data_1S9B # _model_server_result.job_id niQ8QjqLrXqAcrs-GJzw0g _model_server_result.datetime_utc '2024-10-18 15:24:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 1S9B # _exptl.entry_id 1S9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S9B _cell.length_a 70.867 _cell.length_b 70.867 _cell.length_c 70.867 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 197 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N7 DG 1 A DG 1 1_555 C NI NI . A NI 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 A N7 DG 7 A DG 7 1_555 D NI NI . A NI 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc3 C NI NI . A NI 101 1_555 G O HOH . A HOH 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc4 C NI NI . A NI 101 1_555 G O HOH . A HOH 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc5 C NI NI . A NI 101 1_555 G O HOH . A HOH 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc6 C NI NI . A NI 101 1_555 G O HOH . A HOH 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc7 C NI NI . A NI 101 1_555 G O HOH . A HOH 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc8 D NI NI . A NI 103 1_555 G O HOH . A HOH 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc9 D NI NI . A NI 103 1_555 G O HOH . A HOH 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc10 D NI NI . A NI 103 1_555 G O HOH . A HOH 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc11 D NI NI . A NI 103 1_555 G O HOH . A HOH 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc12 D NI NI . A NI 103 1_555 G O HOH . A HOH 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc13 B N7 DG 1 B DG 1 1_555 E NI NI . B NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc14 B O6 DG 1 B DG 1 1_555 E NI NI . B NI 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? metalc ? metalc15 B N7 DG 7 B DG 7 1_555 F NI NI . B NI 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc16 H O HOH . B HOH 101 1_555 F NI NI . B NI 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc17 E NI NI . B NI 102 1_555 H O HOH . B HOH 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc18 E NI NI . B NI 102 1_555 H O HOH . B HOH 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc19 E NI NI . B NI 102 1_555 H O HOH . B HOH 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc20 E NI NI . B NI 102 1_555 H O HOH . B HOH 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc21 E NI NI . B NI 102 1_555 H O HOH . B HOH 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc22 H O HOH . B HOH 103 1_555 F NI NI . B NI 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc23 F NI NI . B NI 104 1_555 H O HOH . B HOH 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc24 F NI NI . B NI 104 1_555 H O HOH . B HOH 124 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc25 F NI NI . B NI 104 1_555 H O HOH . B HOH 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 B N3 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 B O2 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 B N4 DC 6 B DC 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 A DA 2 1_555 B N3 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 A DA 2 1_555 B O4 DT 5 B DT 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N1 DA 3 A DA 3 1_555 B N3 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N6 DA 3 A DA 3 1_555 B O4 DT 4 B DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DT 4 A DT 4 1_555 B N1 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 DT 4 A DT 4 1_555 B N6 DA 3 B DA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 5 A DT 5 1_555 B N1 DA 2 B DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 5 A DT 5 1_555 B N6 DA 2 B DA 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DC 6 A DC 6 1_555 B N1 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N4 DC 6 A DC 6 1_555 B O6 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O2 DC 6 A DC 6 1_555 B N2 DG 1 B DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1S9B _atom_sites.fract_transf_matrix[1][1] 0.014111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014111 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 101 1 NI NI . D 2 NI A 1 103 3 NI NI . E 2 NI B 1 102 2 NI NI . F 2 NI B 1 104 4 NI NI . G 3 HOH A 1 102 2 HOH HOH . G 3 HOH A 2 109 9 HOH HOH . G 3 HOH A 3 110 10 HOH HOH . G 3 HOH A 4 111 11 HOH HOH . G 3 HOH A 5 112 12 HOH HOH . G 3 HOH A 6 113 13 HOH HOH . G 3 HOH A 7 119 19 HOH HOH . G 3 HOH A 8 120 20 HOH HOH . G 3 HOH A 9 121 21 HOH HOH . G 3 HOH A 10 122 22 HOH HOH . H 3 HOH B 1 101 1 HOH HOH . H 3 HOH B 2 103 3 HOH HOH . H 3 HOH B 3 114 14 HOH HOH . H 3 HOH B 4 115 15 HOH HOH . H 3 HOH B 5 116 16 HOH HOH . H 3 HOH B 6 117 17 HOH HOH . H 3 HOH B 7 118 4 HOH HOH . H 3 HOH B 8 123 23 HOH HOH . H 3 HOH B 9 124 24 HOH HOH . H 3 HOH B 10 125 25 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 15.151 _atom_site.Cartn_y -12.047 _atom_site.Cartn_z 19.701 _atom_site.occupancy 0.7 _atom_site.B_iso_or_equiv 48.9 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #