data_1S9I # _model_server_result.job_id SLeakEznOm2aL-IpZgAMzA _model_server_result.datetime_utc '2024-10-22 21:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s9i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":535}' # _entry.id 1S9I # _exptl.entry_id 1S9I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1S9I _cell.length_a 161.888 _cell.length_b 161.888 _cell.length_c 122.986 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S9I _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND2 ASN 145 A ASN 199 1_555 C MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc2 A OD2 ASP 158 A ASP 212 1_555 C MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc3 D O2G ATP . A ATP 535 1_555 C MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 D O3B ATP . A ATP 535 1_555 C MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc5 D O1B ATP . A ATP 535 1_555 C MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? metalc ? metalc6 D O2A ATP . A ATP 535 1_555 C MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc7 B OD1 ASN 145 B ASN 199 1_555 F MG MG . B MG 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc8 B OD2 ASP 158 B ASP 212 1_555 F MG MG . B MG 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.552 ? metalc ? metalc9 G O2A ATP . B ATP 537 1_555 F MG MG . B MG 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.909 ? metalc ? metalc10 G O1B ATP . B ATP 537 1_555 F MG MG . B MG 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc11 G O2G ATP . B ATP 537 1_555 F MG MG . B MG 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 123 n n PG O2G ATP sing 124 n n PG O3G ATP sing 125 n n PG O3B ATP sing 126 n n O2G HOG2 ATP sing 127 n n O3G HOG3 ATP sing 128 n n PB O1B ATP doub 129 n n PB O2B ATP sing 130 n n PB O3B ATP sing 131 n n PB O3A ATP sing 132 n n O2B HOB2 ATP sing 133 n n PA O1A ATP doub 134 n n PA O2A ATP sing 135 n n PA O3A ATP sing 136 n n PA O5' ATP sing 137 n n O2A HOA2 ATP sing 138 n n O5' C5' ATP sing 139 n n C5' C4' ATP sing 140 n n C5' "H5'1" ATP sing 141 n n C5' "H5'2" ATP sing 142 n n C4' O4' ATP sing 143 n n C4' C3' ATP sing 144 n n C4' H4' ATP sing 145 n n O4' C1' ATP sing 146 n n C3' O3' ATP sing 147 n n C3' C2' ATP sing 148 n n C3' H3' ATP sing 149 n n O3' HO3' ATP sing 150 n n C2' O2' ATP sing 151 n n C2' C1' ATP sing 152 n n C2' H2' ATP sing 153 n n O2' HO2' ATP sing 154 n n C1' N9 ATP sing 155 n n C1' H1' ATP sing 156 n n N9 C8 ATP sing 157 n y N9 C4 ATP sing 158 n y C8 N7 ATP doub 159 n y C8 H8 ATP sing 160 n n N7 C5 ATP sing 161 n y C5 C6 ATP sing 162 n y C5 C4 ATP doub 163 n y C6 N6 ATP sing 164 n n C6 N1 ATP doub 165 n y N6 HN61 ATP sing 166 n n N6 HN62 ATP sing 167 n n N1 C2 ATP sing 168 n y C2 N3 ATP doub 169 n y C2 H2 ATP sing 170 n n N3 C4 ATP sing 171 n y # _atom_sites.entry_id 1S9I _atom_sites.fract_transf_matrix[1][1] 0.006177 _atom_sites.fract_transf_matrix[1][2] 0.003566 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007133 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008131 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 536 536 MG MG . D 3 ATP A 1 535 535 ATP ATP . E 4 5EA A 1 1001 1001 5EA 5EA . F 2 MG B 1 538 538 MG MG . G 3 ATP B 1 537 537 ATP ATP . H 4 5EA B 1 1002 1002 5EA 5EA . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 3 35.026 100.266 45.255 1 48.91 ? PG ATP 535 A 1 HETATM 2 O O1G ATP . . . D 3 34.287 98.987 45.544 1 48.93 ? O1G ATP 535 A 1 HETATM 3 O O2G ATP . . . D 3 35.726 100.846 46.458 1 49.34 ? O2G ATP 535 A 1 HETATM 4 O O3G ATP . . . D 3 34.225 101.255 44.449 1 49.22 ? O3G ATP 535 A 1 HETATM 5 P PB ATP . . . D 3 36.986 100.842 43.343 1 48.15 ? PB ATP 535 A 1 HETATM 6 O O1B ATP . . . D 3 38.341 100.231 43.096 1 48.79 ? O1B ATP 535 A 1 HETATM 7 O O2B ATP . . . D 3 36.1 101.221 42.183 1 48.44 ? O2B ATP 535 A 1 HETATM 8 O O3B ATP . . . D 3 36.193 99.792 44.267 1 48.59 ? O3B ATP 535 A 1 HETATM 9 P PA ATP . . . D 3 38.398 102.3 45.29 1 47.75 ? PA ATP 535 A 1 HETATM 10 O O1A ATP . . . D 3 38.197 103.581 46.058 1 47.81 ? O1A ATP 535 A 1 HETATM 11 O O2A ATP . . . D 3 38.547 100.998 46.036 1 48.02 ? O2A ATP 535 A 1 HETATM 12 O O3A ATP . . . D 3 37.162 102.145 44.267 1 47.98 ? O3A ATP 535 A 1 HETATM 13 O O5' ATP . . . D 3 39.689 102.459 44.344 1 47.58 ? O5' ATP 535 A 1 HETATM 14 C C5' ATP . . . D 3 39.697 103.312 43.204 1 47.69 ? C5' ATP 535 A 1 HETATM 15 C C4' ATP . . . D 3 40.953 103.058 42.377 1 47.83 ? C4' ATP 535 A 1 HETATM 16 O O4' ATP . . . D 3 42.124 103.163 43.19 1 47.59 ? O4' ATP 535 A 1 HETATM 17 C C3' ATP . . . D 3 40.986 101.669 41.756 1 47.99 ? C3' ATP 535 A 1 HETATM 18 O O3' ATP . . . D 3 40.512 101.708 40.419 1 48.54 ? O3' ATP 535 A 1 HETATM 19 C C2' ATP . . . D 3 42.439 101.244 41.811 1 47.83 ? C2' ATP 535 A 1 HETATM 20 O O2' ATP . . . D 3 43.025 101.353 40.526 1 48.01 ? O2' ATP 535 A 1 HETATM 21 C C1' ATP . . . D 3 43.119 102.24 42.738 1 47.56 ? C1' ATP 535 A 1 HETATM 22 N N9 ATP . . . D 3 43.76 101.54 43.883 1 47.03 ? N9 ATP 535 A 1 HETATM 23 C C8 ATP . . . D 3 43.142 101.056 44.979 1 46.77 ? C8 ATP 535 A 1 HETATM 24 N N7 ATP . . . D 3 44.026 100.476 45.828 1 46.38 ? N7 ATP 535 A 1 HETATM 25 C C5 ATP . . . D 3 45.237 100.583 45.274 1 46.55 ? C5 ATP 535 A 1 HETATM 26 C C6 ATP . . . D 3 46.62 100.181 45.635 1 46.53 ? C6 ATP 535 A 1 HETATM 27 N N6 ATP . . . D 3 46.872 99.531 46.795 1 46.58 ? N6 ATP 535 A 1 HETATM 28 N N1 ATP . . . D 3 47.607 100.478 44.778 1 46.4 ? N1 ATP 535 A 1 HETATM 29 C C2 ATP . . . D 3 47.369 101.124 43.618 1 46.46 ? C2 ATP 535 A 1 HETATM 30 N N3 ATP . . . D 3 46.142 101.517 43.226 1 46.43 ? N3 ATP 535 A 1 HETATM 31 C C4 ATP . . . D 3 45.064 101.284 43.99 1 46.66 ? C4 ATP 535 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 31 #