data_1SA0 # _model_server_result.job_id ZF_8rlYEml5ieJeMkY1omg _model_server_result.datetime_utc '2024-11-24 11:08:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sa0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 1SA0 # _exptl.entry_id 1SA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SA0 _cell.length_a 328.69 _cell.length_b 328.691 _cell.length_c 54.679 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N GLY 144 A GLY 144 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc2 F MG MG . A MG 501 1_555 G O2G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc3 F MG MG . A MG 501 1_555 G O3G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 F MG MG . A MG 501 1_555 G O2B GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc5 B ND2 ASN 99 B ASN 101 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc6 H MG MG . B MG 502 1_555 I O2A GDP . B GDP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc7 C N GLY 144 C GLY 144 1_555 K MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? metalc ? metalc8 K MG MG . C MG 503 1_555 L O2B GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc9 K MG MG . C MG 503 1_555 L O3G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc10 K MG MG . C MG 503 1_555 L O2G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 231 n n PG O2G GTP sing 232 n n PG O3G GTP sing 233 n n PG O3B GTP sing 234 n n O2G HOG2 GTP sing 235 n n O3G HOG3 GTP sing 236 n n O3B PB GTP sing 237 n n PB O1B GTP doub 238 n n PB O2B GTP sing 239 n n PB O3A GTP sing 240 n n O2B HOB2 GTP sing 241 n n O3A PA GTP sing 242 n n PA O1A GTP doub 243 n n PA O2A GTP sing 244 n n PA O5' GTP sing 245 n n O2A HOA2 GTP sing 246 n n O5' C5' GTP sing 247 n n C5' C4' GTP sing 248 n n C5' H5' GTP sing 249 n n C5' "H5''" GTP sing 250 n n C4' O4' GTP sing 251 n n C4' C3' GTP sing 252 n n C4' H4' GTP sing 253 n n O4' C1' GTP sing 254 n n C3' O3' GTP sing 255 n n C3' C2' GTP sing 256 n n C3' H3' GTP sing 257 n n O3' HO3' GTP sing 258 n n C2' O2' GTP sing 259 n n C2' C1' GTP sing 260 n n C2' H2' GTP sing 261 n n O2' HO2' GTP sing 262 n n C1' N9 GTP sing 263 n n C1' H1' GTP sing 264 n n N9 C8 GTP sing 265 n y N9 C4 GTP sing 266 n y C8 N7 GTP doub 267 n y C8 H8 GTP sing 268 n n N7 C5 GTP sing 269 n y C5 C6 GTP sing 270 n n C5 C4 GTP doub 271 n y C6 O6 GTP doub 272 n n C6 N1 GTP sing 273 n n N1 C2 GTP sing 274 n n N1 HN1 GTP sing 275 n n C2 N2 GTP sing 276 n n C2 N3 GTP doub 277 n n N2 HN21 GTP sing 278 n n N2 HN22 GTP sing 279 n n N3 C4 GTP sing 280 n n # _atom_sites.entry_id 1SA0 _atom_sites.fract_transf_matrix[1][1] 0.003042 _atom_sites.fract_transf_matrix[1][2] 0.001757 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 MG A 1 501 601 MG MG . G 5 GTP A 1 600 600 GTP GTP . H 4 MG B 1 502 601 MG MG . I 6 GDP B 1 602 600 GDP GDP . J 7 CN2 B 1 700 700 CN2 COL . K 4 MG C 1 503 601 MG MG . L 5 GTP C 1 601 600 GTP GTP . M 6 GDP D 1 603 600 GDP GDP . N 7 CN2 D 1 701 700 CN2 COL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 5 123.11 92.606 17.822 1 83.07 ? PG GTP 600 A 1 HETATM 2 O O1G GTP . . . G 5 123.792 91.282 17.629 1 83.07 ? O1G GTP 600 A 1 HETATM 3 O O2G GTP . . . G 5 122.462 92.778 19.218 1 83.07 ? O2G GTP 600 A 1 HETATM 4 O O3G GTP . . . G 5 121.897 92.925 16.875 1 83.07 ? O3G GTP 600 A 1 HETATM 5 O O3B GTP . . . G 5 124.275 93.736 17.67 1 83.07 ? O3B GTP 600 A 1 HETATM 6 P PB GTP . . . G 5 123.79 95.291 17.676 1 83.07 ? PB GTP 600 A 1 HETATM 7 O O1B GTP . . . G 5 124.804 96.058 18.462 1 83.07 ? O1B GTP 600 A 1 HETATM 8 O O2B GTP . . . G 5 122.254 95.388 18.082 1 83.07 ? O2B GTP 600 A 1 HETATM 9 O O3A GTP . . . G 5 123.999 95.773 16.126 1 83.07 ? O3A GTP 600 A 1 HETATM 10 P PA GTP . . . G 5 125.222 95.35 15.148 1 83.07 ? PA GTP 600 A 1 HETATM 11 O O1A GTP . . . G 5 124.977 94.073 14.416 1 83.07 ? O1A GTP 600 A 1 HETATM 12 O O2A GTP . . . G 5 126.468 95.262 16.03 1 83.07 ? O2A GTP 600 A 1 HETATM 13 O O5' GTP . . . G 5 125.23 96.649 14.201 1 83.07 ? O5' GTP 600 A 1 HETATM 14 C C5' GTP . . . G 5 124.878 96.568 12.84 1 83.07 ? C5' GTP 600 A 1 HETATM 15 C C4' GTP . . . G 5 125.849 97.5 12.125 1 83.07 ? C4' GTP 600 A 1 HETATM 16 O O4' GTP . . . G 5 127.129 97.135 12.556 1 83.07 ? O4' GTP 600 A 1 HETATM 17 C C3' GTP . . . G 5 125.87 97.412 10.607 1 83.07 ? C3' GTP 600 A 1 HETATM 18 O O3' GTP . . . G 5 126.156 98.739 10.213 1 83.07 ? O3' GTP 600 A 1 HETATM 19 C C2' GTP . . . G 5 127.01 96.468 10.267 1 83.07 ? C2' GTP 600 A 1 HETATM 20 O O2' GTP . . . G 5 127.617 96.743 9.014 1 83.07 ? O2' GTP 600 A 1 HETATM 21 C C1' GTP . . . G 5 127.928 96.73 11.457 1 83.07 ? C1' GTP 600 A 1 HETATM 22 N N9 GTP . . . G 5 128.787 95.639 11.946 1 83.07 ? N9 GTP 600 A 1 HETATM 23 C C8 GTP . . . G 5 128.415 94.497 12.6 1 83.07 ? C8 GTP 600 A 1 HETATM 24 N N7 GTP . . . G 5 129.527 93.784 12.903 1 83.07 ? N7 GTP 600 A 1 HETATM 25 C C5 GTP . . . G 5 130.602 94.478 12.474 1 83.07 ? C5 GTP 600 A 1 HETATM 26 C C6 GTP . . . G 5 131.96 94.223 12.526 1 83.07 ? C6 GTP 600 A 1 HETATM 27 O O6 GTP . . . G 5 132.347 93.188 13.04 1 83.07 ? O6 GTP 600 A 1 HETATM 28 N N1 GTP . . . G 5 132.849 95.128 11.997 1 83.07 ? N1 GTP 600 A 1 HETATM 29 C C2 GTP . . . G 5 132.357 96.276 11.42 1 83.07 ? C2 GTP 600 A 1 HETATM 30 N N2 GTP . . . G 5 133.162 97.175 10.907 1 83.07 ? N2 GTP 600 A 1 HETATM 31 N N3 GTP . . . G 5 131.021 96.531 11.361 1 83.07 ? N3 GTP 600 A 1 HETATM 32 C C4 GTP . . . G 5 130.151 95.646 11.883 1 83.07 ? C4 GTP 600 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #