data_1S9J
#
_model_server_result.job_id            18NT3yPEkfjVrkbWS8BvFw 
_model_server_result.datetime_utc      '2024-11-26 03:40:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1s9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":535}' 
#
_entry.id    1S9J 
#
_exptl.entry_id    1S9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1S9J 
_cell.length_a            81.591 
_cell.length_b            81.591 
_cell.length_c            129.213 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1S9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        171 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 40.7955 70.659879 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 135 A ASN 195 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? 
metalc ? metalc2 A OD2 ASP 148 A ASP 208 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc3 C O1B ATP . A ATP 535 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc4 C O2A ATP . A ATP 535 1_555 B MG MG . A MG 536 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc5 B MG MG . A MG 536 1_555 E O HOH . A HOH 1097 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc6 B MG MG . A MG 536 1_555 E O HOH . A HOH 1098 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     1S9J 
_atom_sites.fract_transf_matrix[1][1]    0.012256 
_atom_sites.fract_transf_matrix[1][2]    0.007076 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014152 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007739 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 536 536 MG MG . 
C 3 ATP A 1 535 535 ATP ATP . 
D 4 BBM A 1 1001 1001 BBM BBM . 
E 5 HOH A 1 1002 1 HOH HOH . 
E 5 HOH A 2 1003 2 HOH HOH . 
E 5 HOH A 3 1004 3 HOH HOH . 
E 5 HOH A 4 1005 4 HOH HOH . 
E 5 HOH A 5 1006 5 HOH HOH . 
E 5 HOH A 6 1007 6 HOH HOH . 
E 5 HOH A 7 1008 7 HOH HOH . 
E 5 HOH A 8 1009 8 HOH HOH . 
E 5 HOH A 9 1010 9 HOH HOH . 
E 5 HOH A 10 1011 10 HOH HOH . 
E 5 HOH A 11 1012 11 HOH HOH . 
E 5 HOH A 12 1013 12 HOH HOH . 
E 5 HOH A 13 1014 13 HOH HOH . 
E 5 HOH A 14 1015 14 HOH HOH . 
E 5 HOH A 15 1016 15 HOH HOH . 
E 5 HOH A 16 1017 16 HOH HOH . 
E 5 HOH A 17 1018 17 HOH HOH . 
E 5 HOH A 18 1019 18 HOH HOH . 
E 5 HOH A 19 1020 19 HOH HOH . 
E 5 HOH A 20 1021 20 HOH HOH . 
E 5 HOH A 21 1022 21 HOH HOH . 
E 5 HOH A 22 1023 22 HOH HOH . 
E 5 HOH A 23 1024 23 HOH HOH . 
E 5 HOH A 24 1025 24 HOH HOH . 
E 5 HOH A 25 1026 25 HOH HOH . 
E 5 HOH A 26 1027 26 HOH HOH . 
E 5 HOH A 27 1028 27 HOH HOH . 
E 5 HOH A 28 1029 28 HOH HOH . 
E 5 HOH A 29 1030 29 HOH HOH . 
E 5 HOH A 30 1031 30 HOH HOH . 
E 5 HOH A 31 1032 31 HOH HOH . 
E 5 HOH A 32 1033 32 HOH HOH . 
E 5 HOH A 33 1034 33 HOH HOH . 
E 5 HOH A 34 1035 34 HOH HOH . 
E 5 HOH A 35 1036 35 HOH HOH . 
E 5 HOH A 36 1037 36 HOH HOH . 
E 5 HOH A 37 1038 37 HOH HOH . 
E 5 HOH A 38 1039 38 HOH HOH . 
E 5 HOH A 39 1040 39 HOH HOH . 
E 5 HOH A 40 1041 40 HOH HOH . 
E 5 HOH A 41 1042 41 HOH HOH . 
E 5 HOH A 42 1043 42 HOH HOH . 
E 5 HOH A 43 1044 43 HOH HOH . 
E 5 HOH A 44 1045 44 HOH HOH . 
E 5 HOH A 45 1046 45 HOH HOH . 
E 5 HOH A 46 1047 46 HOH HOH . 
E 5 HOH A 47 1048 47 HOH HOH . 
E 5 HOH A 48 1049 48 HOH HOH . 
E 5 HOH A 49 1050 49 HOH HOH . 
E 5 HOH A 50 1051 50 HOH HOH . 
E 5 HOH A 51 1052 51 HOH HOH . 
E 5 HOH A 52 1053 52 HOH HOH . 
E 5 HOH A 53 1054 53 HOH HOH . 
E 5 HOH A 54 1055 54 HOH HOH . 
E 5 HOH A 55 1056 55 HOH HOH . 
E 5 HOH A 56 1057 56 HOH HOH . 
E 5 HOH A 57 1058 57 HOH HOH . 
E 5 HOH A 58 1059 58 HOH HOH . 
E 5 HOH A 59 1060 59 HOH HOH . 
E 5 HOH A 60 1061 60 HOH HOH . 
E 5 HOH A 61 1062 61 HOH HOH . 
E 5 HOH A 62 1063 62 HOH HOH . 
E 5 HOH A 63 1064 63 HOH HOH . 
E 5 HOH A 64 1065 64 HOH HOH . 
E 5 HOH A 65 1066 65 HOH HOH . 
E 5 HOH A 66 1067 66 HOH HOH . 
E 5 HOH A 67 1068 67 HOH HOH . 
E 5 HOH A 68 1069 68 HOH HOH . 
E 5 HOH A 69 1070 69 HOH HOH . 
E 5 HOH A 70 1071 71 HOH HOH . 
E 5 HOH A 71 1072 72 HOH HOH . 
E 5 HOH A 72 1073 73 HOH HOH . 
E 5 HOH A 73 1074 74 HOH HOH . 
E 5 HOH A 74 1075 75 HOH HOH . 
E 5 HOH A 75 1076 76 HOH HOH . 
E 5 HOH A 76 1077 77 HOH HOH . 
E 5 HOH A 77 1078 78 HOH HOH . 
E 5 HOH A 78 1079 79 HOH HOH . 
E 5 HOH A 79 1080 80 HOH HOH . 
E 5 HOH A 80 1081 81 HOH HOH . 
E 5 HOH A 81 1082 82 HOH HOH . 
E 5 HOH A 82 1083 83 HOH HOH . 
E 5 HOH A 83 1084 84 HOH HOH . 
E 5 HOH A 84 1085 85 HOH HOH . 
E 5 HOH A 85 1086 86 HOH HOH . 
E 5 HOH A 86 1087 87 HOH HOH . 
E 5 HOH A 87 1088 88 HOH HOH . 
E 5 HOH A 88 1089 89 HOH HOH . 
E 5 HOH A 89 1090 90 HOH HOH . 
E 5 HOH A 90 1091 91 HOH HOH . 
E 5 HOH A 91 1092 92 HOH HOH . 
E 5 HOH A 92 1093 93 HOH HOH . 
E 5 HOH A 93 1094 94 HOH HOH . 
E 5 HOH A 94 1095 95 HOH HOH . 
E 5 HOH A 95 1096 96 HOH HOH . 
E 5 HOH A 96 1097 97 HOH HOH . 
E 5 HOH A 97 1098 98 HOH HOH . 
E 5 HOH A 98 1099 99 HOH HOH . 
E 5 HOH A 99 1100 100 HOH HOH . 
E 5 HOH A 100 1101 101 HOH HOH . 
E 5 HOH A 101 1102 102 HOH HOH . 
E 5 HOH A 102 1103 103 HOH HOH . 
E 5 HOH A 103 1104 104 HOH HOH . 
E 5 HOH A 104 1105 105 HOH HOH . 
E 5 HOH A 105 1106 106 HOH HOH . 
E 5 HOH A 106 1107 107 HOH HOH . 
E 5 HOH A 107 1108 109 HOH HOH . 
E 5 HOH A 108 1109 110 HOH HOH . 
E 5 HOH A 109 1110 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 28.599 36 37.108 1 54.66 ? PG ATP 535 A 1 
HETATM 2 O O1G ATP . . . C 3 28.127 36.706 35.868 1 55.89 ? O1G ATP 535 A 1 
HETATM 3 O O2G ATP . . . C 3 29.472 34.809 36.823 1 56.61 ? O2G ATP 535 A 1 
HETATM 4 O O3G ATP . . . C 3 27.502 35.754 38.085 1 55.42 ? O3G ATP 535 A 1 
HETATM 5 P PB ATP . . . C 3 30.586 36.832 38.973 1 52.07 ? PB ATP 535 A 1 
HETATM 6 O O1B ATP . . . C 3 31.6 35.83 38.493 1 53.65 ? O1B ATP 535 A 1 
HETATM 7 O O2B ATP . . . C 3 31.054 38.181 39.43 1 53.5 ? O2B ATP 535 A 1 
HETATM 8 O O3B ATP . . . C 3 29.536 37.109 37.789 1 54.99 ? O3B ATP 535 A 1 
HETATM 9 P PA ATP . . . C 3 30.307 35.353 41.385 1 54.21 ? PA ATP 535 A 1 
HETATM 10 O O1A ATP . . . C 3 29.195 35.077 42.35 1 55.59 ? O1A ATP 535 A 1 
HETATM 11 O O2A ATP . . . C 3 31.1 34.198 40.845 1 55.43 ? O2A ATP 535 A 1 
HETATM 12 O O3A ATP . . . C 3 29.695 36.171 40.14 1 54.29 ? O3A ATP 535 A 1 
HETATM 13 O O5' ATP . . . C 3 31.312 36.38 42.097 1 57.85 ? O5' ATP 535 A 1 
HETATM 14 C C5' ATP . . . C 3 30.85 37.638 42.573 1 60.82 ? C5' ATP 535 A 1 
HETATM 15 C C4' ATP . . . C 3 32.006 38.573 42.915 1 62.39 ? C4' ATP 535 A 1 
HETATM 16 O O4' ATP . . . C 3 32.616 38.155 44.137 1 62.79 ? O4' ATP 535 A 1 
HETATM 17 C C3' ATP . . . C 3 33.119 38.651 41.875 1 63.07 ? C3' ATP 535 A 1 
HETATM 18 O O3' ATP . . . C 3 32.946 39.754 40.998 1 63.61 ? O3' ATP 535 A 1 
HETATM 19 C C2' ATP . . . C 3 34.391 38.793 42.687 1 63.12 ? C2' ATP 535 A 1 
HETATM 20 O O2' ATP . . . C 3 34.84 40.14 42.698 1 62.85 ? O2' ATP 535 A 1 
HETATM 21 C C1' ATP . . . C 3 34.027 38.358 44.097 1 62.99 ? C1' ATP 535 A 1 
HETATM 22 N N9 ATP . . . C 3 34.718 37.097 44.456 1 62.96 ? N9 ATP 535 A 1 
HETATM 23 C C8 ATP . . . C 3 34.307 35.852 44.153 1 62.92 ? C8 ATP 535 A 1 
HETATM 24 N N7 ATP . . . C 3 35.176 34.933 44.638 1 62.74 ? N7 ATP 535 A 1 
HETATM 25 C C5 ATP . . . C 3 36.161 35.586 45.259 1 62.96 ? C5 ATP 535 A 1 
HETATM 26 C C6 ATP . . . C 3 37.402 35.226 45.988 1 62.79 ? C6 ATP 535 A 1 
HETATM 27 N N6 ATP . . . C 3 37.769 33.935 46.152 1 62.32 ? N6 ATP 535 A 1 
HETATM 28 N N1 ATP . . . C 3 38.148 36.222 46.479 1 62.59 ? N1 ATP 535 A 1 
HETATM 29 C C2 ATP . . . C 3 37.809 37.516 46.331 1 62.75 ? C2 ATP 535 A 1 
HETATM 30 N N3 ATP . . . C 3 36.699 37.908 45.681 1 62.86 ? N3 ATP 535 A 1 
HETATM 31 C C4 ATP . . . C 3 35.858 37.018 45.138 1 63.07 ? C4 ATP 535 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           334 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           31 
#