data_1S5Y # _model_server_result.job_id RA52Kg6nCGToQZ75ClA8GQ _model_server_result.datetime_utc '2024-10-23 22:25:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 1S5Y # _exptl.entry_id 1S5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 77.06 _cell.angle_beta 69.79 _cell.angle_gamma 84.17 _cell.entry_id 1S5Y _cell.length_a 55.993 _cell.length_b 62.98 _cell.length_c 63.502 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 E FE HEM . A HEM 200 1_555 A NE2 HIS 89 A HIS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc2 E FE HEM . A HEM 200 1_555 I O HOH . A HOH 850 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 F FE HEM . B HEM 400 1_555 B NE2 HIS 63 B HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 F FE HEM . B HEM 400 1_555 B NE2 HIS 92 B HIS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc5 G FE HEM . C HEM 600 1_555 C NE2 HIS 89 C HIS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc6 G FE HEM . C HEM 600 1_555 K O HOH . C HOH 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc7 H FE HEM . D HEM 800 1_555 D NE2 HIS 63 D HIS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc8 H FE HEM . D HEM 800 1_555 D NE2 HIS 92 D HIS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N SER 2 A SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale2 C C ACE 1 C ACE 0 1_555 C N SER 2 C SER 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 1S5Y _atom_sites.fract_transf_matrix[1][1] 0.01786 _atom_sites.fract_transf_matrix[1][2] -0.00182 _atom_sites.fract_transf_matrix[1][3] -0.00634 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01596 _atom_sites.fract_transf_matrix[2][3] -0.0033 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01713 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 200 200 HEM HEM . F 3 HEM B 1 400 400 HEM HEM . G 3 HEM C 1 600 600 HEM HEM . H 3 HEM D 1 800 800 HEM HEM . I 4 HOH A 1 850 850 HOH HOH . I 4 HOH A 2 1002 1002 HOH HOH . I 4 HOH A 3 1007 1007 HOH HOH . I 4 HOH A 4 1009 1009 HOH HOH . I 4 HOH A 5 1010 1010 HOH HOH . I 4 HOH A 6 1012 1012 HOH HOH . I 4 HOH A 7 1014 1014 HOH HOH . I 4 HOH A 8 1017 1017 HOH HOH . I 4 HOH A 9 1018 1018 HOH HOH . I 4 HOH A 10 1019 1019 HOH HOH . I 4 HOH A 11 1025 1025 HOH HOH . I 4 HOH A 12 1026 1026 HOH HOH . I 4 HOH A 13 1032 1032 HOH HOH . I 4 HOH A 14 1033 1033 HOH HOH . I 4 HOH A 15 1042 1042 HOH HOH . I 4 HOH A 16 1043 1043 HOH HOH . I 4 HOH A 17 1044 1044 HOH HOH . I 4 HOH A 18 1045 1045 HOH HOH . I 4 HOH A 19 1047 1047 HOH HOH . I 4 HOH A 20 1054 1054 HOH HOH . I 4 HOH A 21 1057 1057 HOH HOH . I 4 HOH A 22 1059 1059 HOH HOH . I 4 HOH A 23 1064 1064 HOH HOH . I 4 HOH A 24 1066 1066 HOH HOH . I 4 HOH A 25 1073 1073 HOH HOH . I 4 HOH A 26 1075 1075 HOH HOH . I 4 HOH A 27 1076 1076 HOH HOH . I 4 HOH A 28 1081 1081 HOH HOH . I 4 HOH A 29 1082 1082 HOH HOH . J 4 HOH B 1 1004 1004 HOH HOH . J 4 HOH B 2 1008 1008 HOH HOH . J 4 HOH B 3 1029 1029 HOH HOH . J 4 HOH B 4 1030 1030 HOH HOH . J 4 HOH B 5 1031 1031 HOH HOH . J 4 HOH B 6 1034 1034 HOH HOH . J 4 HOH B 7 1039 1039 HOH HOH . J 4 HOH B 8 1041 1041 HOH HOH . J 4 HOH B 9 1051 1051 HOH HOH . J 4 HOH B 10 1056 1056 HOH HOH . J 4 HOH B 11 1061 1061 HOH HOH . J 4 HOH B 12 1065 1065 HOH HOH . J 4 HOH B 13 1068 1068 HOH HOH . J 4 HOH B 14 1069 1069 HOH HOH . J 4 HOH B 15 1070 1070 HOH HOH . J 4 HOH B 16 1074 1074 HOH HOH . J 4 HOH B 17 1080 1080 HOH HOH . K 4 HOH C 1 900 900 HOH HOH . K 4 HOH C 2 1003 1003 HOH HOH . K 4 HOH C 3 1011 1011 HOH HOH . K 4 HOH C 4 1015 1015 HOH HOH . K 4 HOH C 5 1022 1022 HOH HOH . K 4 HOH C 6 1027 1027 HOH HOH . K 4 HOH C 7 1035 1035 HOH HOH . K 4 HOH C 8 1036 1036 HOH HOH . K 4 HOH C 9 1038 1038 HOH HOH . K 4 HOH C 10 1048 1048 HOH HOH . K 4 HOH C 11 1050 1050 HOH HOH . K 4 HOH C 12 1052 1052 HOH HOH . K 4 HOH C 13 1053 1053 HOH HOH . K 4 HOH C 14 1055 1055 HOH HOH . K 4 HOH C 15 1062 1062 HOH HOH . K 4 HOH C 16 1072 1072 HOH HOH . K 4 HOH C 17 1077 1077 HOH HOH . L 4 HOH D 1 1006 1006 HOH HOH . L 4 HOH D 2 1013 1013 HOH HOH . L 4 HOH D 3 1016 1016 HOH HOH . L 4 HOH D 4 1020 1020 HOH HOH . L 4 HOH D 5 1021 1021 HOH HOH . L 4 HOH D 6 1023 1023 HOH HOH . L 4 HOH D 7 1024 1024 HOH HOH . L 4 HOH D 8 1028 1028 HOH HOH . L 4 HOH D 9 1037 1037 HOH HOH . L 4 HOH D 10 1040 1040 HOH HOH . L 4 HOH D 11 1046 1046 HOH HOH . L 4 HOH D 12 1049 1049 HOH HOH . L 4 HOH D 13 1058 1058 HOH HOH . L 4 HOH D 14 1060 1060 HOH HOH . L 4 HOH D 15 1063 1063 HOH HOH . L 4 HOH D 16 1067 1067 HOH HOH . L 4 HOH D 17 1071 1071 HOH HOH . L 4 HOH D 18 1078 1078 HOH HOH . L 4 HOH D 19 1079 1079 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . G 3 -17.17 2.279 16.384 1 18.48 ? CHA HEM 600 C 1 HETATM 2 C CHB HEM . . . G 3 -12.737 1.275 17.898 1 15.65 ? CHB HEM 600 C 1 HETATM 3 C CHC HEM . . . G 3 -10.974 2.257 13.558 1 13.63 ? CHC HEM 600 C 1 HETATM 4 C CHD HEM . . . G 3 -15.354 3.459 12.115 1 18.1 ? CHD HEM 600 C 1 HETATM 5 C C1A HEM . . . G 3 -16.158 1.867 17.227 1 20.62 ? C1A HEM 600 C 1 HETATM 6 C C2A HEM . . . G 3 -16.246 1.52 18.645 1 24.41 ? C2A HEM 600 C 1 HETATM 7 C C3A HEM . . . G 3 -14.964 1.225 19.079 1 21.96 ? C3A HEM 600 C 1 HETATM 8 C C4A HEM . . . G 3 -14.1 1.42 17.906 1 18.38 ? C4A HEM 600 C 1 HETATM 9 C CMA HEM . . . G 3 -14.47 0.824 20.464 1 21.47 ? CMA HEM 600 C 1 HETATM 10 C CAA HEM . . . G 3 -17.421 1.509 19.614 1 30.25 ? CAA HEM 600 C 1 HETATM 11 C CBA HEM . . . G 3 -18.946 1.683 19.375 1 37.84 ? CBA HEM 600 C 1 HETATM 12 C CGA HEM . . . G 3 -19.549 0.931 20.416 1 42.77 ? CGA HEM 600 C 1 HETATM 13 O O1A HEM . . . G 3 -19.945 -0.299 20.063 1 42.64 ? O1A HEM 600 C 1 HETATM 14 O O2A HEM . . . G 3 -19.578 1.398 21.627 1 46.05 ? O2A HEM 600 C 1 HETATM 15 C C1B HEM . . . G 3 -11.844 1.441 16.874 1 14.8 ? C1B HEM 600 C 1 HETATM 16 C C2B HEM . . . G 3 -10.399 1.235 17.003 1 15.98 ? C2B HEM 600 C 1 HETATM 17 C C3B HEM . . . G 3 -9.9 1.456 15.758 1 17.15 ? C3B HEM 600 C 1 HETATM 18 C C4B HEM . . . G 3 -11.057 1.864 14.912 1 16.03 ? C4B HEM 600 C 1 HETATM 19 C CMB HEM . . . G 3 -9.636 0.812 18.257 1 15.73 ? CMB HEM 600 C 1 HETATM 20 C CAB HEM . . . G 3 -8.458 1.304 15.261 1 18.39 ? CAB HEM 600 C 1 HETATM 21 C CBB HEM . . . G 3 -7.378 2.241 15.801 1 20.69 ? CBB HEM 600 C 1 HETATM 22 C C1C HEM . . . G 3 -11.972 2.696 12.718 1 13.91 ? C1C HEM 600 C 1 HETATM 23 C C2C HEM . . . G 3 -11.826 3.202 11.327 1 12.4 ? C2C HEM 600 C 1 HETATM 24 C C3C HEM . . . G 3 -13.069 3.555 10.957 1 13.87 ? C3C HEM 600 C 1 HETATM 25 C C4C HEM . . . G 3 -13.974 3.248 12.074 1 16.23 ? C4C HEM 600 C 1 HETATM 26 C CMC HEM . . . G 3 -10.534 3.283 10.519 1 9.07 ? CMC HEM 600 C 1 HETATM 27 C CAC HEM . . . G 3 -13.56 4.141 9.628 1 13.22 ? CAC HEM 600 C 1 HETATM 28 C CBC HEM . . . G 3 -13.023 5.494 9.086 1 15.82 ? CBC HEM 600 C 1 HETATM 29 C C1D HEM . . . G 3 -16.285 3.238 13.127 1 19.63 ? C1D HEM 600 C 1 HETATM 30 C C2D HEM . . . G 3 -17.693 3.532 13.022 1 20.35 ? C2D HEM 600 C 1 HETATM 31 C C3D HEM . . . G 3 -18.218 3.199 14.227 1 22.84 ? C3D HEM 600 C 1 HETATM 32 C C4D HEM . . . G 3 -17.088 2.7 15.055 1 20.59 ? C4D HEM 600 C 1 HETATM 33 C CMD HEM . . . G 3 -18.382 4.131 11.823 1 23.37 ? CMD HEM 600 C 1 HETATM 34 C CAD HEM . . . G 3 -19.657 3.338 14.715 1 24.6 ? CAD HEM 600 C 1 HETATM 35 C CBD HEM . . . G 3 -19.834 4.773 15.441 1 32.31 ? CBD HEM 600 C 1 HETATM 36 C CGD HEM . . . G 3 -21.162 5.168 15.837 1 35.71 ? CGD HEM 600 C 1 HETATM 37 O O1D HEM . . . G 3 -22.142 5.236 14.995 1 35.64 ? O1D HEM 600 C 1 HETATM 38 O O2D HEM . . . G 3 -21.4 5.416 17.066 1 38.48 ? O2D HEM 600 C 1 HETATM 39 N NA HEM . . . G 3 -14.83 1.791 16.801 1 19.16 ? NA HEM 600 C 1 HETATM 40 N NB HEM . . . G 3 -12.26 1.818 15.629 1 14.63 ? NB HEM 600 C 1 HETATM 41 N NC HEM . . . G 3 -13.33 2.734 13.158 1 16.56 ? NC HEM 600 C 1 HETATM 42 N ND HEM . . . G 3 -15.927 2.731 14.353 1 18.4 ? ND HEM 600 C 1 HETATM 43 FE FE HEM . . . G 3 -14.119 2.199 14.961 1 18.54 ? FE HEM 600 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #