data_1S6A # _model_server_result.job_id sW7x6ex5yxfhCg8-HEG7Hw _model_server_result.datetime_utc '2024-11-30 01:55:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s6a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":125}' # _entry.id 1S6A # _exptl.entry_id 1S6A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S6A _cell.length_a 83.35 _cell.length_b 83.35 _cell.length_c 65.18 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S6A _symmetry.cell_setting ? _symmetry.Int_Tables_number 80 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 117 A HIS 117 1_555 D CAB HEM . A HEM 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.737 ? metalc ? metalc1 A NE2 HIS 70 A HIS 70 1_555 D FE HEM . A HEM 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc2 D FE HEM . A HEM 125 1_555 C N3 AZI . A AZI 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.644 ? metalc ? metalc3 D FE HEM . A HEM 125 1_555 C N2 AZI . A AZI 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.738 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 135 n n CHA C4D HEM doub 136 n n CHA HHA HEM sing 137 n n CHB C4A HEM sing 138 n n CHB C1B HEM doub 139 n n CHB HHB HEM sing 140 n n CHC C4B HEM sing 141 n n CHC C1C HEM doub 142 n n CHC HHC HEM sing 143 n n CHD C4C HEM doub 144 n n CHD C1D HEM sing 145 n n CHD HHD HEM sing 146 n n C1A C2A HEM doub 147 n y C1A NA HEM sing 148 n y C2A C3A HEM sing 149 n y C2A CAA HEM sing 150 n n C3A C4A HEM doub 151 n y C3A CMA HEM sing 152 n n C4A NA HEM sing 153 n y CMA HMA HEM sing 154 n n CMA HMAA HEM sing 155 n n CMA HMAB HEM sing 156 n n CAA CBA HEM sing 157 n n CAA HAA HEM sing 158 n n CAA HAAA HEM sing 159 n n CBA CGA HEM sing 160 n n CBA HBA HEM sing 161 n n CBA HBAA HEM sing 162 n n CGA O1A HEM doub 163 n n CGA O2A HEM sing 164 n n C1B C2B HEM sing 165 n n C1B NB HEM sing 166 n n C2B C3B HEM doub 167 n n C2B CMB HEM sing 168 n n C3B C4B HEM sing 169 n n C3B CAB HEM sing 170 n n C4B NB HEM doub 171 n n CMB HMB HEM sing 172 n n CMB HMBA HEM sing 173 n n CMB HMBB HEM sing 174 n n CAB CBB HEM doub 175 n n CAB HAB HEM sing 176 n n CBB HBB HEM sing 177 n n CBB HBBA HEM sing 178 n n C1C C2C HEM sing 179 n y C1C NC HEM sing 180 n y C2C C3C HEM doub 181 n y C2C CMC HEM sing 182 n n C3C C4C HEM sing 183 n y C3C CAC HEM sing 184 n n C4C NC HEM sing 185 n y CMC HMC HEM sing 186 n n CMC HMCA HEM sing 187 n n CMC HMCB HEM sing 188 n n CAC CBC HEM doub 189 n n CAC HAC HEM sing 190 n n CBC HBC HEM sing 191 n n CBC HBCA HEM sing 192 n n C1D C2D HEM sing 193 n n C1D ND HEM doub 194 n n C2D C3D HEM doub 195 n n C2D CMD HEM sing 196 n n C3D C4D HEM sing 197 n n C3D CAD HEM sing 198 n n C4D ND HEM sing 199 n n CMD HMD HEM sing 200 n n CMD HMDA HEM sing 201 n n CMD HMDB HEM sing 202 n n CAD CBD HEM sing 203 n n CAD HAD HEM sing 204 n n CAD HADA HEM sing 205 n n CBD CGD HEM sing 206 n n CBD HBD HEM sing 207 n n CBD HBDA HEM sing 208 n n CGD O1D HEM doub 209 n n CGD O2D HEM sing 210 n n O2A H2A HEM sing 211 n n O2D H2D HEM sing 212 n n FE NA HEM sing 213 n n FE NB HEM sing 214 n n FE NC HEM sing 215 n n FE ND HEM sing 216 n n # _atom_sites.entry_id 1S6A _atom_sites.fract_transf_matrix[1][1] 0.011998 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FLC A 1 227 127 FLC FLC . C 3 AZI A 1 126 126 AZI AZI . D 4 HEM A 1 125 125 HEM HEM . E 5 HOH A 1 228 1 HOH HOH . E 5 HOH A 2 229 2 HOH HOH . E 5 HOH A 3 230 3 HOH HOH . E 5 HOH A 4 231 4 HOH HOH . E 5 HOH A 5 232 5 HOH HOH . E 5 HOH A 6 233 6 HOH HOH . E 5 HOH A 7 234 7 HOH HOH . E 5 HOH A 8 235 8 HOH HOH . E 5 HOH A 9 236 9 HOH HOH . E 5 HOH A 10 237 10 HOH HOH . E 5 HOH A 11 238 11 HOH HOH . E 5 HOH A 12 239 12 HOH HOH . E 5 HOH A 13 240 13 HOH HOH . E 5 HOH A 14 241 14 HOH HOH . E 5 HOH A 15 242 15 HOH HOH . E 5 HOH A 16 243 16 HOH HOH . E 5 HOH A 17 244 17 HOH HOH . E 5 HOH A 18 245 18 HOH HOH . E 5 HOH A 19 246 19 HOH HOH . E 5 HOH A 20 247 20 HOH HOH . E 5 HOH A 21 248 21 HOH HOH . E 5 HOH A 22 249 22 HOH HOH . E 5 HOH A 23 250 23 HOH HOH . E 5 HOH A 24 251 24 HOH HOH . E 5 HOH A 25 252 25 HOH HOH . E 5 HOH A 26 253 26 HOH HOH . E 5 HOH A 27 254 27 HOH HOH . E 5 HOH A 28 255 28 HOH HOH . E 5 HOH A 29 256 29 HOH HOH . E 5 HOH A 30 257 30 HOH HOH . E 5 HOH A 31 258 31 HOH HOH . E 5 HOH A 32 259 32 HOH HOH . E 5 HOH A 33 260 33 HOH HOH . E 5 HOH A 34 261 34 HOH HOH . E 5 HOH A 35 262 35 HOH HOH . E 5 HOH A 36 263 36 HOH HOH . E 5 HOH A 37 264 37 HOH HOH . E 5 HOH A 38 265 38 HOH HOH . E 5 HOH A 39 266 39 HOH HOH . E 5 HOH A 40 267 40 HOH HOH . E 5 HOH A 41 268 41 HOH HOH . E 5 HOH A 42 269 42 HOH HOH . E 5 HOH A 43 270 43 HOH HOH . E 5 HOH A 44 271 44 HOH HOH . E 5 HOH A 45 272 45 HOH HOH . E 5 HOH A 46 273 46 HOH HOH . E 5 HOH A 47 274 47 HOH HOH . E 5 HOH A 48 275 48 HOH HOH . E 5 HOH A 49 276 49 HOH HOH . E 5 HOH A 50 277 50 HOH HOH . E 5 HOH A 51 278 51 HOH HOH . E 5 HOH A 52 279 52 HOH HOH . E 5 HOH A 53 280 53 HOH HOH . E 5 HOH A 54 281 54 HOH HOH . E 5 HOH A 55 282 55 HOH HOH . E 5 HOH A 56 283 56 HOH HOH . E 5 HOH A 57 284 57 HOH HOH . E 5 HOH A 58 285 58 HOH HOH . E 5 HOH A 59 286 59 HOH HOH . E 5 HOH A 60 287 60 HOH HOH . E 5 HOH A 61 288 61 HOH HOH . E 5 HOH A 62 289 62 HOH HOH . E 5 HOH A 63 290 63 HOH HOH . E 5 HOH A 64 291 64 HOH HOH . E 5 HOH A 65 292 65 HOH HOH . E 5 HOH A 66 293 66 HOH HOH . E 5 HOH A 67 294 67 HOH HOH . E 5 HOH A 68 295 68 HOH HOH . E 5 HOH A 69 296 69 HOH HOH . E 5 HOH A 70 297 70 HOH HOH . E 5 HOH A 71 298 71 HOH HOH . E 5 HOH A 72 299 72 HOH HOH . E 5 HOH A 73 300 73 HOH HOH . E 5 HOH A 74 301 74 HOH HOH . E 5 HOH A 75 302 75 HOH HOH . E 5 HOH A 76 303 76 HOH HOH . E 5 HOH A 77 304 77 HOH HOH . E 5 HOH A 78 305 78 HOH HOH . E 5 HOH A 79 306 79 HOH HOH . E 5 HOH A 80 307 80 HOH HOH . E 5 HOH A 81 308 81 HOH HOH . E 5 HOH A 82 309 82 HOH HOH . E 5 HOH A 83 310 83 HOH HOH . E 5 HOH A 84 311 84 HOH HOH . E 5 HOH A 85 312 85 HOH HOH . E 5 HOH A 86 313 86 HOH HOH . E 5 HOH A 87 314 87 HOH HOH . E 5 HOH A 88 315 88 HOH HOH . E 5 HOH A 89 316 89 HOH HOH . E 5 HOH A 90 317 90 HOH HOH . E 5 HOH A 91 318 91 HOH HOH . E 5 HOH A 92 319 92 HOH HOH . E 5 HOH A 93 320 93 HOH HOH . E 5 HOH A 94 321 94 HOH HOH . E 5 HOH A 95 322 95 HOH HOH . E 5 HOH A 96 323 96 HOH HOH . E 5 HOH A 97 324 97 HOH HOH . E 5 HOH A 98 325 98 HOH HOH . E 5 HOH A 99 326 99 HOH HOH . E 5 HOH A 100 327 100 HOH HOH . E 5 HOH A 101 328 101 HOH HOH . E 5 HOH A 102 329 102 HOH HOH . E 5 HOH A 103 330 103 HOH HOH . E 5 HOH A 104 331 104 HOH HOH . E 5 HOH A 105 332 105 HOH HOH . E 5 HOH A 106 333 106 HOH HOH . E 5 HOH A 107 334 107 HOH HOH . E 5 HOH A 108 335 108 HOH HOH . E 5 HOH A 109 336 109 HOH HOH . E 5 HOH A 110 337 110 HOH HOH . E 5 HOH A 111 338 111 HOH HOH . E 5 HOH A 112 339 112 HOH HOH . E 5 HOH A 113 340 113 HOH HOH . E 5 HOH A 114 341 114 HOH HOH . E 5 HOH A 115 342 115 HOH HOH . E 5 HOH A 116 343 116 HOH HOH . E 5 HOH A 117 344 117 HOH HOH . E 5 HOH A 118 345 118 HOH HOH . E 5 HOH A 119 346 119 HOH HOH . E 5 HOH A 120 347 120 HOH HOH . E 5 HOH A 121 348 121 HOH HOH . E 5 HOH A 122 349 122 HOH HOH . E 5 HOH A 123 350 123 HOH HOH . E 5 HOH A 124 351 124 HOH HOH . E 5 HOH A 125 352 125 HOH HOH . E 5 HOH A 126 353 126 HOH HOH . E 5 HOH A 127 354 127 HOH HOH . E 5 HOH A 128 355 128 HOH HOH . E 5 HOH A 129 356 129 HOH HOH . E 5 HOH A 130 357 130 HOH HOH . E 5 HOH A 131 358 131 HOH HOH . E 5 HOH A 132 359 132 HOH HOH . E 5 HOH A 133 360 133 HOH HOH . E 5 HOH A 134 361 134 HOH HOH . E 5 HOH A 135 362 135 HOH HOH . E 5 HOH A 136 363 136 HOH HOH . E 5 HOH A 137 364 137 HOH HOH . E 5 HOH A 138 365 138 HOH HOH . E 5 HOH A 139 366 139 HOH HOH . E 5 HOH A 140 367 140 HOH HOH . E 5 HOH A 141 368 141 HOH HOH . E 5 HOH A 142 369 142 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 61.036 46.443 -2.465 1 16.32 ? CHA HEM 125 A 1 HETATM 2 C CHB HEM . . . D 4 65.559 44.717 -2.756 1 16.53 ? CHB HEM 125 A 1 HETATM 3 C CHC HEM . . . D 4 66.713 47.549 1.007 1 16.34 ? CHC HEM 125 A 1 HETATM 4 C CHD HEM . . . D 4 62.018 47.114 2.256 1 16.28 ? CHD HEM 125 A 1 HETATM 5 C C1A HEM . . . D 4 62.187 45.829 -2.912 1 17.49 ? C1A HEM 125 A 1 HETATM 6 C C2A HEM . . . D 4 62.3 45.077 -4.134 1 16.11 ? C2A HEM 125 A 1 HETATM 7 C C3A HEM . . . D 4 63.521 44.57 -4.222 1 15.4 ? C3A HEM 125 A 1 HETATM 8 C C4A HEM . . . D 4 64.256 45.006 -3.057 1 17.49 ? C4A HEM 125 A 1 HETATM 9 C CMA HEM . . . D 4 64.092 43.679 -5.351 1 15.61 ? CMA HEM 125 A 1 HETATM 10 C CAA HEM . . . D 4 61.111 44.898 -5.106 1 17.32 ? CAA HEM 125 A 1 HETATM 11 C CBA HEM . . . D 4 61.352 45.797 -6.328 1 20.61 ? CBA HEM 125 A 1 HETATM 12 C CGA HEM . . . D 4 60.312 45.665 -7.446 1 23.36 ? CGA HEM 125 A 1 HETATM 13 O O1A HEM . . . D 4 59.162 46.077 -7.239 1 23.19 ? O1A HEM 125 A 1 HETATM 14 O O2A HEM . . . D 4 60.635 45.192 -8.574 1 24.22 ? O2A HEM 125 A 1 HETATM 15 C C1B HEM . . . D 4 66.3 45.387 -1.799 1 16.98 ? C1B HEM 125 A 1 HETATM 16 C C2B HEM . . . D 4 67.738 45.388 -1.687 1 14.41 ? C2B HEM 125 A 1 HETATM 17 C C3B HEM . . . D 4 68.072 46.19 -0.658 1 15.72 ? C3B HEM 125 A 1 HETATM 18 C C4B HEM . . . D 4 66.845 46.715 -0.086 1 15.42 ? C4B HEM 125 A 1 HETATM 19 C CMB HEM . . . D 4 68.661 44.588 -2.613 1 11.91 ? CMB HEM 125 A 1 HETATM 20 C CAB HEM . . . D 4 69.481 46.514 -0.074 1 16.39 ? CAB HEM 125 A 1 HETATM 21 C CBB HEM . . . D 4 70.201 45.534 0.585 1 15.7 ? CBB HEM 125 A 1 HETATM 22 C C1C HEM . . . D 4 65.546 47.652 1.783 1 15.41 ? C1C HEM 125 A 1 HETATM 23 C C2C HEM . . . D 4 65.391 48.164 3.109 1 15.45 ? C2C HEM 125 A 1 HETATM 24 C C3C HEM . . . D 4 64.076 47.987 3.462 1 17.41 ? C3C HEM 125 A 1 HETATM 25 C C4C HEM . . . D 4 63.379 47.409 2.359 1 16.53 ? C4C HEM 125 A 1 HETATM 26 C CMC HEM . . . D 4 66.548 48.748 3.949 1 13.63 ? CMC HEM 125 A 1 HETATM 27 C CAC HEM . . . D 4 63.31 48.337 4.776 1 18.21 ? CAC HEM 125 A 1 HETATM 28 C CBC HEM . . . D 4 63.743 47.935 5.963 1 18.85 ? CBC HEM 125 A 1 HETATM 29 C C1D HEM . . . D 4 61.302 46.946 1.094 1 14.89 ? C1D HEM 125 A 1 HETATM 30 C C2D HEM . . . D 4 59.859 47.01 0.989 1 13.12 ? C2D HEM 125 A 1 HETATM 31 C C3D HEM . . . D 4 59.548 46.811 -0.502 1 17.69 ? C3D HEM 125 A 1 HETATM 32 C C4D HEM . . . D 4 60.819 46.65 -1.139 1 16.03 ? C4D HEM 125 A 1 HETATM 33 C CMD HEM . . . D 4 58.957 47.208 2.237 1 14.01 ? CMD HEM 125 A 1 HETATM 34 C CAD HEM . . . D 4 58.188 46.765 -1.229 1 22.03 ? CAD HEM 125 A 1 HETATM 35 C CBD HEM . . . D 4 57.846 48.241 -1.388 1 24.62 ? CBD HEM 125 A 1 HETATM 36 C CGD HEM . . . D 4 56.399 48.301 -1.754 1 30.17 ? CGD HEM 125 A 1 HETATM 37 O O1D HEM . . . D 4 56.081 48.141 -2.932 1 31.41 ? O1D HEM 125 A 1 HETATM 38 O O2D HEM . . . D 4 55.533 48.488 -0.89 1 34.01 ? O2D HEM 125 A 1 HETATM 39 N NA HEM . . . D 4 63.397 45.752 -2.236 1 16.84 ? NA HEM 125 A 1 HETATM 40 N NB HEM . . . D 4 65.808 46.216 -0.827 1 16.52 ? NB HEM 125 A 1 HETATM 41 N NC HEM . . . D 4 64.307 47.227 1.386 1 15.37 ? NC HEM 125 A 1 HETATM 42 N ND HEM . . . D 4 61.812 46.772 -0.188 1 17.81 ? ND HEM 125 A 1 HETATM 43 FE FE HEM . . . D 4 63.813 46.523 -0.466 1 18.43 ? FE HEM 125 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 407 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #