data_1S9J # _model_server_result.job_id k1e-ZNoLMiM5vX0UB2dU6g _model_server_result.datetime_utc '2024-11-07 14:32:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1s9j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":535}' # _entry.id 1S9J # _exptl.entry_id 1S9J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1S9J _cell.length_a 81.591 _cell.length_b 81.591 _cell.length_c 129.213 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1S9J _symmetry.cell_setting ? _symmetry.Int_Tables_number 171 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 40.7955 70.659879 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc3 C O1B ATP . A ATP 535 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc4 C O2A ATP . A ATP 535 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc5 B MG MG . A MG 536 1_555 E O HOH . A HOH 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc6 B MG MG . A MG 536 1_555 E O HOH . A HOH 1098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1S9J _atom_sites.fract_transf_matrix[1][1] 0.012256 _atom_sites.fract_transf_matrix[1][2] 0.007076 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 536 536 MG MG . C 3 ATP A 1 535 535 ATP ATP . D 4 BBM A 1 1001 1001 BBM BBM . E 5 HOH A 1 1002 1 HOH HOH . E 5 HOH A 2 1003 2 HOH HOH . E 5 HOH A 3 1004 3 HOH HOH . E 5 HOH A 4 1005 4 HOH HOH . E 5 HOH A 5 1006 5 HOH HOH . E 5 HOH A 6 1007 6 HOH HOH . E 5 HOH A 7 1008 7 HOH HOH . E 5 HOH A 8 1009 8 HOH HOH . E 5 HOH A 9 1010 9 HOH HOH . E 5 HOH A 10 1011 10 HOH HOH . E 5 HOH A 11 1012 11 HOH HOH . E 5 HOH A 12 1013 12 HOH HOH . E 5 HOH A 13 1014 13 HOH HOH . E 5 HOH A 14 1015 14 HOH HOH . E 5 HOH A 15 1016 15 HOH HOH . E 5 HOH A 16 1017 16 HOH HOH . E 5 HOH A 17 1018 17 HOH HOH . E 5 HOH A 18 1019 18 HOH HOH . E 5 HOH A 19 1020 19 HOH HOH . E 5 HOH A 20 1021 20 HOH HOH . E 5 HOH A 21 1022 21 HOH HOH . E 5 HOH A 22 1023 22 HOH HOH . E 5 HOH A 23 1024 23 HOH HOH . E 5 HOH A 24 1025 24 HOH HOH . E 5 HOH A 25 1026 25 HOH HOH . E 5 HOH A 26 1027 26 HOH HOH . E 5 HOH A 27 1028 27 HOH HOH . E 5 HOH A 28 1029 28 HOH HOH . E 5 HOH A 29 1030 29 HOH HOH . E 5 HOH A 30 1031 30 HOH HOH . E 5 HOH A 31 1032 31 HOH HOH . E 5 HOH A 32 1033 32 HOH HOH . E 5 HOH A 33 1034 33 HOH HOH . E 5 HOH A 34 1035 34 HOH HOH . E 5 HOH A 35 1036 35 HOH HOH . E 5 HOH A 36 1037 36 HOH HOH . E 5 HOH A 37 1038 37 HOH HOH . E 5 HOH A 38 1039 38 HOH HOH . E 5 HOH A 39 1040 39 HOH HOH . E 5 HOH A 40 1041 40 HOH HOH . E 5 HOH A 41 1042 41 HOH HOH . E 5 HOH A 42 1043 42 HOH HOH . E 5 HOH A 43 1044 43 HOH HOH . E 5 HOH A 44 1045 44 HOH HOH . E 5 HOH A 45 1046 45 HOH HOH . E 5 HOH A 46 1047 46 HOH HOH . E 5 HOH A 47 1048 47 HOH HOH . E 5 HOH A 48 1049 48 HOH HOH . E 5 HOH A 49 1050 49 HOH HOH . E 5 HOH A 50 1051 50 HOH HOH . E 5 HOH A 51 1052 51 HOH HOH . E 5 HOH A 52 1053 52 HOH HOH . E 5 HOH A 53 1054 53 HOH HOH . E 5 HOH A 54 1055 54 HOH HOH . E 5 HOH A 55 1056 55 HOH HOH . E 5 HOH A 56 1057 56 HOH HOH . E 5 HOH A 57 1058 57 HOH HOH . E 5 HOH A 58 1059 58 HOH HOH . E 5 HOH A 59 1060 59 HOH HOH . E 5 HOH A 60 1061 60 HOH HOH . E 5 HOH A 61 1062 61 HOH HOH . E 5 HOH A 62 1063 62 HOH HOH . E 5 HOH A 63 1064 63 HOH HOH . E 5 HOH A 64 1065 64 HOH HOH . E 5 HOH A 65 1066 65 HOH HOH . E 5 HOH A 66 1067 66 HOH HOH . E 5 HOH A 67 1068 67 HOH HOH . E 5 HOH A 68 1069 68 HOH HOH . E 5 HOH A 69 1070 69 HOH HOH . E 5 HOH A 70 1071 71 HOH HOH . E 5 HOH A 71 1072 72 HOH HOH . E 5 HOH A 72 1073 73 HOH HOH . E 5 HOH A 73 1074 74 HOH HOH . E 5 HOH A 74 1075 75 HOH HOH . E 5 HOH A 75 1076 76 HOH HOH . E 5 HOH A 76 1077 77 HOH HOH . E 5 HOH A 77 1078 78 HOH HOH . E 5 HOH A 78 1079 79 HOH HOH . E 5 HOH A 79 1080 80 HOH HOH . E 5 HOH A 80 1081 81 HOH HOH . E 5 HOH A 81 1082 82 HOH HOH . E 5 HOH A 82 1083 83 HOH HOH . E 5 HOH A 83 1084 84 HOH HOH . E 5 HOH A 84 1085 85 HOH HOH . E 5 HOH A 85 1086 86 HOH HOH . E 5 HOH A 86 1087 87 HOH HOH . E 5 HOH A 87 1088 88 HOH HOH . E 5 HOH A 88 1089 89 HOH HOH . E 5 HOH A 89 1090 90 HOH HOH . E 5 HOH A 90 1091 91 HOH HOH . E 5 HOH A 91 1092 92 HOH HOH . E 5 HOH A 92 1093 93 HOH HOH . E 5 HOH A 93 1094 94 HOH HOH . E 5 HOH A 94 1095 95 HOH HOH . E 5 HOH A 95 1096 96 HOH HOH . E 5 HOH A 96 1097 97 HOH HOH . E 5 HOH A 97 1098 98 HOH HOH . E 5 HOH A 98 1099 99 HOH HOH . E 5 HOH A 99 1100 100 HOH HOH . E 5 HOH A 100 1101 101 HOH HOH . E 5 HOH A 101 1102 102 HOH HOH . E 5 HOH A 102 1103 103 HOH HOH . E 5 HOH A 103 1104 104 HOH HOH . E 5 HOH A 104 1105 105 HOH HOH . E 5 HOH A 105 1106 106 HOH HOH . E 5 HOH A 106 1107 107 HOH HOH . E 5 HOH A 107 1108 109 HOH HOH . E 5 HOH A 108 1109 110 HOH HOH . E 5 HOH A 109 1110 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 28.599 36 37.108 1 54.66 ? PG ATP 535 A 1 HETATM 2 O O1G ATP . . . C 3 28.127 36.706 35.868 1 55.89 ? O1G ATP 535 A 1 HETATM 3 O O2G ATP . . . C 3 29.472 34.809 36.823 1 56.61 ? O2G ATP 535 A 1 HETATM 4 O O3G ATP . . . C 3 27.502 35.754 38.085 1 55.42 ? O3G ATP 535 A 1 HETATM 5 P PB ATP . . . C 3 30.586 36.832 38.973 1 52.07 ? PB ATP 535 A 1 HETATM 6 O O1B ATP . . . C 3 31.6 35.83 38.493 1 53.65 ? O1B ATP 535 A 1 HETATM 7 O O2B ATP . . . C 3 31.054 38.181 39.43 1 53.5 ? O2B ATP 535 A 1 HETATM 8 O O3B ATP . . . C 3 29.536 37.109 37.789 1 54.99 ? O3B ATP 535 A 1 HETATM 9 P PA ATP . . . C 3 30.307 35.353 41.385 1 54.21 ? PA ATP 535 A 1 HETATM 10 O O1A ATP . . . C 3 29.195 35.077 42.35 1 55.59 ? O1A ATP 535 A 1 HETATM 11 O O2A ATP . . . C 3 31.1 34.198 40.845 1 55.43 ? O2A ATP 535 A 1 HETATM 12 O O3A ATP . . . C 3 29.695 36.171 40.14 1 54.29 ? O3A ATP 535 A 1 HETATM 13 O O5' ATP . . . C 3 31.312 36.38 42.097 1 57.85 ? O5' ATP 535 A 1 HETATM 14 C C5' ATP . . . C 3 30.85 37.638 42.573 1 60.82 ? C5' ATP 535 A 1 HETATM 15 C C4' ATP . . . C 3 32.006 38.573 42.915 1 62.39 ? C4' ATP 535 A 1 HETATM 16 O O4' ATP . . . C 3 32.616 38.155 44.137 1 62.79 ? O4' ATP 535 A 1 HETATM 17 C C3' ATP . . . C 3 33.119 38.651 41.875 1 63.07 ? C3' ATP 535 A 1 HETATM 18 O O3' ATP . . . C 3 32.946 39.754 40.998 1 63.61 ? O3' ATP 535 A 1 HETATM 19 C C2' ATP . . . C 3 34.391 38.793 42.687 1 63.12 ? C2' ATP 535 A 1 HETATM 20 O O2' ATP . . . C 3 34.84 40.14 42.698 1 62.85 ? O2' ATP 535 A 1 HETATM 21 C C1' ATP . . . C 3 34.027 38.358 44.097 1 62.99 ? C1' ATP 535 A 1 HETATM 22 N N9 ATP . . . C 3 34.718 37.097 44.456 1 62.96 ? N9 ATP 535 A 1 HETATM 23 C C8 ATP . . . C 3 34.307 35.852 44.153 1 62.92 ? C8 ATP 535 A 1 HETATM 24 N N7 ATP . . . C 3 35.176 34.933 44.638 1 62.74 ? N7 ATP 535 A 1 HETATM 25 C C5 ATP . . . C 3 36.161 35.586 45.259 1 62.96 ? C5 ATP 535 A 1 HETATM 26 C C6 ATP . . . C 3 37.402 35.226 45.988 1 62.79 ? C6 ATP 535 A 1 HETATM 27 N N6 ATP . . . C 3 37.769 33.935 46.152 1 62.32 ? N6 ATP 535 A 1 HETATM 28 N N1 ATP . . . C 3 38.148 36.222 46.479 1 62.59 ? N1 ATP 535 A 1 HETATM 29 C C2 ATP . . . C 3 37.809 37.516 46.331 1 62.75 ? C2 ATP 535 A 1 HETATM 30 N N3 ATP . . . C 3 36.699 37.908 45.681 1 62.86 ? N3 ATP 535 A 1 HETATM 31 C C4 ATP . . . C 3 35.858 37.018 45.138 1 63.07 ? C4 ATP 535 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #