data_1S9D # _model_server_result.job_id AuzgfDAf4TWvoTNiOnJlig _model_server_result.datetime_utc '2024-11-16 01:20:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 1S9D # _exptl.entry_id 1S9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1S9D _cell.length_a 111.462 _cell.length_b 111.462 _cell.length_c 74.534 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C LEU 124 E LEU 173 1_555 B N CME 125 E CME 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? covale ? covale2 B C CME 125 E CME 174 1_555 B N ASN 126 E ASN 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 A OG1 THR 14 A THR 31 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc2 D O1B GDP . A GDP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc3 C MG MG . A MG 402 1_555 F O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc4 C MG MG . A MG 402 1_555 F O HOH . A HOH 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc5 C MG MG . A MG 402 1_555 F O HOH . A HOH 458 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc6 C MG MG . A MG 402 1_555 F O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1S9D _atom_sites.fract_transf_matrix[1][1] 0.008972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008972 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013417 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 402 402 MG MG . D 4 GDP A 1 401 401 GDP GDP . E 5 AFB A 1 403 403 AFB AFB . F 6 HOH A 1 404 2 HOH HOH . F 6 HOH A 2 405 3 HOH HOH . F 6 HOH A 3 406 5 HOH HOH . F 6 HOH A 4 407 6 HOH HOH . F 6 HOH A 5 408 7 HOH HOH . F 6 HOH A 6 409 9 HOH HOH . F 6 HOH A 7 410 10 HOH HOH . F 6 HOH A 8 411 12 HOH HOH . F 6 HOH A 9 412 14 HOH HOH . F 6 HOH A 10 413 15 HOH HOH . F 6 HOH A 11 414 17 HOH HOH . F 6 HOH A 12 415 19 HOH HOH . F 6 HOH A 13 416 21 HOH HOH . F 6 HOH A 14 417 23 HOH HOH . F 6 HOH A 15 418 24 HOH HOH . F 6 HOH A 16 419 25 HOH HOH . F 6 HOH A 17 420 26 HOH HOH . F 6 HOH A 18 421 27 HOH HOH . F 6 HOH A 19 422 31 HOH HOH . F 6 HOH A 20 423 32 HOH HOH . F 6 HOH A 21 424 33 HOH HOH . F 6 HOH A 22 425 35 HOH HOH . F 6 HOH A 23 426 36 HOH HOH . F 6 HOH A 24 427 37 HOH HOH . F 6 HOH A 25 428 40 HOH HOH . F 6 HOH A 26 429 45 HOH HOH . F 6 HOH A 27 430 46 HOH HOH . F 6 HOH A 28 431 47 HOH HOH . F 6 HOH A 29 432 49 HOH HOH . F 6 HOH A 30 433 51 HOH HOH . F 6 HOH A 31 434 52 HOH HOH . F 6 HOH A 32 435 63 HOH HOH . F 6 HOH A 33 436 64 HOH HOH . F 6 HOH A 34 437 66 HOH HOH . F 6 HOH A 35 438 69 HOH HOH . F 6 HOH A 36 439 71 HOH HOH . F 6 HOH A 37 440 72 HOH HOH . F 6 HOH A 38 441 73 HOH HOH . F 6 HOH A 39 442 74 HOH HOH . F 6 HOH A 40 443 79 HOH HOH . F 6 HOH A 41 444 80 HOH HOH . F 6 HOH A 42 445 81 HOH HOH . F 6 HOH A 43 446 82 HOH HOH . F 6 HOH A 44 447 83 HOH HOH . F 6 HOH A 45 448 85 HOH HOH . F 6 HOH A 46 449 87 HOH HOH . F 6 HOH A 47 450 92 HOH HOH . F 6 HOH A 48 451 93 HOH HOH . F 6 HOH A 49 452 94 HOH HOH . F 6 HOH A 50 453 95 HOH HOH . F 6 HOH A 51 454 98 HOH HOH . F 6 HOH A 52 455 102 HOH HOH . F 6 HOH A 53 456 104 HOH HOH . F 6 HOH A 54 457 105 HOH HOH . F 6 HOH A 55 458 106 HOH HOH . F 6 HOH A 56 459 108 HOH HOH . F 6 HOH A 57 460 112 HOH HOH . F 6 HOH A 58 461 114 HOH HOH . F 6 HOH A 59 462 117 HOH HOH . F 6 HOH A 60 463 118 HOH HOH . F 6 HOH A 61 464 119 HOH HOH . F 6 HOH A 62 465 121 HOH HOH . F 6 HOH A 63 466 122 HOH HOH . F 6 HOH A 64 467 124 HOH HOH . F 6 HOH A 65 468 125 HOH HOH . F 6 HOH A 66 469 126 HOH HOH . F 6 HOH A 67 470 127 HOH HOH . F 6 HOH A 68 471 128 HOH HOH . F 6 HOH A 69 472 130 HOH HOH . F 6 HOH A 70 473 132 HOH HOH . F 6 HOH A 71 474 133 HOH HOH . F 6 HOH A 72 475 134 HOH HOH . F 6 HOH A 73 476 140 HOH HOH . F 6 HOH A 74 477 141 HOH HOH . F 6 HOH A 75 478 143 HOH HOH . F 6 HOH A 76 479 144 HOH HOH . F 6 HOH A 77 480 146 HOH HOH . F 6 HOH A 78 481 147 HOH HOH . F 6 HOH A 79 482 149 HOH HOH . F 6 HOH A 80 483 152 HOH HOH . F 6 HOH A 81 484 156 HOH HOH . F 6 HOH A 82 485 157 HOH HOH . F 6 HOH A 83 486 160 HOH HOH . F 6 HOH A 84 487 163 HOH HOH . F 6 HOH A 85 488 165 HOH HOH . F 6 HOH A 86 489 166 HOH HOH . F 6 HOH A 87 490 167 HOH HOH . F 6 HOH A 88 491 168 HOH HOH . F 6 HOH A 89 492 169 HOH HOH . F 6 HOH A 90 493 170 HOH HOH . F 6 HOH A 91 494 171 HOH HOH . F 6 HOH A 92 495 173 HOH HOH . F 6 HOH A 93 496 174 HOH HOH . F 6 HOH A 94 497 175 HOH HOH . F 6 HOH A 95 498 176 HOH HOH . F 6 HOH A 96 499 177 HOH HOH . F 6 HOH A 97 500 178 HOH HOH . F 6 HOH A 98 501 182 HOH HOH . F 6 HOH A 99 502 186 HOH HOH . F 6 HOH A 100 503 190 HOH HOH . F 6 HOH A 101 504 191 HOH HOH . F 6 HOH A 102 505 192 HOH HOH . F 6 HOH A 103 506 194 HOH HOH . F 6 HOH A 104 507 195 HOH HOH . F 6 HOH A 105 508 196 HOH HOH . F 6 HOH A 106 509 199 HOH HOH . F 6 HOH A 107 510 201 HOH HOH . F 6 HOH A 108 511 203 HOH HOH . F 6 HOH A 109 512 207 HOH HOH . F 6 HOH A 110 513 208 HOH HOH . F 6 HOH A 111 514 210 HOH HOH . F 6 HOH A 112 515 212 HOH HOH . F 6 HOH A 113 516 214 HOH HOH . F 6 HOH A 114 517 217 HOH HOH . F 6 HOH A 115 518 218 HOH HOH . F 6 HOH A 116 519 219 HOH HOH . F 6 HOH A 117 520 220 HOH HOH . F 6 HOH A 118 521 226 HOH HOH . F 6 HOH A 119 522 230 HOH HOH . F 6 HOH A 120 523 231 HOH HOH . F 6 HOH A 121 524 235 HOH HOH . F 6 HOH A 122 525 237 HOH HOH . F 6 HOH A 123 526 241 HOH HOH . F 6 HOH A 124 527 242 HOH HOH . F 6 HOH A 125 528 246 HOH HOH . F 6 HOH A 126 529 251 HOH HOH . F 6 HOH A 127 530 252 HOH HOH . F 6 HOH A 128 531 253 HOH HOH . F 6 HOH A 129 532 255 HOH HOH . F 6 HOH A 130 533 256 HOH HOH . F 6 HOH A 131 534 259 HOH HOH . F 6 HOH A 132 535 261 HOH HOH . F 6 HOH A 133 536 262 HOH HOH . F 6 HOH A 134 537 265 HOH HOH . F 6 HOH A 135 538 269 HOH HOH . F 6 HOH A 136 539 271 HOH HOH . F 6 HOH A 137 540 274 HOH HOH . F 6 HOH A 138 541 276 HOH HOH . F 6 HOH A 139 542 277 HOH HOH . F 6 HOH A 140 543 278 HOH HOH . F 6 HOH A 141 544 279 HOH HOH . F 6 HOH A 142 545 280 HOH HOH . F 6 HOH A 143 546 281 HOH HOH . G 6 HOH E 1 253 1 HOH HOH . G 6 HOH E 2 254 4 HOH HOH . G 6 HOH E 3 255 8 HOH HOH . G 6 HOH E 4 256 11 HOH HOH . G 6 HOH E 5 257 13 HOH HOH . G 6 HOH E 6 258 16 HOH HOH . G 6 HOH E 7 259 18 HOH HOH . G 6 HOH E 8 260 20 HOH HOH . G 6 HOH E 9 261 22 HOH HOH . G 6 HOH E 10 262 28 HOH HOH . G 6 HOH E 11 263 29 HOH HOH . G 6 HOH E 12 264 30 HOH HOH . G 6 HOH E 13 265 34 HOH HOH . G 6 HOH E 14 266 38 HOH HOH . G 6 HOH E 15 267 39 HOH HOH . G 6 HOH E 16 268 41 HOH HOH . G 6 HOH E 17 269 42 HOH HOH . G 6 HOH E 18 270 43 HOH HOH . G 6 HOH E 19 271 44 HOH HOH . G 6 HOH E 20 272 48 HOH HOH . G 6 HOH E 21 273 50 HOH HOH . G 6 HOH E 22 274 53 HOH HOH . G 6 HOH E 23 275 54 HOH HOH . G 6 HOH E 24 276 55 HOH HOH . G 6 HOH E 25 277 56 HOH HOH . G 6 HOH E 26 278 57 HOH HOH . G 6 HOH E 27 279 58 HOH HOH . G 6 HOH E 28 280 59 HOH HOH . G 6 HOH E 29 281 60 HOH HOH . G 6 HOH E 30 282 61 HOH HOH . G 6 HOH E 31 283 62 HOH HOH . G 6 HOH E 32 284 65 HOH HOH . G 6 HOH E 33 285 67 HOH HOH . G 6 HOH E 34 286 68 HOH HOH . G 6 HOH E 35 287 70 HOH HOH . G 6 HOH E 36 288 75 HOH HOH . G 6 HOH E 37 289 76 HOH HOH . G 6 HOH E 38 290 77 HOH HOH . G 6 HOH E 39 291 78 HOH HOH . G 6 HOH E 40 292 84 HOH HOH . G 6 HOH E 41 293 86 HOH HOH . G 6 HOH E 42 294 88 HOH HOH . G 6 HOH E 43 295 89 HOH HOH . G 6 HOH E 44 296 90 HOH HOH . G 6 HOH E 45 297 91 HOH HOH . G 6 HOH E 46 298 96 HOH HOH . G 6 HOH E 47 299 97 HOH HOH . G 6 HOH E 48 300 99 HOH HOH . G 6 HOH E 49 301 100 HOH HOH . G 6 HOH E 50 302 101 HOH HOH . G 6 HOH E 51 303 103 HOH HOH . G 6 HOH E 52 304 107 HOH HOH . G 6 HOH E 53 305 109 HOH HOH . G 6 HOH E 54 306 110 HOH HOH . G 6 HOH E 55 307 111 HOH HOH . G 6 HOH E 56 308 113 HOH HOH . G 6 HOH E 57 309 115 HOH HOH . G 6 HOH E 58 310 116 HOH HOH . G 6 HOH E 59 311 120 HOH HOH . G 6 HOH E 60 312 123 HOH HOH . G 6 HOH E 61 313 129 HOH HOH . G 6 HOH E 62 314 131 HOH HOH . G 6 HOH E 63 315 135 HOH HOH . G 6 HOH E 64 316 136 HOH HOH . G 6 HOH E 65 317 137 HOH HOH . G 6 HOH E 66 318 138 HOH HOH . G 6 HOH E 67 319 139 HOH HOH . G 6 HOH E 68 320 142 HOH HOH . G 6 HOH E 69 321 145 HOH HOH . G 6 HOH E 70 322 148 HOH HOH . G 6 HOH E 71 323 150 HOH HOH . G 6 HOH E 72 324 151 HOH HOH . G 6 HOH E 73 325 153 HOH HOH . G 6 HOH E 74 326 154 HOH HOH . G 6 HOH E 75 327 155 HOH HOH . G 6 HOH E 76 328 158 HOH HOH . G 6 HOH E 77 329 159 HOH HOH . G 6 HOH E 78 330 161 HOH HOH . G 6 HOH E 79 331 162 HOH HOH . G 6 HOH E 80 332 164 HOH HOH . G 6 HOH E 81 333 172 HOH HOH . G 6 HOH E 82 334 179 HOH HOH . G 6 HOH E 83 335 180 HOH HOH . G 6 HOH E 84 336 181 HOH HOH . G 6 HOH E 85 337 183 HOH HOH . G 6 HOH E 86 338 184 HOH HOH . G 6 HOH E 87 339 185 HOH HOH . G 6 HOH E 88 340 187 HOH HOH . G 6 HOH E 89 341 188 HOH HOH . G 6 HOH E 90 342 189 HOH HOH . G 6 HOH E 91 343 193 HOH HOH . G 6 HOH E 92 344 197 HOH HOH . G 6 HOH E 93 345 198 HOH HOH . G 6 HOH E 94 346 200 HOH HOH . G 6 HOH E 95 347 202 HOH HOH . G 6 HOH E 96 348 204 HOH HOH . G 6 HOH E 97 349 205 HOH HOH . G 6 HOH E 98 350 206 HOH HOH . G 6 HOH E 99 351 209 HOH HOH . G 6 HOH E 100 352 211 HOH HOH . G 6 HOH E 101 353 213 HOH HOH . G 6 HOH E 102 354 215 HOH HOH . G 6 HOH E 103 355 216 HOH HOH . G 6 HOH E 104 356 221 HOH HOH . G 6 HOH E 105 357 222 HOH HOH . G 6 HOH E 106 358 223 HOH HOH . G 6 HOH E 107 359 224 HOH HOH . G 6 HOH E 108 360 225 HOH HOH . G 6 HOH E 109 361 227 HOH HOH . G 6 HOH E 110 362 228 HOH HOH . G 6 HOH E 111 363 229 HOH HOH . G 6 HOH E 112 364 232 HOH HOH . G 6 HOH E 113 365 233 HOH HOH . G 6 HOH E 114 366 234 HOH HOH . G 6 HOH E 115 367 236 HOH HOH . G 6 HOH E 116 368 238 HOH HOH . G 6 HOH E 117 369 239 HOH HOH . G 6 HOH E 118 370 240 HOH HOH . G 6 HOH E 119 371 243 HOH HOH . G 6 HOH E 120 372 244 HOH HOH . G 6 HOH E 121 373 245 HOH HOH . G 6 HOH E 122 374 247 HOH HOH . G 6 HOH E 123 375 248 HOH HOH . G 6 HOH E 124 376 249 HOH HOH . G 6 HOH E 125 377 250 HOH HOH . G 6 HOH E 126 378 254 HOH HOH . G 6 HOH E 127 379 257 HOH HOH . G 6 HOH E 128 380 258 HOH HOH . G 6 HOH E 129 381 260 HOH HOH . G 6 HOH E 130 382 263 HOH HOH . G 6 HOH E 131 383 264 HOH HOH . G 6 HOH E 132 384 266 HOH HOH . G 6 HOH E 133 385 267 HOH HOH . G 6 HOH E 134 386 268 HOH HOH . G 6 HOH E 135 387 270 HOH HOH . G 6 HOH E 136 388 272 HOH HOH . G 6 HOH E 137 389 273 HOH HOH . G 6 HOH E 138 390 275 HOH HOH . G 6 HOH E 139 391 282 HOH HOH . G 6 HOH E 140 392 283 HOH HOH . G 6 HOH E 141 393 284 HOH HOH . G 6 HOH E 142 394 285 HOH HOH . G 6 HOH E 143 395 286 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 37.995 _atom_site.Cartn_y 4.743 _atom_site.Cartn_z 35.154 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 24.33 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #