data_1SA1 # _model_server_result.job_id UM5MgW3pKbi0FrRsjeQF1w _model_server_result.datetime_utc '2024-11-04 22:56:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sa1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":600}' # _entry.id 1SA1 # _exptl.entry_id 1SA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SA1 _cell.length_a 328.061 _cell.length_b 328.061 _cell.length_c 54.301 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F MG MG . A MG 501 1_555 G O2B GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 F MG MG . A MG 501 1_555 G O2G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc3 J MG MG . C MG 502 1_555 K O3G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc4 J MG MG . C MG 502 1_555 K O2G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 174 n n PG O2G GTP sing 175 n n PG O3G GTP sing 176 n n PG O3B GTP sing 177 n n O2G HOG2 GTP sing 178 n n O3G HOG3 GTP sing 179 n n O3B PB GTP sing 180 n n PB O1B GTP doub 181 n n PB O2B GTP sing 182 n n PB O3A GTP sing 183 n n O2B HOB2 GTP sing 184 n n O3A PA GTP sing 185 n n PA O1A GTP doub 186 n n PA O2A GTP sing 187 n n PA O5' GTP sing 188 n n O2A HOA2 GTP sing 189 n n O5' C5' GTP sing 190 n n C5' C4' GTP sing 191 n n C5' H5' GTP sing 192 n n C5' "H5''" GTP sing 193 n n C4' O4' GTP sing 194 n n C4' C3' GTP sing 195 n n C4' H4' GTP sing 196 n n O4' C1' GTP sing 197 n n C3' O3' GTP sing 198 n n C3' C2' GTP sing 199 n n C3' H3' GTP sing 200 n n O3' HO3' GTP sing 201 n n C2' O2' GTP sing 202 n n C2' C1' GTP sing 203 n n C2' H2' GTP sing 204 n n O2' HO2' GTP sing 205 n n C1' N9 GTP sing 206 n n C1' H1' GTP sing 207 n n N9 C8 GTP sing 208 n y N9 C4 GTP sing 209 n y C8 N7 GTP doub 210 n y C8 H8 GTP sing 211 n n N7 C5 GTP sing 212 n y C5 C6 GTP sing 213 n n C5 C4 GTP doub 214 n y C6 O6 GTP doub 215 n n C6 N1 GTP sing 216 n n N1 C2 GTP sing 217 n n N1 HN1 GTP sing 218 n n C2 N2 GTP sing 219 n n C2 N3 GTP doub 220 n n N2 HN21 GTP sing 221 n n N2 HN22 GTP sing 222 n n N3 C4 GTP sing 223 n n # _atom_sites.entry_id 1SA1 _atom_sites.fract_transf_matrix[1][1] 0.003048 _atom_sites.fract_transf_matrix[1][2] 0.00176 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 MG A 1 501 501 MG MG . G 5 GTP A 1 600 600 GTP GTP . H 6 GDP B 1 602 602 GDP GDP . I 7 POD B 1 700 700 POD POD . J 4 MG C 1 502 502 MG MG . K 5 GTP C 1 601 601 GTP GTP . L 6 GDP D 1 603 603 GDP GDP . M 7 POD D 1 701 701 POD POD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 5 122.515 92.619 17.604 1 115.27 ? PG GTP 600 A 1 HETATM 2 O O1G GTP . . . G 5 123.208 91.356 17.494 1 115.57 ? O1G GTP 600 A 1 HETATM 3 O O2G GTP . . . G 5 121.532 92.704 18.737 1 116.02 ? O2G GTP 600 A 1 HETATM 4 O O3G GTP . . . G 5 121.689 92.975 16.392 1 115.99 ? O3G GTP 600 A 1 HETATM 5 O O3B GTP . . . G 5 123.706 93.61 17.871 1 116.09 ? O3B GTP 600 A 1 HETATM 6 P PB GTP . . . G 5 123.721 95.088 17.237 1 116.43 ? PB GTP 600 A 1 HETATM 7 O O1B GTP . . . G 5 124.919 95.809 17.73 1 116.53 ? O1B GTP 600 A 1 HETATM 8 O O2B GTP . . . G 5 122.467 95.882 17.639 1 116.24 ? O2B GTP 600 A 1 HETATM 9 O O3A GTP . . . G 5 123.889 94.905 15.62 1 116.55 ? O3A GTP 600 A 1 HETATM 10 P PA GTP . . . G 5 125.243 95.079 14.7 1 116.34 ? PA GTP 600 A 1 HETATM 11 O O1A GTP . . . G 5 125.25 94.178 13.523 1 116.16 ? O1A GTP 600 A 1 HETATM 12 O O2A GTP . . . G 5 126.476 94.858 15.61 1 116.58 ? O2A GTP 600 A 1 HETATM 13 O O5' GTP . . . G 5 125.28 96.568 14.068 1 116.59 ? O5' GTP 600 A 1 HETATM 14 C C5' GTP . . . G 5 124.778 96.842 12.77 1 116.54 ? C5' GTP 600 A 1 HETATM 15 C C4' GTP . . . G 5 125.825 97.493 11.879 1 116.44 ? C4' GTP 600 A 1 HETATM 16 O O4' GTP . . . G 5 127.086 97.09 12.337 1 116.4 ? O4' GTP 600 A 1 HETATM 17 C C3' GTP . . . G 5 125.694 97.001 10.444 1 116.43 ? C3' GTP 600 A 1 HETATM 18 O O3' GTP . . . G 5 125.813 98.104 9.574 1 116.43 ? O3' GTP 600 A 1 HETATM 19 C C2' GTP . . . G 5 126.851 96.083 10.175 1 116.39 ? C2' GTP 600 A 1 HETATM 20 O O2' GTP . . . G 5 127.433 96.395 8.922 1 116.3 ? O2' GTP 600 A 1 HETATM 21 C C1' GTP . . . G 5 127.802 96.445 11.298 1 116.44 ? C1' GTP 600 A 1 HETATM 22 N N9 GTP . . . G 5 128.649 95.33 11.775 1 116.39 ? N9 GTP 600 A 1 HETATM 23 C C8 GTP . . . G 5 128.349 94.145 12.392 1 116.4 ? C8 GTP 600 A 1 HETATM 24 N N7 GTP . . . G 5 129.504 93.484 12.626 1 116.22 ? N7 GTP 600 A 1 HETATM 25 C C5 GTP . . . G 5 130.518 94.243 12.171 1 116.27 ? C5 GTP 600 A 1 HETATM 26 C C6 GTP . . . G 5 131.893 94.108 12.125 1 116.42 ? C6 GTP 600 A 1 HETATM 27 O O6 GTP . . . G 5 132.419 93.112 12.561 1 116.61 ? O6 GTP 600 A 1 HETATM 28 N N1 GTP . . . G 5 132.708 95.07 11.581 1 116.54 ? N1 GTP 600 A 1 HETATM 29 C C2 GTP . . . G 5 132.134 96.207 11.069 1 116.59 ? C2 GTP 600 A 1 HETATM 30 N N2 GTP . . . G 5 132.869 97.181 10.533 1 116.63 ? N2 GTP 600 A 1 HETATM 31 N N3 GTP . . . G 5 130.77 96.333 11.105 1 116.55 ? N3 GTP 600 A 1 HETATM 32 C C4 GTP . . . G 5 129.989 95.383 11.644 1 116.34 ? C4 GTP 600 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 32 #