . . . D 3 17.07 10.197 -19.614 1 51.37 ? O1D HEM 400 B 1 
HETATM 38 O O2D HEM . . . D 3 17.984 8.3 -19.032 1 49.46 ? O2D HEM 400 B 1 
HETATM 39 N NA HEM . . . D 3 14.285 11.045 -14.929 1 38.36 ? NA HEM 400 B 1 
HETATM 40 N NB HEM . . . D 3 13.407 10.074 -12.417 1 35.62 ? NB HEM 400 B 1 
HETATM 41 N NC HEM . . . D 3 12.521 7.603 -13.606 1 37.38 ? NC HEM 400 B 1 
HETATM 42 N ND HEM . . . D 3 13.358 8.572 -16.16 1 37.35 ? ND HEM 400 B 1 
HETATM 43 FE FE HEM . . . D 3 13.398 9.31 -14.305 1 36.43 ? FE HEM 400 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           327 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#