data_1S5Y # _model_server_result.job_id muhFQF0uPs2m0RUXT4fyVQ _model_server_result.datetime_utc '2024-10-23 22:28:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":200}' # _entry.id 1S5Y # _exptl.entry_id 1S5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.06 _cell.angle_beta 69.79 _cell.angle_gamma 84.17 _cell.entry_id 1S5Y _cell.length_a 55.993 _cell.length_b 62.98 _cell.length_c 63.502 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E FE HEM . A HEM 200 1_555 A NE2 HIS 89 A HIS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 E FE HEM . A HEM 200 1_555 I O HOH . A HOH 850 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 F FE HEM . B HEM 400 1_555 B NE2 HIS 63 B HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 F FE HEM . B HEM 400 1_555 B NE2 HIS 92 B HIS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 G FE HEM . C HEM 600 1_555 C NE2 HIS 89 C HIS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 G FE HEM . C HEM 600 1_555 K O HOH . C HOH 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc7 H FE HEM . D HEM 800 1_555 D NE2 HIS 63 D HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 H FE HEM . D HEM 800 1_555 D NE2 HIS 92 D HIS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 C C ACE 1 C ACE 0 1_555 C N SER 2 C SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 1S5Y _atom_sites.fract_transf_matrix[1][1] 0.01786 _atom_sites.fract_transf_matrix[1][2] -0.00182 _atom_sites.fract_transf_matrix[1][3] -0.00634 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01596 _atom_sites.fract_transf_matrix[2][3] -0.0033 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 200 200 HEM HEM . F 3 HEM B 1 400 400 HEM HEM . G 3 HEM C 1 600 600 HEM HEM . H 3 HEM D 1 800 800 HEM HEM . I 4 HOH A 1 850 850 HOH HOH . I 4 HOH A 2 1002 1002 HOH HOH . I 4 HOH A 3 1007 1007 HOH HOH . I 4 HOH A 4 1009 1009 HOH HOH . I 4 HOH A 5 1010 1010 HOH HOH . I 4 HOH A 6 1012 1012 HOH HOH . I 4 HOH A 7 1014 1014 HOH HOH . I 4 HOH A 8 1017 1017 HOH HOH . I 4 HOH A 9 1018 1018 HOH HOH . I 4 HOH A 10 1019 1019 HOH HOH . I 4 HOH A 11 1025 1025 HOH HOH . I 4 HOH A 12 1026 1026 HOH HOH . I 4 HOH A 13 1032 1032 HOH HOH . I 4 HOH A 14 1033 1033 HOH HOH . I 4 HOH A 15 1042 1042 HOH HOH . I 4 HOH A 16 1043 1043 HOH HOH . I 4 HOH A 17 1044 1044 HOH HOH . I 4 HOH A 18 1045 1045 HOH HOH . I 4 HOH A 19 1047 1047 HOH HOH . I 4 HOH A 20 1054 1054 HOH HOH . I 4 HOH A 21 1057 1057 HOH HOH . I 4 HOH A 22 1059 1059 HOH HOH . I 4 HOH A 23 1064 1064 HOH HOH . I 4 HOH A 24 1066 1066 HOH HOH . I 4 HOH A 25 1073 1073 HOH HOH . I 4 HOH A 26 1075 1075 HOH HOH . I 4 HOH A 27 1076 1076 HOH HOH . I 4 HOH A 28 1081 1081 HOH HOH . I 4 HOH A 29 1082 1082 HOH HOH . J 4 HOH B 1 1004 1004 HOH HOH . J 4 HOH B 2 1008 1008 HOH HOH . J 4 HOH B 3 1029 1029 HOH HOH . J 4 HOH B 4 1030 1030 HOH HOH . J 4 HOH B 5 1031 1031 HOH HOH . J 4 HOH B 6 1034 1034 HOH HOH . J 4 HOH B 7 1039 1039 HOH HOH . J 4 HOH B 8 1041 1041 HOH HOH . J 4 HOH B 9 1051 1051 HOH HOH . J 4 HOH B 10 1056 1056 HOH HOH . J 4 HOH B 11 1061 1061 HOH HOH . J 4 HOH B 12 1065 1065 HOH HOH . J 4 HOH B 13 1068 1068 HOH HOH . J 4 HOH B 14 1069 1069 HOH HOH . J 4 HOH B 15 1070 1070 HOH HOH . J 4 HOH B 16 1074 1074 HOH HOH . J 4 HOH B 17 1080 1080 HOH HOH . K 4 HOH C 1 900 900 HOH HOH . K 4 HOH C 2 1003 1003 HOH HOH . K 4 HOH C 3 1011 1011 HOH HOH . K 4 HOH C 4 1015 1015 HOH HOH . K 4 HOH C 5 1022 1022 HOH HOH . K 4 HOH C 6 1027 1027 HOH HOH . K 4 HOH C 7 1035 1035 HOH HOH . K 4 HOH C 8 1036 1036 HOH HOH . K 4 HOH C 9 1038 1038 HOH HOH . K 4 HOH C 10 1048 1048 HOH HOH . K 4 HOH C 11 1050 1050 HOH HOH . K 4 HOH C 12 1052 1052 HOH HOH . K 4 HOH C 13 1053 1053 HOH HOH . K 4 HOH C 14 1055 1055 HOH HOH . K 4 HOH C 15 1062 1062 HOH HOH . K 4 HOH C 16 1072 1072 HOH HOH . K 4 HOH C 17 1077 1077 HOH HOH . L 4 HOH D 1 1006 1006 HOH HOH . L 4 HOH D 2 1013 1013 HOH HOH . L 4 HOH D 3 1016 1016 HOH HOH . L 4 HOH D 4 1020 1020 HOH HOH . L 4 HOH D 5 1021 1021 HOH HOH . L 4 HOH D 6 1023 1023 HOH HOH . L 4 HOH D 7 1024 1024 HOH HOH . L 4 HOH D 8 1028 1028 HOH HOH . L 4 HOH D 9 1037 1037 HOH HOH . L 4 HOH D 10 1040 1040 HOH HOH . L 4 HOH D 11 1046 1046 HOH HOH . L 4 HOH D 12 1049 1049 HOH HOH . L 4 HOH D 13 1058 1058 HOH HOH . L 4 HOH D 14 1060 1060 HOH HOH . L 4 HOH D 15 1063 1063 HOH HOH . L 4 HOH D 16 1067 1067 HOH HOH . L 4 HOH D 17 1071 1071 HOH HOH . L 4 HOH D 18 1078 1078 HOH HOH . L 4 HOH D 19 1079 1079 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . E 3 17.142 -16.351 -2.588 1 25.21 ? CHA HEM 200 A 1 HETATM 2 C CHB HEM . . . E 3 12.636 -17.813 -1.448 1 22.76 ? CHB HEM 200 A 1 HETATM 3 C CHC HEM . . . E 3 10.988 -13.454 -2.506 1 19.51 ? CHC HEM 200 A 1 HETATM 4 C CHD HEM . . . E 3 15.372 -12.079 -3.753 1 22.22 ? CHD HEM 200 A 1 HETATM 5 C C1A HEM . . . E 3 16.085 -17.17 -2.126 1 25.65 ? C1A HEM 200 A 1 HETATM 6 C C2A HEM . . . E 3 16.2 -18.585 -1.778 1 27.08 ? C2A HEM 200 A 1 HETATM 7 C C3A HEM . . . E 3 14.924 -19.005 -1.505 1 25.38 ? C3A HEM 200 A 1 HETATM 8 C C4A HEM . . . E 3 14.05 -17.831 -1.648 1 24.36 ? C4A HEM 200 A 1 HETATM 9 C CMA HEM . . . E 3 14.417 -20.391 -1.166 1 24.5 ? CMA HEM 200 A 1 HETATM 10 C CAA HEM . . . E 3 17.461 -19.484 -1.832 1 32.1 ? CAA HEM 200 A 1 HETATM 11 C CBA HEM . . . E 3 18.786 -19.28 -1.021 1 38.17 ? CBA HEM 200 A 1 HETATM 12 C CGA HEM . . . E 3 19.282 -20.37 -0.223 1 41.47 ? CGA HEM 200 A 1 HETATM 13 O O1A HEM . . . E 3 20.255 -20.092 0.595 1 42.58 ? O1A HEM 200 A 1 HETATM 14 O O2A HEM . . . E 3 18.849 -21.557 -0.223 1 44.45 ? O2A HEM 200 A 1 HETATM 15 C C1B HEM . . . E 3 11.719 -16.744 -1.612 1 21.37 ? C1B HEM 200 A 1 HETATM 16 C C2B HEM . . . E 3 10.251 -16.785 -1.349 1 20.73 ? C2B HEM 200 A 1 HETATM 17 C C3B HEM . . . E 3 9.784 -15.565 -1.631 1 20.35 ? C3B HEM 200 A 1 HETATM 18 C C4B HEM . . . E 3 10.971 -14.785 -2.073 1 20.36 ? C4B HEM 200 A 1 HETATM 19 C CMB HEM . . . E 3 9.439 -17.974 -0.829 1 19.39 ? CMB HEM 200 A 1 HETATM 20 C CAB HEM . . . E 3 8.34 -15.049 -1.485 1 22.73 ? CAB HEM 200 A 1 HETATM 21 C CBB HEM . . . E 3 7.189 -15.681 -2.318 1 23.25 ? CBB HEM 200 A 1 HETATM 22 C C1C HEM . . . E 3 12.012 -12.654 -2.962 1 19.91 ? C1C HEM 200 A 1 HETATM 23 C C2C HEM . . . E 3 11.874 -11.292 -3.479 1 21.44 ? C2C HEM 200 A 1 HETATM 24 C C3C HEM . . . E 3 13.152 -10.928 -3.858 1 21.54 ? C3C HEM 200 A 1 HETATM 25 C C4C HEM . . . E 3 14.006 -12.038 -3.529 1 20.16 ? C4C HEM 200 A 1 HETATM 26 C CMC HEM . . . E 3 10.529 -10.523 -3.594 1 20.98 ? CMC HEM 200 A 1 HETATM 27 C CAC HEM . . . E 3 13.718 -9.633 -4.547 1 21.18 ? CAC HEM 200 A 1 HETATM 28 C CBC HEM . . . E 3 12.897 -8.505 -5.232 1 23.26 ? CBC HEM 200 A 1 HETATM 29 C C1D HEM . . . E 3 16.32 -13.079 -3.569 1 22.95 ? C1D HEM 200 A 1 HETATM 30 C C2D HEM . . . E 3 17.726 -12.991 -3.963 1 23.73 ? C2D HEM 200 A 1 HETATM 31 C C3D HEM . . . E 3 18.214 -14.225 -3.648 1 25.37 ? C3D HEM 200 A 1 HETATM 32 C C4D HEM . . . E 3 17.091 -15.029 -3.048 1 24.53 ? C4D HEM 200 A 1 HETATM 33 C CMD HEM . . . E 3 18.424 -11.823 -4.627 1 22.62 ? CMD HEM 200 A 1 HETATM 34 C CAD HEM . . . E 3 19.611 -14.738 -3.878 1 26.56 ? CAD HEM 200 A 1 HETATM 35 C CBD HEM . . . E 3 19.82 -15.28 -5.369 1 30.89 ? CBD HEM 200 A 1 HETATM 36 C CGD HEM . . . E 3 21.057 -15.984 -5.503 1 34.69 ? CGD HEM 200 A 1 HETATM 37 O O1D HEM . . . E 3 22.185 -15.369 -5.558 1 34.6 ? O1D HEM 200 A 1 HETATM 38 O O2D HEM . . . E 3 21.081 -17.26 -5.503 1 38.21 ? O2D HEM 200 A 1 HETATM 39 N NA HEM . . . E 3 14.781 -16.711 -2.05 1 23.71 ? NA HEM 200 A 1 HETATM 40 N NB HEM . . . E 3 12.161 -15.498 -2.037 1 21.26 ? NB HEM 200 A 1 HETATM 41 N NC HEM . . . E 3 13.335 -13.089 -3.011 1 20.29 ? NC HEM 200 A 1 HETATM 42 N ND HEM . . . E 3 15.929 -14.313 -3.04 1 23.74 ? ND HEM 200 A 1 HETATM 43 FE FE HEM . . . E 3 14.054 -14.855 -2.473 1 21.46 ? FE HEM 200 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #