data_1SA1 # _model_server_result.job_id dJcIar27h5VsJB6lqaxeCw _model_server_result.datetime_utc '2024-11-24 13:23:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sa1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":700}' # _entry.id 1SA1 # _exptl.entry_id 1SA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.405 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "9-HYDROXY-5-(3,4,5-TRIMETHOXYPHENYL)-5,8,8A,9-TETRAHYDROFURO[3',4':6,7]NAPHTHO[2,3-D][1,3]DIOXOL-6(5AH)-ONE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SA1 _cell.length_a 328.061 _cell.length_b 328.061 _cell.length_c 54.301 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F MG MG . A MG 501 1_555 G O2B GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 F MG MG . A MG 501 1_555 G O2G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc3 J MG MG . C MG 502 1_555 K O3G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc4 J MG MG . C MG 502 1_555 K O2G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C22 H22 O8' _chem_comp.formula_weight 414.405 _chem_comp.id POD _chem_comp.mon_nstd_flag . _chem_comp.name "9-HYDROXY-5-(3,4,5-TRIMETHOXYPHENYL)-5,8,8A,9-TETRAHYDROFURO[3',4':6,7]NAPHTHO[2,3-D][1,3]DIOXOL-6(5AH)-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PODOPHYLLOTOXIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C13 POD doub 353 n n C13 O4 POD sing 354 n n C13 C10 POD sing 355 n n O4 C12 POD sing 356 n n C10 C9 POD sing 357 n n C10 C11 POD sing 358 n n C10 H10 POD sing 359 n n C9 C12 POD sing 360 n n C9 C8 POD sing 361 n n C9 H9 POD sing 362 n n C12 H121 POD sing 363 n n C12 H122 POD sing 364 n n C11 C5 POD sing 365 n n C11 C14 POD sing 366 n n C11 H11 POD sing 367 n n C5 C6 POD sing 368 n y C5 C4 POD doub 369 n y C6 C8 POD sing 370 n n C6 C7 POD doub 371 n y C8 O3 POD sing 372 n n C8 H8 POD sing 373 n n O3 HO3 POD sing 374 n n C7 C2 POD sing 375 n y C7 H7 POD sing 376 n n C2 C3 POD doub 377 n y C2 O2 POD sing 378 n n C3 C4 POD sing 379 n y C3 O1 POD sing 380 n n C4 H4 POD sing 381 n n O2 C1 POD sing 382 n n C1 O1 POD sing 383 n n C1 H11A POD sing 384 n n C1 H12 POD sing 385 n n C14 C15 POD sing 386 n y C14 C19 POD doub 387 n y C15 C16 POD doub 388 n y C15 H15 POD sing 389 n n C16 O6 POD sing 390 n n C16 C17 POD sing 391 n y O6 C20 POD sing 392 n n C20 H201 POD sing 393 n n C20 H202 POD sing 394 n n C20 H203 POD sing 395 n n C17 O7 POD sing 396 n n C17 C18 POD doub 397 n y O7 C21 POD sing 398 n n C21 H211 POD sing 399 n n C21 H212 POD sing 400 n n C21 H213 POD sing 401 n n C18 C19 POD sing 402 n y C18 O8 POD sing 403 n n C19 H19 POD sing 404 n n O8 C22 POD sing 405 n n C22 H221 POD sing 406 n n C22 H222 POD sing 407 n n C22 H223 POD sing 408 n n # _atom_sites.entry_id 1SA1 _atom_sites.fract_transf_matrix[1][1] 0.003048 _atom_sites.fract_transf_matrix[1][2] 0.00176 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 MG A 1 501 501 MG MG . G 5 GTP A 1 600 600 GTP GTP . H 6 GDP B 1 602 602 GDP GDP . I 7 POD B 1 700 700 POD POD . J 4 MG C 1 502 502 MG MG . K 5 GTP C 1 601 601 GTP GTP . L 6 GDP D 1 603 603 GDP GDP . M 7 POD D 1 701 701 POD POD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 POD . . . I 7 115.817 88.087 9.521 1 116.24 ? O5 POD 700 B 1 HETATM 2 C C13 POD . . . I 7 116.759 88.776 9.288 1 116.2 ? C13 POD 700 B 1 HETATM 3 O O4 POD . . . I 7 117.856 89.097 10.154 1 116.64 ? O4 POD 700 B 1 HETATM 4 C C10 POD . . . I 7 116.86 89.602 8.132 1 116.07 ? C10 POD 700 B 1 HETATM 5 C C9 POD . . . I 7 118.162 90.326 8.185 1 116.55 ? C9 POD 700 B 1 HETATM 6 C C12 POD . . . I 7 118.758 90.063 9.574 1 116.68 ? C12 POD 700 B 1 HETATM 7 C C11 POD . . . I 7 115.834 89.541 7.111 1 116.01 ? C11 POD 700 B 1 HETATM 8 C C5 POD . . . I 7 116.034 90.758 6.281 1 116.29 ? C5 POD 700 B 1 HETATM 9 C C6 POD . . . I 7 117.12 91.593 6.378 1 116.55 ? C6 POD 700 B 1 HETATM 10 C C8 POD . . . I 7 118.301 91.595 7.35 1 116.63 ? C8 POD 700 B 1 HETATM 11 O O3 POD . . . I 7 119.602 91.654 6.717 1 116.4 ? O3 POD 700 B 1 HETATM 12 C C7 POD . . . I 7 116.936 92.433 5.495 1 116.48 ? C7 POD 700 B 1 HETATM 13 C C2 POD . . . I 7 116.246 92.86 4.588 1 116.37 ? C2 POD 700 B 1 HETATM 14 C C3 POD . . . I 7 115.213 92.086 4.479 1 116.45 ? C3 POD 700 B 1 HETATM 15 C C4 POD . . . I 7 115.082 91.022 5.325 1 116.42 ? C4 POD 700 B 1 HETATM 16 O O2 POD . . . I 7 116.249 93.936 3.642 1 116.34 ? O2 POD 700 B 1 HETATM 17 C C1 POD . . . I 7 115.044 93.761 2.862 1 116.57 ? C1 POD 700 B 1 HETATM 18 O O1 POD . . . I 7 114.392 92.589 3.399 1 116.59 ? O1 POD 700 B 1 HETATM 19 C C14 POD . . . I 7 116.033 88.288 6.364 1 116.05 ? C14 POD 700 B 1 HETATM 20 C C15 POD . . . I 7 115.267 87.207 6.729 1 116.37 ? C15 POD 700 B 1 HETATM 21 C C16 POD . . . I 7 115.341 85.983 6.067 1 116.4 ? C16 POD 700 B 1 HETATM 22 O O6 POD . . . I 7 114.572 84.905 6.41 1 116.54 ? O6 POD 700 B 1 HETATM 23 C C20 POD . . . I 7 114.683 84.133 7.6 1 116.67 ? C20 POD 700 B 1 HETATM 24 C C17 POD . . . I 7 116.189 85.821 5.025 1 116.17 ? C17 POD 700 B 1 HETATM 25 O O7 POD . . . I 7 116.239 84.614 4.394 1 116.04 ? O7 POD 700 B 1 HETATM 26 C C21 POD . . . I 7 115.209 83.638 4.238 1 116.23 ? C21 POD 700 B 1 HETATM 27 C C18 POD . . . I 7 116.958 86.884 4.652 1 116.19 ? C18 POD 700 B 1 HETATM 28 C C19 POD . . . I 7 116.898 88.119 5.302 1 116.17 ? C19 POD 700 B 1 HETATM 29 O O8 POD . . . I 7 117.784 86.68 3.607 1 116.4 ? O8 POD 700 B 1 HETATM 30 C C22 POD . . . I 7 117.422 87.296 2.37 1 116.54 ? C22 POD 700 B 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 30 #