data_1S9J
#
_model_server_result.job_id            uGHU_n33sj594a2Oqv6GuA 
_model_server_result.datetime_utc      '2024-11-07 14:39:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1s9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1001}' 
#
_entry.id    1S9J 
#
_exptl.entry_id    1S9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              561.089 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-BROMO-N-(2,3-DIHYDROXYPROPOXY)-3,4-DIFLUORO-2-[(2-FLUORO-4-IODOPHENYL)AMINO]BENZAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1S9J 
_cell.length_a            81.591 
_cell.length_b            81.591 
_cell.length_c            129.213 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1S9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 40.7955 70.659879 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc3 C O1B ATP . A ATP 535 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc4 C O2A ATP . A ATP 535 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc5 B MG MG . A MG 536 1_555 E O HOH . A HOH 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc6 B MG MG . A MG 536 1_555 E O HOH . A HOH 1098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
#
_chem_comp.formula           'C16 H13 Br F3 I N2 O4' 
_chem_comp.formula_weight    561.089 
_chem_comp.id                BBM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-BROMO-N-(2,3-DIHYDROXYPROPOXY)-3,4-DIFLUORO-2-[(2-FLUORO-4-IODOPHENYL)AMINO]BENZAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C7 BBM doub 119 n n 
C7 N2 BBM sing 120 n n 
C7 C8 BBM sing 121 n n 
N2 O4 BBM sing 122 n n 
N2 HN2 BBM sing 123 n n 
O4 C15 BBM sing 124 n n 
C15 C16 BBM sing 125 n n 
C15 H151 BBM sing 126 n n 
C15 H152 BBM sing 127 n n 
C16 C17 BBM sing 128 n n 
C16 O2 BBM sing 129 n n 
C16 H16 BBM sing 130 n n 
C17 O3 BBM sing 131 n n 
C17 H171 BBM sing 132 n n 
C17 H172 BBM sing 133 n n 
O3 HO3 BBM sing 134 n n 
O2 HO2 BBM sing 135 n n 
C8 C9 BBM doub 136 n y 
C8 C13 BBM sing 137 n y 
C9 C10 BBM sing 138 n y 
C9 H9 BBM sing 139 n n 
C10 BR BBM sing 140 n n 
C10 C11 BBM doub 141 n y 
C11 F1 BBM sing 142 n n 
C11 C12 BBM sing 143 n y 
C12 F2 BBM sing 144 n n 
C12 C13 BBM doub 145 n y 
C13 N BBM sing 146 n n 
N C3 BBM sing 147 n n 
N HN BBM sing 148 n n 
C3 C26 BBM doub 149 n y 
C3 C4 BBM sing 150 n y 
C26 F3 BBM sing 151 n n 
C26 C1 BBM sing 152 n y 
C4 C5 BBM doub 153 n y 
C4 H4 BBM sing 154 n n 
C5 C6 BBM sing 155 n y 
C5 H5 BBM sing 156 n n 
C6 I BBM sing 157 n n 
C6 C1 BBM doub 158 n y 
C1 H1 BBM sing 159 n n 
#
_atom_sites.entry_id                     1S9J 
_atom_sites.fract_transf_matrix[1][1]    0.012256 
_atom_sites.fract_transf_matrix[1][2]    0.007076 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 536 536 MG MG . 
C 3 ATP A 1 535 535 ATP ATP . 
D 4 BBM A 1 1001 1001 BBM BBM . 
E 5 HOH A 1 1002 1 HOH HOH . 
E 5 HOH A 2 1003 2 HOH HOH . 
E 5 HOH A 3 1004 3 HOH HOH . 
E 5 HOH A 4 1005 4 HOH HOH . 
E 5 HOH A 5 1006 5 HOH HOH . 
E 5 HOH A 6 1007 6 HOH HOH . 
E 5 HOH A 7 1008 7 HOH HOH . 
E 5 HOH A 8 1009 8 HOH HOH . 
E 5 HOH A 9 1010 9 HOH HOH . 
E 5 HOH A 10 1011 10 HOH HOH . 
E 5 HOH A 11 1012 11 HOH HOH . 
E 5 HOH A 12 1013 12 HOH HOH . 
E 5 HOH A 13 1014 13 HOH HOH . 
E 5 HOH A 14 1015 14 HOH HOH . 
E 5 HOH A 15 1016 15 HOH HOH . 
E 5 HOH A 16 1017 16 HOH HOH . 
E 5 HOH A 17 1018 17 HOH HOH . 
E 5 HOH A 18 1019 18 HOH HOH . 
E 5 HOH A 19 1020 19 HOH HOH . 
E 5 HOH A 20 1021 20 HOH HOH . 
E 5 HOH A 21 1022 21 HOH HOH . 
E 5 HOH A 22 1023 22 HOH HOH . 
E 5 HOH A 23 1024 23 HOH HOH . 
E 5 HOH A 24 1025 24 HOH HOH . 
E 5 HOH A 25 1026 25 HOH HOH . 
E 5 HOH A 26 1027 26 HOH HOH . 
E 5 HOH A 27 1028 27 HOH HOH . 
E 5 HOH A 28 1029 28 HOH HOH . 
E 5 HOH A 29 1030 29 HOH HOH . 
E 5 HOH A 30 1031 30 HOH HOH . 
E 5 HOH A 31 1032 31 HOH HOH . 
E 5 HOH A 32 1033 32 HOH HOH . 
E 5 HOH A 33 1034 33 HOH HOH . 
E 5 HOH A 34 1035 34 HOH HOH . 
E 5 HOH A 35 1036 35 HOH HOH . 
E 5 HOH A 36 1037 36 HOH HOH . 
E 5 HOH A 37 1038 37 HOH HOH . 
E 5 HOH A 38 1039 38 HOH HOH . 
E 5 HOH A 39 1040 39 HOH HOH . 
E 5 HOH A 40 1041 40 HOH HOH . 
E 5 HOH A 41 1042 41 HOH HOH . 
E 5 HOH A 42 1043 42 HOH HOH . 
E 5 HOH A 43 1044 43 HOH HOH . 
E 5 HOH A 44 1045 44 HOH HOH . 
E 5 HOH A 45 1046 45 HOH HOH . 
E 5 HOH A 46 1047 46 HOH HOH . 
E 5 HOH A 47 1048 47 HOH HOH . 
E 5 HOH A 48 1049 48 HOH HOH . 
E 5 HOH A 49 1050 49 HOH HOH . 
E 5 HOH A 50 1051 50 HOH HOH . 
E 5 HOH A 51 1052 51 HOH HOH . 
E 5 HOH A 52 1053 52 HOH HOH . 
E 5 HOH A 53 1054 53 HOH HOH . 
E 5 HOH A 54 1055 54 HOH HOH . 
E 5 HOH A 55 1056 55 HOH HOH . 
E 5 HOH A 56 1057 56 HOH HOH . 
E 5 HOH A 57 1058 57 HOH HOH . 
E 5 HOH A 58 1059 58 HOH HOH . 
E 5 HOH A 59 1060 59 HOH HOH . 
E 5 HOH A 60 1061 60 HOH HOH . 
E 5 HOH A 61 1062 61 HOH HOH . 
E 5 HOH A 62 1063 62 HOH HOH . 
E 5 HOH A 63 1064 63 HOH HOH . 
E 5 HOH A 64 1065 64 HOH HOH . 
E 5 HOH A 65 1066 65 HOH HOH . 
E 5 HOH A 66 1067 66 HOH HOH . 
E 5 HOH A 67 1068 67 HOH HOH . 
E 5 HOH A 68 1069 68 HOH HOH . 
E 5 HOH A 69 1070 69 HOH HOH . 
E 5 HOH A 70 1071 71 HOH HOH . 
E 5 HOH A 71 1072 72 HOH HOH . 
E 5 HOH A 72 1073 73 HOH HOH . 
E 5 HOH A 73 1074 74 HOH HOH . 
E 5 HOH A 74 1075 75 HOH HOH . 
E 5 HOH A 75 1076 76 HOH HOH . 
E 5 HOH A 76 1077 77 HOH HOH . 
E 5 HOH A 77 1078 78 HOH HOH . 
E 5 HOH A 78 1079 79 HOH HOH . 
E 5 HOH A 79 1080 80 HOH HOH . 
E 5 HOH A 80 1081 81 HOH HOH . 
E 5 HOH A 81 1082 82 HOH HOH . 
E 5 HOH A 82 1083 83 HOH HOH . 
E 5 HOH A 83 1084 84 HOH HOH . 
E 5 HOH A 84 1085 85 HOH HOH . 
E 5 HOH A 85 1086 86 HOH HOH . 
E 5 HOH A 86 1087 87 HOH HOH . 
E 5 HOH A 87 1088 88 HOH HOH . 
E 5 HOH A 88 1089 89 HOH HOH . 
E 5 HOH A 89 1090 90 HOH HOH . 
E 5 HOH A 90 1091 91 HOH HOH . 
E 5 HOH A 91 1092 92 HOH HOH . 
E 5 HOH A 92 1093 93 HOH HOH . 
E 5 HOH A 93 1094 94 HOH HOH . 
E 5 HOH A 94 1095 95 HOH HOH . 
E 5 HOH A 95 1096 96 HOH HOH . 
E 5 HOH A 96 1097 97 HOH HOH . 
E 5 HOH A 97 1098 98 HOH HOH . 
E 5 HOH A 98 1099 99 HOH HOH . 
E 5 HOH A 99 1100 100 HOH HOH . 
E 5 HOH A 100 1101 101 HOH HOH . 
E 5 HOH A 101 1102 102 HOH HOH . 
E 5 HOH A 102 1103 103 HOH HOH . 
E 5 HOH A 103 1104 104 HOH HOH . 
E 5 HOH A 104 1105 105 HOH HOH . 
E 5 HOH A 105 1106 106 HOH HOH . 
E 5 HOH A 106 1107 107 HOH HOH . 
E 5 HOH A 107 1108 109 HOH HOH . 
E 5 HOH A 108 1109 110 HOH HOH . 
E 5 HOH A 109 1110 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 BBM . . . D 4 30.552 29.231 41.114 1 51.09 ? O1 BBM 1001 A 1 
HETATM 2 C C7 BBM . . . D 4 30.671 28.858 39.959 1 52.95 ? C7 BBM 1001 A 1 
HETATM 3 N N2 BBM . . . D 4 30.599 29.713 38.94 1 49.74 ? N2 BBM 1001 A 1 
HETATM 4 O O4 BBM . . . D 4 30.009 31.006 39.15 1 47.56 ? O4 BBM 1001 A 1 
HETATM 5 C C15 BBM . . . D 4 28.711 31.313 38.642 1 45.59 ? C15 BBM 1001 A 1 
HETATM 6 C C16 BBM . . . D 4 27.694 31.376 39.779 1 44.84 ? C16 BBM 1001 A 1 
HETATM 7 C C17 BBM . . . D 4 26.428 32.059 39.278 1 44.51 ? C17 BBM 1001 A 1 
HETATM 8 O O3 BBM . . . D 4 26.665 33.466 39.165 1 44.36 ? O3 BBM 1001 A 1 
HETATM 9 O O2 BBM . . . D 4 28.214 32.104 40.9 1 44.08 ? O2 BBM 1001 A 1 
HETATM 10 C C8 BBM . . . D 4 30.849 27.387 39.707 1 57.77 ? C8 BBM 1001 A 1 
HETATM 11 C C9 BBM . . . D 4 30.275 26.843 38.555 1 64.45 ? C9 BBM 1001 A 1 
HETATM 12 C C10 BBM . . . D 4 30.374 25.487 38.243 1 72.44 ? C10 BBM 1001 A 1 
HETATM 13 BR BR BBM . . . D 4 29.564 24.839 36.661 1 74.01 ? BR BBM 1001 A 1 
HETATM 14 C C11 BBM . . . D 4 31.094 24.536 39.132 1 78.28 ? C11 BBM 1001 A 1 
HETATM 15 F F1 BBM . . . D 4 31.174 23.236 38.745 1 104.18 ? F1 BBM 1001 A 1 
HETATM 16 C C12 BBM . . . D 4 31.717 25.061 40.388 1 68.38 ? C12 BBM 1001 A 1 
HETATM 17 F F2 BBM . . . D 4 32.361 24.263 41.277 1 81.66 ? F2 BBM 1001 A 1 
HETATM 18 C C13 BBM . . . D 4 31.599 26.519 40.678 1 59.3 ? C13 BBM 1001 A 1 
HETATM 19 N N BBM . . . D 4 32.182 27.03 41.804 1 54.46 ? N BBM 1001 A 1 
HETATM 20 C C3 BBM . . . D 4 33.549 27.054 42.024 1 49.59 ? C3 BBM 1001 A 1 
HETATM 21 C C26 BBM . . . D 4 34.085 27.897 43.124 1 45.94 ? C26 BBM 1001 A 1 
HETATM 22 F F3 BBM . . . D 4 33.222 28.621 43.853 1 43.21 ? F3 BBM 1001 A 1 
HETATM 23 C C4 BBM . . . D 4 34.499 26.319 41.301 1 46.53 ? C4 BBM 1001 A 1 
HETATM 24 C C5 BBM . . . D 4 35.865 26.393 41.611 1 39.21 ? C5 BBM 1001 A 1 
HETATM 25 C C6 BBM . . . D 4 36.36 27.19 42.649 1 34.9 ? C6 BBM 1001 A 1 
HETATM 26 I I BBM . . . D 4 38.431 27.256 43.053 1 14.2 ? I BBM 1001 A 1 
HETATM 27 C C1 BBM . . . D 4 35.456 27.941 43.397 1 37.72 ? C1 BBM 1001 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#