data_1SA1 # _model_server_result.job_id UmU9RNTjSqt_13lxCTTPnQ _model_server_result.datetime_utc '2024-11-24 13:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1sa1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":701}' # _entry.id 1SA1 # _exptl.entry_id 1SA1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.405 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "9-HYDROXY-5-(3,4,5-TRIMETHOXYPHENYL)-5,8,8A,9-TETRAHYDROFURO[3',4':6,7]NAPHTHO[2,3-D][1,3]DIOXOL-6(5AH)-ONE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1SA1 _cell.length_a 328.061 _cell.length_b 328.061 _cell.length_c 54.301 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1SA1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 170 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 I N N ? 7 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 F MG MG . A MG 501 1_555 G O2B GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc2 F MG MG . A MG 501 1_555 G O2G GTP . A GTP 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc3 J MG MG . C MG 502 1_555 K O3G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? metalc ? metalc4 J MG MG . C MG 502 1_555 K O2G GTP . C GTP 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C22 H22 O8' _chem_comp.formula_weight 414.405 _chem_comp.id POD _chem_comp.mon_nstd_flag . _chem_comp.name "9-HYDROXY-5-(3,4,5-TRIMETHOXYPHENYL)-5,8,8A,9-TETRAHYDROFURO[3',4':6,7]NAPHTHO[2,3-D][1,3]DIOXOL-6(5AH)-ONE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PODOPHYLLOTOXIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C13 POD doub 353 n n C13 O4 POD sing 354 n n C13 C10 POD sing 355 n n O4 C12 POD sing 356 n n C10 C9 POD sing 357 n n C10 C11 POD sing 358 n n C10 H10 POD sing 359 n n C9 C12 POD sing 360 n n C9 C8 POD sing 361 n n C9 H9 POD sing 362 n n C12 H121 POD sing 363 n n C12 H122 POD sing 364 n n C11 C5 POD sing 365 n n C11 C14 POD sing 366 n n C11 H11 POD sing 367 n n C5 C6 POD sing 368 n y C5 C4 POD doub 369 n y C6 C8 POD sing 370 n n C6 C7 POD doub 371 n y C8 O3 POD sing 372 n n C8 H8 POD sing 373 n n O3 HO3 POD sing 374 n n C7 C2 POD sing 375 n y C7 H7 POD sing 376 n n C2 C3 POD doub 377 n y C2 O2 POD sing 378 n n C3 C4 POD sing 379 n y C3 O1 POD sing 380 n n C4 H4 POD sing 381 n n O2 C1 POD sing 382 n n C1 O1 POD sing 383 n n C1 H11A POD sing 384 n n C1 H12 POD sing 385 n n C14 C15 POD sing 386 n y C14 C19 POD doub 387 n y C15 C16 POD doub 388 n y C15 H15 POD sing 389 n n C16 O6 POD sing 390 n n C16 C17 POD sing 391 n y O6 C20 POD sing 392 n n C20 H201 POD sing 393 n n C20 H202 POD sing 394 n n C20 H203 POD sing 395 n n C17 O7 POD sing 396 n n C17 C18 POD doub 397 n y O7 C21 POD sing 398 n n C21 H211 POD sing 399 n n C21 H212 POD sing 400 n n C21 H213 POD sing 401 n n C18 C19 POD sing 402 n y C18 O8 POD sing 403 n n C19 H19 POD sing 404 n n O8 C22 POD sing 405 n n C22 H221 POD sing 406 n n C22 H222 POD sing 407 n n C22 H223 POD sing 408 n n # _atom_sites.entry_id 1SA1 _atom_sites.fract_transf_matrix[1][1] 0.003048 _atom_sites.fract_transf_matrix[1][2] 0.00176 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018416 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 4 MG A 1 501 501 MG MG . G 5 GTP A 1 600 600 GTP GTP . H 6 GDP B 1 602 602 GDP GDP . I 7 POD B 1 700 700 POD POD . J 4 MG C 1 502 502 MG MG . K 5 GTP C 1 601 601 GTP GTP . L 6 GDP D 1 603 603 GDP GDP . M 7 POD D 1 701 701 POD POD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 POD . . . M 7 40.369 51.022 -5.753 1 116.29 ? O5 POD 701 D 1 HETATM 2 C C13 POD . . . M 7 41.354 51.503 -6.276 1 116.41 ? C13 POD 701 D 1 HETATM 3 O O4 POD . . . M 7 42.717 51.517 -5.78 1 116.78 ? O4 POD 701 D 1 HETATM 4 C C10 POD . . . M 7 41.336 52.347 -7.447 1 116.39 ? C10 POD 701 D 1 HETATM 5 C C9 POD . . . M 7 42.754 52.741 -7.787 1 116.57 ? C9 POD 701 D 1 HETATM 6 C C12 POD . . . M 7 43.631 52.267 -6.618 1 116.64 ? C12 POD 701 D 1 HETATM 7 C C11 POD . . . M 7 40.06 52.681 -8.108 1 116.28 ? C11 POD 701 D 1 HETATM 8 C C5 POD . . . M 7 40.345 53.9 -8.915 1 116.34 ? C5 POD 701 D 1 HETATM 9 C C6 POD . . . M 7 41.589 54.414 -9.143 1 116.43 ? C6 POD 701 D 1 HETATM 10 C C8 POD . . . M 7 42.946 54.018 -8.596 1 116.55 ? C8 POD 701 D 1 HETATM 11 O O3 POD . . . M 7 43.885 53.777 -9.639 1 116.45 ? O3 POD 701 D 1 HETATM 12 C C7 POD . . . M 7 41.383 55.354 -9.881 1 116.36 ? C7 POD 701 D 1 HETATM 13 C C2 POD . . . M 7 40.579 56.021 -10.488 1 116.39 ? C2 POD 701 D 1 HETATM 14 C C3 POD . . . M 7 39.396 55.555 -10.287 1 116.47 ? C3 POD 701 D 1 HETATM 15 C C4 POD . . . M 7 39.254 54.481 -9.489 1 116.45 ? C4 POD 701 D 1 HETATM 16 O O2 POD . . . M 7 40.56 57.152 -11.353 1 116.6 ? O2 POD 701 D 1 HETATM 17 C C1 POD . . . M 7 39.171 57.359 -11.721 1 116.66 ? C1 POD 701 D 1 HETATM 18 O O1 POD . . . M 7 38.433 56.335 -11.031 1 116.63 ? O1 POD 701 D 1 HETATM 19 C C14 POD . . . M 7 39.67 51.494 -8.908 1 116.22 ? C14 POD 701 D 1 HETATM 20 C C15 POD . . . M 7 38.756 50.635 -8.337 1 116.37 ? C15 POD 701 D 1 HETATM 21 C C16 POD . . . M 7 38.318 49.504 -9.01 1 116.35 ? C16 POD 701 D 1 HETATM 22 O O6 POD . . . M 7 37.406 48.641 -8.476 1 116.52 ? O6 POD 701 D 1 HETATM 23 C C20 POD . . . M 7 37.791 47.751 -7.425 1 116.72 ? C20 POD 701 D 1 HETATM 24 C C17 POD . . . M 7 38.787 49.212 -10.246 1 116.11 ? C17 POD 701 D 1 HETATM 25 O O7 POD . . . M 7 38.341 48.089 -10.862 1 115.97 ? O7 POD 701 D 1 HETATM 26 C C21 POD . . . M 7 37.147 47.35 -10.601 1 116.2 ? C21 POD 701 D 1 HETATM 27 C C18 POD . . . M 7 39.695 50.04 -10.831 1 116.11 ? C18 POD 701 D 1 HETATM 28 C C19 POD . . . M 7 40.157 51.186 -10.178 1 116.22 ? C19 POD 701 D 1 HETATM 29 O O8 POD . . . M 7 40.125 49.674 -12.057 1 116.11 ? O8 POD 701 D 1 HETATM 30 C C22 POD . . . M 7 39.677 50.492 -13.118 1 116.41 ? C22 POD 701 D 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 30 #