data_1SA0 # _model_server_result.job_id 7UgsRcLTjbyjJwYi8SL-3A _model_server_result.datetime_utc '2024-10-19 19:16:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sa0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":601}' # _entry.id 1SA0 # _exptl.entry_id 1SA0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SA0 _cell.length_a 328.69 _cell.length_b 328.691 _cell.length_c 54.679 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SA0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A N GLY 144 A GLY 144 1_555 F MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.09 ? metalc ? metalc2 F MG MG . A MG 501 1_555 G O2G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.049 ? metalc ? metalc3 F MG MG . A MG 501 1_555 G O3G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc4 F MG MG . A MG 501 1_555 G O2B GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? metalc ? metalc5 B ND2 ASN 99 B ASN 101 1_555 H MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc6 H MG MG . B MG 502 1_555 I O2A GDP . B GDP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc7 C N GLY 144 C GLY 144 1_555 K MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.116 ? metalc ? metalc8 K MG MG . C MG 503 1_555 L O2B GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc9 K MG MG . C MG 503 1_555 L O3G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? metalc ? metalc10 K MG MG . C MG 503 1_555 L O2G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 231 n n PG O2G GTP sing 232 n n PG O3G GTP sing 233 n n PG O3B GTP sing 234 n n O2G HOG2 GTP sing 235 n n O3G HOG3 GTP sing 236 n n O3B PB GTP sing 237 n n PB O1B GTP doub 238 n n PB O2B GTP sing 239 n n PB O3A GTP sing 240 n n O2B HOB2 GTP sing 241 n n O3A PA GTP sing 242 n n PA O1A GTP doub 243 n n PA O2A GTP sing 244 n n PA O5' GTP sing 245 n n O2A HOA2 GTP sing 246 n n O5' C5' GTP sing 247 n n C5' C4' GTP sing 248 n n C5' H5' GTP sing 249 n n C5' "H5''" GTP sing 250 n n C4' O4' GTP sing 251 n n C4' C3' GTP sing 252 n n C4' H4' GTP sing 253 n n O4' C1' GTP sing 254 n n C3' O3' GTP sing 255 n n C3' C2' GTP sing 256 n n C3' H3' GTP sing 257 n n O3' HO3' GTP sing 258 n n C2' O2' GTP sing 259 n n C2' C1' GTP sing 260 n n C2' H2' GTP sing 261 n n O2' HO2' GTP sing 262 n n C1' N9 GTP sing 263 n n C1' H1' GTP sing 264 n n N9 C8 GTP sing 265 n y N9 C4 GTP sing 266 n y C8 N7 GTP doub 267 n y C8 H8 GTP sing 268 n n N7 C5 GTP sing 269 n y C5 C6 GTP sing 270 n n C5 C4 GTP doub 271 n y C6 O6 GTP doub 272 n n C6 N1 GTP sing 273 n n N1 C2 GTP sing 274 n n N1 HN1 GTP sing 275 n n C2 N2 GTP sing 276 n n C2 N3 GTP doub 277 n n N2 HN21 GTP sing 278 n n N2 HN22 GTP sing 279 n n N3 C4 GTP sing 280 n n # _atom_sites.entry_id 1SA0 _atom_sites.fract_transf_matrix[1][1] 0.003042 _atom_sites.fract_transf_matrix[1][2] 0.001757 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003513 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 MG A 1 501 601 MG MG . G 5 GTP A 1 600 600 GTP GTP . H 4 MG B 1 502 601 MG MG . I 6 GDP B 1 602 600 GDP GDP . J 7 CN2 B 1 700 700 CN2 COL . K 4 MG C 1 503 601 MG MG . L 5 GTP C 1 601 600 GTP GTP . M 6 GDP D 1 603 600 GDP GDP . N 7 CN2 D 1 701 700 CN2 COL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . L 5 50.265 52.753 -0.12 1 83.07 ? PG GTP 601 C 1 HETATM 2 O O1G GTP . . . L 5 50.384 51.377 -0.679 1 83.07 ? O1G GTP 601 C 1 HETATM 3 O O2G GTP . . . L 5 50.027 52.658 1.396 1 83.07 ? O2G GTP 601 C 1 HETATM 4 O O3G GTP . . . L 5 49.074 53.604 -0.662 1 83.07 ? O3G GTP 601 C 1 HETATM 5 O O3B GTP . . . L 5 51.678 53.503 -0.432 1 83.07 ? O3B GTP 601 C 1 HETATM 6 P PB GTP . . . L 5 51.781 55.124 -0.344 1 83.07 ? PB GTP 601 C 1 HETATM 7 O O1B GTP . . . L 5 53.136 55.569 0.077 1 83.07 ? O1B GTP 601 C 1 HETATM 8 O O2B GTP . . . L 5 50.594 55.625 0.535 1 83.07 ? O2B GTP 601 C 1 HETATM 9 O O3A GTP . . . L 5 51.526 55.663 -1.851 1 83.07 ? O3A GTP 601 C 1 HETATM 10 P PA GTP . . . L 5 52.247 55.064 -3.171 1 83.07 ? PA GTP 601 C 1 HETATM 11 O O1A GTP . . . L 5 51.379 54.084 -3.888 1 83.07 ? O1A GTP 601 C 1 HETATM 12 O O2A GTP . . . L 5 53.577 54.394 -2.797 1 83.07 ? O2A GTP 601 C 1 HETATM 13 O O5' GTP . . . L 5 52.482 56.419 -4.01 1 83.07 ? O5' GTP 601 C 1 HETATM 14 C C5' GTP . . . L 5 51.831 56.661 -5.234 1 83.07 ? C5' GTP 601 C 1 HETATM 15 C C4' GTP . . . L 5 52.836 57.335 -6.15 1 83.07 ? C4' GTP 601 C 1 HETATM 16 O O4' GTP . . . L 5 53.965 56.519 -6.184 1 83.07 ? O4' GTP 601 C 1 HETATM 17 C C3' GTP . . . L 5 52.412 57.435 -7.59 1 83.07 ? C3' GTP 601 C 1 HETATM 18 O O3' GTP . . . L 5 53.151 58.555 -8.012 1 83.07 ? O3' GTP 601 C 1 HETATM 19 C C2' GTP . . . L 5 52.93 56.173 -8.242 1 83.07 ? C2' GTP 601 C 1 HETATM 20 O O2' GTP . . . L 5 53.212 56.393 -9.601 1 83.07 ? O2' GTP 601 C 1 HETATM 21 C C1' GTP . . . L 5 54.217 56.011 -7.476 1 83.07 ? C1' GTP 601 C 1 HETATM 22 N N9 GTP . . . L 5 54.815 54.686 -7.255 1 83.07 ? N9 GTP 601 C 1 HETATM 23 C C8 GTP . . . L 5 54.326 53.61 -6.558 1 83.07 ? C8 GTP 601 C 1 HETATM 24 N N7 GTP . . . L 5 55.267 52.634 -6.569 1 83.07 ? N7 GTP 601 C 1 HETATM 25 C C5 GTP . . . L 5 56.353 53.096 -7.231 1 83.07 ? C5 GTP 601 C 1 HETATM 26 C C6 GTP . . . L 5 57.585 52.538 -7.537 1 83.07 ? C6 GTP 601 C 1 HETATM 27 O O6 GTP . . . L 5 57.816 51.391 -7.169 1 83.07 ? O6 GTP 601 C 1 HETATM 28 N N1 GTP . . . L 5 58.527 53.275 -8.25 1 83.07 ? N1 GTP 601 C 1 HETATM 29 C C2 GTP . . . L 5 58.236 54.567 -8.659 1 83.07 ? C2 GTP 601 C 1 HETATM 30 N N2 GTP . . . L 5 59.111 55.293 -9.337 1 83.07 ? N2 GTP 601 C 1 HETATM 31 N N3 GTP . . . L 5 57.011 55.111 -8.358 1 83.07 ? N3 GTP 601 C 1 HETATM 32 C C4 GTP . . . L 5 56.088 54.389 -7.657 1 83.07 ? C4 GTP 601 C 1 # _model_server_stats.io_time_ms 172 _model_server_stats.parse_time_ms 125 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 32 #